BAC Information

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BAC

Clone NameB6Ng01-135B10
Chromosome7 (Build37)
Map Location 52,374,747 - 52,515,686
singlet/doubletdoublet
Overlap geneRps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16
Upstream geneKlk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt
Downstream gene1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135B10.bB6Ng01-135B10.g
ACCDH935218DH935219
length1,116854
definitionDH935218|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B10, 5' end.DH935219|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,374,747 - 52,375,861)(52,514,835 - 52,515,686)
sequence
gaattcttgggtagtctcagcaacagagtgagacagcaagtgtctcaaaa
caagacataacacaaagaacccaaaaaggaggagcagcaatgctgcctga
ccattctgccttccccacccaaagaaagttccacacacagccagaccaag
ccacagttagcagggccaggcctgcctgccctgtctgcagttggtgggcc
aaagtctgctgtcactaaaccaggaccctgtcctgggtggtgctgatgca
catttttgatcccagcatttgggagggagaagcaggaagttctttgtgag
tttgaggccagccagttctacaaagcaagttccacaacagccagagctac
acagaaccctgactccaaaacaaacacccaagaccctgctgagaagcctc
acccgcccagagccaatggctcctctctggtcttctcaccaggcatgatt
cgctacagaatcttctagaagcatacttaaatgacttcatcaagcttgct
ctagaagacacaggtcccataaccatacataacctctgcagctacctgcc
aaaggtcattctcctggggccatagagtgacctacctgcacagctagctg
ctagcgtggccaccatttacagatgaggagactcaaggtctatggctgag
tgagcagtgaggctggtcagtgctgagcctgtctcagaacacctggatcc
tggggcacctcctcacagttcccacttccagggactggctgtgcagatat
atacagcctttgcagccaacaggcaggatgtaagtttgacaggagactca
aggaggaagtgtgggctagtgagctggttcagtaggtagaggtatttaag
acaaagcatcatgggtctgtttgacttgtggaacccacatgatggagaga
actgaatcctttgacctctacatgggggtctggtggcaggcacacacaca
ctcactcacattagtatttttcatttttggaagaggttatcacttatgca
gacagcctgacttcaaactctgagatctgcctgcttctgagtctgggatc
aagacgtgtaccaactgctggtgtggtgaaccacacttttaaacccagca
tttagtggccacagtt
gaattcctttgtaagggacactggtcccatgggacaacaaagtagaatat
gtggctcatgtagaagaggatccaagaattgaacacgttcaggtaggtgt
tggtgatgaagcacacctgcaggccagtggagacatgactggggaggaag
accagggacagggagagagaagggactgacaaagtttggaggggctgaag
gagcatggtccacaccagggcagccgtgggattttctccagaggggaggg
agaggagcactgtggggcaggcaggtttgtgaagcctggggctcctcacc
ataaccatgctgtaccccactccaccaaaccaggggctcaggttcttcca
catgtccgcactgctctgctgtgccctctgaccaactgccatctccagga
agagaagtggaatcccaatgcccaacagcatcaagatgtacgctataaag
aagctgcctgtggagagaaggcagaagggttccgagagcctcggctcatg
tctgtccttcttttatgcaactaggaagactgctcaccagcagcaccctc
actcaggccacaaggttaaggcttgactgccccgcatccgtcactggcca
accttcttacttctaggagtctcagacgcctggtcattgcccttccccac
caacatcctgcctggccaacccaccgagttatgctcaaaacccttgacct
ccactttcccagactctgggtgctcggactcctgcttctatcctgctctc
acatctcagagacgtcagcaacggaaacgaggacaggcttcactcctgtt
gtcccttttgggttcacgtggccctggttcccaacttacagcttcctttg
tgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52374747_52375861
seq2: B6Ng01-135B10.b_50_1165

seq1  GAATTCTTGGGTAGTCTCAGCAACAGAGTGAGACAGCAAGTGTCTCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGTAGTCTCAGCAACAGAGTGAGACAGCAAGTGTCTCAAAA  50

seq1  CAAGACATAACACAAAGAACCCAAAAAGGAGGAGCAGCAATGCTGCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACATAACACAAAGAACCCAAAAAGGAGGAGCAGCAATGCTGCCTGA  100

seq1  CCATTCTGCCTTCCCCACCCAAAGAAAGTTCCACACACAGCCAGACCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGCCTTCCCCACCCAAAGAAAGTTCCACACACAGCCAGACCAAG  150

seq1  CCACAGTTAGCAGGGCCAGGCCTGCCTGCCCTGTCTGCAGTTGGTGGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTAGCAGGGCCAGGCCTGCCTGCCCTGTCTGCAGTTGGTGGGCC  200

seq1  AAAGTCTGCTGTCACTAAACCAGGACCCTGTCCTGGGTGGTGCTGATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGCTGTCACTAAACCAGGACCCTGTCCTGGGTGGTGCTGATGCA  250

seq1  CATTTTTGATCCCAGCATTTGGGAGGGAGAAGCAGGAAGTTCTTTGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGATCCCAGCATTTGGGAGGGAGAAGCAGGAAGTTCTTTGTGAG  300

seq1  TTTGAGGCCAGCCAGTTCTACAAAGCAAGTTCCACAACAGCCAGAGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCCAGCCAGTTCTACAAAGCAAGTTCCACAACAGCCAGAGCTAC  350

seq1  ACAGAACCCTGACTCCAAAACAAACACCCAAGACCCTGCTGAGAAGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACCCTGACTCCAAAACAAACACCCAAGACCCTGCTGAGAAGCCTC  400

seq1  ACCCGCCCAGAGCCAATGGCTCCTCTCTGGTCTTCTCACCAGGCATGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCCCAGAGCCAATGGCTCCTCTCTGGTCTTCTCACCAGGCATGATT  450

seq1  CGCTACAGAATCTTCTAGAAGCATACTTAAATGACTTCATCAAGCTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTACAGAATCTTCTAGAAGCATACTTAAATGACTTCATCAAGCTTGCT  500

seq1  CTAGAAGACACAGGTCCCATAACCATACATAACCTCTGCAGCTACCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGACACAGGTCCCATAACCATACATAACCTCTGCAGCTACCTGCC  550

seq1  AAAGGTCATTCTCCTGGGGCCATAGAGTGACCTACCTGCACAGCTAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCATTCTCCTGGGGCCATAGAGTGACCTACCTGCACAGCTAGCTG  600

seq1  CTAGCGTGGCCACCATTTACAGATGAGGAGACTCAAGGTCTATGGCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGTGGCCACCATTTACAGATGAGGAGACTCAAGGTCTATGGCTGAG  650

seq1  TGAGCAGTGAGGCTGGTCAGTGCTGAGCCTGTCTCAGAACACCTGGATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTGAGGCTGGTCAGTGCTGAGCCTGTCTCAGAACACCTGGATCC  700

seq1  TGGGGCACCTCCTCACAGTTCCCACTTCCAGGGACTGGCTGTGCAGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCACCTCCTCACAGTTCCCACTTCCAGGGACTGGCTGTGCAGATAT  750

seq1  ATACAGCCTTTGCAGCCAACAGGCAGGATGTAAGTTTGACAGGAGACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCCTTTGCAGCCAACAGGCAGGATGTAAGTTTGACAGGAGACTCA  800

seq1  AGGAGGAAGTGTGGGCTAGTGAGCTGGTTCAGTAGGTAGAGGTATTTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGTGTGGGCTAGTGAGCTGGTTCAGTAGGTAGAGGTATTTAAG  850

seq1  ACAAAGCATCAT-GGTCTGTTTGACTTGTGGAACCCACATGATGGAGAGA  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCATCATGGGTCTGTTTGACTTGTGGAACCCACATGATGGAGAGA  900

seq1  ACTGAATCCTTTGACCTCTACATGGGGGTCT-GTGGCAGGCACACACACA  948
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTGAATCCTTTGACCTCTACATGGGGGTCTGGTGGCAGGCACACACACA  950

seq1  CTCACTCACATTAGTA-TTTTCATTTTTGGAAGAGGTTATCAC-TATGCA  996
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  CTCACTCACATTAGTATTTTTCATTTTTGGAAGAGGTTATCACTTATGCA  1000

seq1  GACAGCCTGACTTCAAACTCTGAGATCTGCCTGCCTCTTGAGTTCTGGGA  1046
      |||||||||||||||||||||||||||||||||| || |||| |||||||
seq2  GACAGCCTGACTTCAAACTCTGAGATCTGCCTGCTTC-TGAG-TCTGGGA  1048

seq1  TCAAAGACGTGTACC-ACTGCTGGGTGTGGTGACACACACCTTTAAACCC  1095
      || |||||||||||| |||||| ||||||||||  ||||| |||||||||
seq2  TC-AAGACGTGTACCAACTGCT-GGTGTGGTGAACCACACTTTTAAACCC  1096

seq1  AGCATTTAGTGGGCACAGTT  1115
      |||||||||||| |||||||
seq2  AGCATTTAGTGGCCACAGTT  1116

seq1: chr7_52514835_52515686
seq2: B6Ng01-135B10.g_69_921 (reverse)

seq1  TCACAAAGGAAGCTGTAAGTCTGGGAACCAGGG-CACGTGAACCCAAAAG  49
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  TCACAAAGGAAGCTGTAAGT-TGGGAACCAGGGCCACGTGAACCCAAAAG  49

seq1  GGACAACAGGAGTGAAGCCTGTCCTCGTTTCCGTTGCTGACGTCTCTGAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACAGGAGTGAAGCCTGTCCTCGTTTCCGTTGCTGACGTCTCTGAG  99

seq1  ATGTGAGAGCAGGATAGAAAGCAGGAGTCCGAGCACCCAGGGTCTGGGAA  149
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  ATGTGAGAGCAGGATAG-AAGCAGGAGTCCGAGCACCCAGAGTCTGGGAA  148

seq1  AGTGGAGGTC-AGGGTTTTGAGCATAACTCGGTGGGTTGGCCAGGCAGGA  198
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGGTCAAGGGTTTTGAGCATAACTCGGTGGGTTGGCCAGGCAGGA  198

seq1  TGTTGGTGGGGAAGGGCAATGACCAGGCGTCTGAGACTCCTAGAAGTAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTGGGGAAGGGCAATGACCAGGCGTCTGAGACTCCTAGAAGTAAG  248

seq1  AAGGTTGGCCAGTGACGGATGCGGGGCAGTCAAGCCTTAACCTTGTGGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGGCCAGTGACGGATGCGGGGCAGTCAAGCCTTAACCTTGTGGCC  298

seq1  TGAGTGAGGGTGCTGCTGGTGAGCAGTCTTCCTAGTTGCAT-AAAGAAGG  347
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGAGTGAGGGTGCTGCTGGTGAGCAGTCTTCCTAGTTGCATAAAAGAAGG  348

seq1  ACAGACATGAGCCGAGGCTCTCGGAACCCTTCTGCCTTCTCTCCACAGGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATGAGCCGAGGCTCTCGGAACCCTTCTGCCTTCTCTCCACAGGC  398

seq1  AGCTTCTTTATAGCGTACATCTTGATGCTGTTGGGCATTGGGATTCCACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTTATAGCGTACATCTTGATGCTGTTGGGCATTGGGATTCCACT  448

seq1  TCTCTTCCTGGAGATGGCAGTTGGTCAGAGGGCACAGCAGAGCAGTGCGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTGGAGATGGCAGTTGGTCAGAGGGCACAGCAGAGCAGTGCGG  498

seq1  ACATGTGGAAGAACCTGAGCCCCTGGTTTGGTGGAGTGGGGTACAGCATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGAAGAACCTGAGCCCCTGGTTTGGTGGAGTGGGGTACAGCATG  548

seq1  GTTATGGTGAGGAGCCCCAGGCTTCACAAACCTGCCTGCCCCACAGTGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGTGAGGAGCCCCAGGCTTCACAAACCTGCCTGCCCCACAGTGCT  598

seq1  CCTCTCCCTCCCCTCTGGAGAAAATCCCACGGCTGCCCTGGTGTGGACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTCCCCTCTGGAGAAAATCCCACGGCTGCCCTGGTGTGGACCA  648

seq1  TGCTCCTTCAGCCCCTCCAAACTTTGTCAGTCCCTTCTCTCTCCCTGTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTCAGCCCCTCCAAACTTTGTCAGTCCCTTCTCTCTCCCTGTCC  698

seq1  CTGGTCTTCCTCCCCAGTCATGTCTCCACTGGCCTGCAGGTGTGCTTCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTTCCTCCCCAGTCATGTCTCCACTGGCCTGCAGGTGTGCTTCAT  748

seq1  CACCAACACCTACCTGAACGTGTTCAATTCTTGGATCCTCTTCTACATGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACACCTACCTGAACGTGTTCAATTCTTGGATCCTCTTCTACATGA  798

seq1  GCCACATATTCTACTTTGTTGTCCCATGGGACCAGTGTCCCTTACAAAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATATTCTACTTTGTTGTCCCATGGGACCAGTGTCCCTTACAAAGG  848

seq1  AATTC  852
      |||||
seq2  AATTC  853