BAC Information

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BAC

Clone NameB6Ng01-128H08
Chromosome7 (Build37)
Map Location 104,540,111 - 104,672,375
singlet/doubletdoublet
Overlap geneAlg8, Ndufc2, Thrsp, Kctd14, Ints4
Upstream geneOdz4, LOC666858, Nars2, Gab2, LOC100040457, Usp35, EG622320
Downstream gene1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128H08.bB6Ng01-128H08.g
ACCDH930303DH930304
length1,0301,115
definitionDH930303|Mus musculus domesticus DNA, BAC clone: B6Ng01-128H08, 5' end.DH930304|Mus musculus domesticus DNA, BAC clone: B6Ng01-128H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,540,111 - 104,541,141)(104,671,254 - 104,672,375)
sequence
gaattcctactcccgtttacctcctggaagctgaagtaccccttcatccc
tttgctgctgacctcggtgtactgtgcagtgggcatcacatacgcctgga
ccaggctgtatgcttcagtgttgactggctcccttgtcagcaagacaaag
aaacattgaataaagaagtgtttgggtgaaggccaagcaattacttcatg
ggtattaatcagaacttgaagaaagttgccagtggcaggatctatttatt
tagtagatccgttgaaggaccattcttccacacttggccttgccctgcct
agcaacctgattgtttccatggtgaggagccacttgccctctataagcaa
caaaacacttttgagaaaactctcaccttcctctgtaaaaatagtctgca
attgttgaaactgctgtgtccactgagggtgaaccggggtgggtgggtga
aaagtggcataattttctgtggctggtactgaccattgttaggatatagt
gcataattagattctgtacctaaggaaatataaatgtcattttatattta
tgcatcaaatagcaaagtgttttgggtccttgccagctttcacattcact
ttcctgttggcacgcacatgggaagacagtgtattgtctctgttctgtac
accttgttccaggaaagtggttcactccacaagtcgggatatttaatgtg
ctgatttagcaaaccccagggaatccaaaccacggtcagaacatctacaa
tagttccttctcacagcaagcctcgatgtttggataagactagaggtgtg
cgttccatgtgaccatgtgaccgttcctcttgtgaacactgtgaagtggt
cttagatgtcccttttattttttgtaagatttatttttaatcatgtatgt
gtgcaccacaagttgtctgaacaccagagagggtgtttggatcttctaga
actggtagttcctgttggaatagccacatggtctggaagtgtggaaccaa
actcttgtgtagagcagccattgttcttag
gaattcatttaatccttacaacatgaattgtagttaatctgtgtctcgga
gcatgaaaccaaagaccaacattacctggtttgcccaagatcacggaatt
aaaaaatggcaaaaccaggtcacaaacccagtcctgtctgactgtaaaac
ccttttccttattcattatcatataattccccatttattttatttatttg
tgaaatatatgaagtattaatgaaacaaaccaaactaaaatacagctata
ttgaactatatttctacaatgtgatttggcagggcaaaaacacccccctc
agaagcacacaccaacgatccttggtccggaaagctaagaaacagcattt
ttaaatattaaaactcagccaggcttaaaccctttaatcccagaactcag
gagtcagaggcaggtgggtctctgagtttgagtctagcctggtctaccaa
gctatggcagatgagccaggattacacagagaaacactgtcacaagcaaa
ccagcaaacagatcaagcaagcaagctagtgtggagtgtacacttgggac
agaggcaggagcatcaggattcgggtgcagcctccttccatataaagtct
gagaccatttttagccacatgaaacttgtctcaaactgaaaaaagaaaca
aaacaaaaacaaaagaaagtacaaatatattgtgattttaaaaagaaaaa
aaccacgatttacaaaatagcccaaatttgttaatttttaattggtttac
atttatttattatctggtttttgtgtgcctctgttggcatgggtcacaac
acaaatgtggaaacagaacacacatgaggaggtgagaggtcaagtctatg
ccccccactggttctagggatagatctcagatggtcacatgggttctagg
gatggatctcagatggtcacatgggttctagggatggatctcagatggtc
acaatgggtctagggatggatcttcagatggtcaccatgggttctaggat
ggatcttcagatggtcccatgggtcaagggatggatctcgatggtcacat
gggtctagggatggatctcaaatgtccacgggttctaggatggatctcaa
tggtcactggttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_104540111_104541141
seq2: B6Ng01-128H08.b_47_1076

seq1  GAATTCCTACTCCCGTTTACCTCCTGGAAGCTGAAGTACCCCTTCATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTCCCGTTTACCTCCTGGAAGCTGAAGTACCCCTTCATCCC  50

seq1  TTTGCTGCTGACCTCGGTGTACTGTGCAGTGGGCATCACATACGCCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGCTGACCTCGGTGTACTGTGCAGTGGGCATCACATACGCCTGGA  100

seq1  CCAGGCTGTATGCTTCAGTGTTGACTGGCTCCCTTGTCAGCAAGACAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGTATGCTTCAGTGTTGACTGGCTCCCTTGTCAGCAAGACAAAG  150

seq1  AAACATTGAATAAAGAAGTGTTTGGGTGAAGGCCAAGCAATTACTTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGAATAAAGAAGTGTTTGGGTGAAGGCCAAGCAATTACTTCATG  200

seq1  GGTATTAATCAGAACTTGAAGAAAGTTGCCAGTGGCAGGATCTATTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAATCAGAACTTGAAGAAAGTTGCCAGTGGCAGGATCTATTTATT  250

seq1  TAGTAGATCCGTTGAAGGACCATTCTTCCACACTTGGCCTTGCCCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGATCCGTTGAAGGACCATTCTTCCACACTTGGCCTTGCCCTGCCT  300

seq1  AGCAACCTGATTGTTTCCATGGTGAGGAGCCACTTGCCCTCTATAAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCTGATTGTTTCCATGGTGAGGAGCCACTTGCCCTCTATAAGCAA  350

seq1  CAAAACACTTTTGAGAAAACTCTCACCTTCCTCTGTAAAAATAGTCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACTTTTGAGAAAACTCTCACCTTCCTCTGTAAAAATAGTCTGCA  400

seq1  ATTGTTGAAACTGCTGTGTCCACTGAGGGTGAACCGGGGTGGGTGGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGAAACTGCTGTGTCCACTGAGGGTGAACCGGGGTGGGTGGGTGA  450

seq1  AAAGTGGCATAATTTTCTGTGGCTGGTACTGACCATTGTTAGGATATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGCATAATTTTCTGTGGCTGGTACTGACCATTGTTAGGATATAGT  500

seq1  GCATAATTAGATTCTGTACCTAAGGAAATATAAATGTCATTTTATATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATTAGATTCTGTACCTAAGGAAATATAAATGTCATTTTATATTTA  550

seq1  TGCATCAAATAGCAAAGTGTTTTGGGTCCTTGCCAGCTTTCACATTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAAATAGCAAAGTGTTTTGGGTCCTTGCCAGCTTTCACATTCACT  600

seq1  TTCCTGTTGGCACGCACATGGGAAGACAGTGTATTGTCTCTGTTCTGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTGGCACGCACATGGGAAGACAGTGTATTGTCTCTGTTCTGTAC  650

seq1  ACCTTGTTCCAGGAAAGTGGTTCACTCCACAAGTCGGGATATTTAATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTTCCAGGAAAGTGGTTCACTCCACAAGTCGGGATATTTAATGTG  700

seq1  CTGATTTAGCAAACCCCAGGGAATCCAAACCACGGTCAGAACATCTACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTAGCAAACCCCAGGGAATCCAAACCACGGTCAGAACATCTACAA  750

seq1  TAGTTCCTTCTCACAGCAAGCCTCGATGTTTGGATAAGACTAGAGGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCTTCTCACAGCAAGCCTCGATGTTTGGATAAGACTAGAGGTGTG  800

seq1  CGTTCCATGTGACCATGTGACCGTTCCTCTTGTGAACACTGTGAAGTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCATGTGACCATGTGACCGTTCCTCTTGTGAACACTGTGAAGTGGT  850

seq1  CTTAGATGTCCC-TTTATTTTTTGTAAGATTTATTTTTATATCATGTATG  899
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  CTTAGATGTCCCTTTTATTTTTTGTAAGATTTATTTTTA-ATCATGTATG  899

seq1  TGTGCACCACAAGATGTCTGAACACCAGAAGAGGGTG-TTGGATCCTCTA  948
      ||||||||||||| |||||||||||||| |||||||| ||||||| ||||
seq2  TGTGCACCACAAGTTGTCTGAACACCAG-AGAGGGTGTTTGGATCTTCTA  948

seq1  GAACTGG-AGTTCCAGGTGGTATAAGCCACATGGTCTGGAAGCTGGGAAC  997
      ||||||| |||||| | ||| || ||||||||||||||||||   |||||
seq2  GAACTGGTAGTTCCTGTTGGAAT-AGCCACATGGTCTGGAAGTGTGGAAC  997

seq1  CAAACTCTTGTGTAAGAGCAGCCATTGTTCTTAG  1031
      ||||||||||||| ||||||||||||||||||||
seq2  CAAACTCTTGTGT-AGAGCAGCCATTGTTCTTAG  1030

seq1: chr7_104671254_104672375
seq2: B6Ng01-128H08.g_68_1182 (reverse)

seq1  TAGAACCCATGTGACCATCTGAGATCCATCCCTAGAACCCATGTGACCAT  50
      |||||||   |||||||| |||||||||| ||||||||||  |||  |||
seq2  TAGAACC--AGTGACCAT-TGAGATCCAT-CCTAGAACCC--GTGGACAT  44

seq1  CTGAGATCCATCCCTAGAACCCATGTGACCATCTGAGATCCATCCCTAGA  100
       |||||||||||||||| ||||||||||||||| ||||||||||||| | 
seq2  TTGAGATCCATCCCTAG-ACCCATGTGACCATC-GAGATCCATCCCTTG-  91

seq1  ACCCATGTGACCATCTG-AGATCCATCCCTAGAACCCAT-GTGACCATCT  148
      ||||||| ||||||||| |||||||| |||||||||||| ||||||||||
seq2  ACCCATGGGACCATCTGAAGATCCAT-CCTAGAACCCATGGTGACCATCT  140

seq1  G-AGATCCATCCCTAGAACCCATGTGACCATCTGAGATCCATCCCTAGAA  197
      | ||||||||||||||| ||  ||||||||||||||||||||||||||||
seq2  GAAGATCCATCCCTAGACCCATTGTGACCATCTGAGATCCATCCCTAGAA  190

seq1  CCCATGTGACCATCTGAGATCCATCCCTAGAACCCATGTGACCATCTGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGACCATCTGAGATCCATCCCTAGAACCCATGTGACCATCTGAG  240

seq1  ATCTATCCCTAGAATCCAGTGGGGGGCATAGACTTGACCTCTCACCTCCT  297
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATCTATCCCTAGAA-CCAGTGGGGGGCATAGACTTGACCTCTCACCTCCT  289

seq1  CATGTGTGTTCTGTTTCCACATTTGTGTTGTGACCCATGCCAACAGAGGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTTCTGTTTCCACATTTGTGTTGTGACCCATGCCAACAGAGGC  339

seq1  ACACAAAAACCAGATAATAAATAAATGTAAACCAATTAAAAATTAACAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAACCAGATAATAAATAAATGTAAACCAATTAAAAATTAACAAA  389

seq1  TTTGGGCTATTTTGT-AATCGTGGTTTTTTTCTTTTTAAAATCACAATAT  446
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTGGGCTATTTTGTAAATCGTGGTTTTTTTCTTTTTAAAATCACAATAT  439

seq1  ATTTGTACTTTCTTTTGTTTTTGTTTTGTTTCTTTTTTCAGTTTGAGACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTACTTTCTTTTGTTTTTGTTTTGTTTCTTTTTTCAGTTTGAGACA  489

seq1  AGTTTCATGTGGCTAAAAATGGTCTCAGACTTTATATGGAAGGAGGCTGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATGTGGCTAAAAATGGTCTCAGACTTTATATGGAAGGAGGCTGC  539

seq1  ACCCGAATCCTGATGCTCCTGCCTCTGTCCCAAGTGTACACTCCACACTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAATCCTGATGCTCCTGCCTCTGTCCCAAGTGTACACTCCACACTA  589

seq1  GCTTGCTTGCTTGATCTGTTTGCTGGTTTGCTTGTGACAGTGTTTCTCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTGCTTGATCTGTTTGCTGGTTTGCTTGTGACAGTGTTTCTCTG  639

seq1  TGTAATCCTGGCTCATCTGCCATAGCTTGGTAGACCAGGCTAGACTCAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCTGGCTCATCTGCCATAGCTTGGTAGACCAGGCTAGACTCAAA  689

seq1  CTCAGAGACCCACCTGCCTCTGACTCCTGAGTTCTGGGATTAAAGGGTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGACCCACCTGCCTCTGACTCCTGAGTTCTGGGATTAAAGGGTTT  739

seq1  AAGCCTGGCTGAGTTTTAATATTTAAAAATGCTGTTTCTTAGCTTTCCGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGCTGAGTTTTAATATTTAAAAATGCTGTTTCTTAGCTTTCCGG  789

seq1  ACCAAGGATCGTTGGTGTGTGCTTCTGAGGGGGGTGTTTTTGCCCTGCCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGATCGTTGGTGTGTGCTTCTGAGGGGGGTGTTTTTGCCCTGCCA  839

seq1  AATCACATTGTAGAAATATAGTTCAATATAGCTGTATTTTAGTTTGGTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATTGTAGAAATATAGTTCAATATAGCTGTATTTTAGTTTGGTTT  889

seq1  GTTTCATTAATACTTCATATATTTCACAAATAAATAAAATAAATGGGGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTAATACTTCATATATTTCACAAATAAATAAAATAAATGGGGAA  939

seq1  TTATATGATAATGAATAAGGAAAAGGGTTTTACAGTCAGACAGGACTGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGATAATGAATAAGGAAAAGGGTTTTACAGTCAGACAGGACTGGG  989

seq1  TTTGTGACCTGGTTTTGCCATTTTTTAATTCCGTGATCTTGGGCAAACCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACCTGGTTTTGCCATTTTTTAATTCCGTGATCTTGGGCAAACCA  1039

seq1  GGTAATGTTGGTCTTTGGTTTCATGCTCCGAGACACAGATTAACTACAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGTTGGTCTTTGGTTTCATGCTCCGAGACACAGATTAACTACAAT  1089

seq1  TCATGTTGTAAGGATTAAATGAATTC  1122
      ||||||||||||||||||||||||||
seq2  TCATGTTGTAAGGATTAAATGAATTC  1115