BAC Information

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BAC

Clone NameB6Ng01-140G20
Chromosome7 (Build37)
Map Location 6,138,383 - 6,257,071
singlet/doubletdoublet
Overlap geneZfp444, Galp, Zfp371, EG627821, Zfp667
Upstream geneV1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787
Downstream geneZfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140G20.bB6Ng01-140G20.g
ACCDH939161DH939162
length1,1171,084
definitionDH939161|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G20, 5' end.DH939162|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,138,383 - 6,139,493)(6,255,958 - 6,257,071)
sequence
gaattccagcactcaggaggcagaggtagaggctggccttgtagtgagtt
tagaagatggctctcagtctgcaaagctagaaactgtctgctagaaacag
gcagagcaggtgcctacagaagccatactgctaggaatgcttacgagtct
tgaccagcaggtggaattatatgcatggctagtcaactgtgcctctgctg
tgtgatctaggtcaccctccctccagccagtggtccagtacagttaagac
gggaggtgaggagaggggtgctgtgtgtgtaactcctgcatctctcattt
cctagcaccagaggaattctgagaatcacttcttgggaacatgagcttag
aaatctaccctgtgtcctgcctggttcttagcttcatgcttttctgagat
aaaggttgcttcaaatttacattttacccagacaccagcagttcaagtaa
gattcaaaacaaaggaatgagttacctgttacttgatagcaaatgccccc
aaagctatgaagttgttgtgggccagagggtaggcgtgactggggaaagt
ggatctgtcacagggcctcttgaagaggccacaaggtattgaccatggct
gtcaccacttaaaggctgacttgaggctagaaccccatttccactgaatt
tgcttgcactggttgacaggagactgagtttgaacagcctgcagcagcag
cagccagcttcccttcggagatgcagcgaggcagctcagtggctaaaggt
ccttgtcatcaagcctgatgaggaactgagcctcacatggtgaggaggaa
gccaactgtcaagagtcattctcttgaccttcatatgtacaatgtatttc
ccatccctgacacacacacacacacacacacacacacacacacacacaca
cacacacacacacacggtagagagaagcttcttcatttaaaagcttcttg
ctgctctgcaggaggactggagtttgggtcccagtgccacgccaggtggc
ttcacgacttcctgtacttcagcttcaggaggattggatggcacactctt
acatggtatgcttcatgtaccaactccccaaaccacagaattgagtcttc
tgatgaaaccaaacaaa
gaattcttaggtgcagaataagggtggagagccgtccaaagtctttctga
catttatcacatttgtagggattccctgaagtgtgaattctctgatggag
cattaaggctgagatcctactaaaggacttcccgcatttcccacacataa
aagggttttccgactggcaagttttctgcctggcactctgaattaaggcc
ttcttactttcatgagttttctttccaatacaaactcttttatgtacaag
gactggctgctttttgaagcctcttttgtatttattgtatttttgtattt
tctttctgttgtgactcctcttatgaagtaaaagggatgacatccgactg
aagactttcccacacttcctgcactggtgaacgctgtcagtagtgtgatt
attacggtgtagactgagggaggggcatgaatctgaggccttctcatggt
gaaaactttcctttccattatgaattcttctatgtatcataagagttaac
tttttattaaaaatgtccccacacttatcacattcatagcttttattcca
attgtgaacccgctgatgaagaatgagggataagatctgcctgaaaacgt
gtctacaagtactgcattcataagacctctctccagtgtgaaagtcttga
tgaagtttaagagataagcttcgaaaaaaggttttcccacaaagattaca
ctttaaagatttcttgcctgaatgttccttcttggatttgcttgggactg
aactcttgttatgttttgccttctctgtgggaaccttttgttgtgaagaa
gttggtttctcacagatgcttggcccagatttgtgacatgaatttggtgg
taacttcttggtctcatacttagaccctgattctgaaaacaccagaagtt
aggattagtagtgaagaatgaagctcggatataaaaaaggagtcattata
ttagtgattatacactcatgtacgagacatgtgtctaccatagtccatgc
tatattaagtctctgatgataatttatcattggggtgacaatacgattac
cttgaaaatgagggcctctgaagatatctactac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6138383_6139493
seq2: B6Ng01-140G20.b_46_1162

seq1  GAATTCCAGCACTCAGGAGGCAGAGGTAGAGGCTGGCCTTGTAGTGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACTCAGGAGGCAGAGGTAGAGGCTGGCCTTGTAGTGAGTT  50

seq1  TAGAAGATGGCTCTCAGTCTGCAAAGCTAGAAACTGTCTGCTAGAAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATGGCTCTCAGTCTGCAAAGCTAGAAACTGTCTGCTAGAAACAG  100

seq1  GCAGAGCAGGTGCCTACAGAAGCCATACTGCTAGGAATGCTTACGAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAGGTGCCTACAGAAGCCATACTGCTAGGAATGCTTACGAGTCT  150

seq1  TGACCAGCAGGTGGAATTATATGCATGGCTAGTCAACTGTGCCTCTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGCAGGTGGAATTATATGCATGGCTAGTCAACTGTGCCTCTGCTG  200

seq1  TGTGATCTAGGTCACCCTCCCTCCAGCCAGTGGTCCAGTACAGTTAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTAGGTCACCCTCCCTCCAGCCAGTGGTCCAGTACAGTTAAGAC  250

seq1  GGGAGGTGAGGAGAGGGGTGCTGTGTGTGTAACTCCTGCATCTCTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGAGGAGAGGGGTGCTGTGTGTGTAACTCCTGCATCTCTCATTT  300

seq1  CCTAGCACCAGAGGAATTCTGAGAATCACTTCTTGGGAACATGAGCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACCAGAGGAATTCTGAGAATCACTTCTTGGGAACATGAGCTTAG  350

seq1  AAATCTACCCTGTGTCCTGCCTGGTTCTTAGCTTCATGCTTTTCTGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACCCTGTGTCCTGCCTGGTTCTTAGCTTCATGCTTTTCTGAGAT  400

seq1  AAAGGTTGCTTCAAATTTACATTTTACCCAGACACCAGCAGTTCAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGCTTCAAATTTACATTTTACCCAGACACCAGCAGTTCAAGTAA  450

seq1  GATTCAAAACAAAGGAATGAGTTACCTGTTACTTGATAGCAAATGCCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAAACAAAGGAATGAGTTACCTGTTACTTGATAGCAAATGCCCCC  500

seq1  AAAGCTATGAAGTTGTTGTGGGCCAGAGGGTAGGCGTGACTGGGGAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTATGAAGTTGTTGTGGGCCAGAGGGTAGGCGTGACTGGGGAAAGT  550

seq1  GGATCTGTCACAGGGCCTCTTGAAGAGGCCACAAGGTATTGACCATGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGTCACAGGGCCTCTTGAAGAGGCCACAAGGTATTGACCATGGCT  600

seq1  GTCACCACTTAAAGGCTGACTTGAGGCTAGAACCCCATTTCCACTGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCACTTAAAGGCTGACTTGAGGCTAGAACCCCATTTCCACTGAATT  650

seq1  TGCTTGCACTGGTTGACAGGAGACTGAGTTTGAACAGCCTGCAGCAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCACTGGTTGACAGGAGACTGAGTTTGAACAGCCTGCAGCAGCAG  700

seq1  CAGCCAGCTTCCCTTCGGAGATGCAGCGAGGCAGCTCAGTGGCTAAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCTTCCCTTCGGAGATGCAGCGAGGCAGCTCAGTGGCTAAAGGT  750

seq1  CCTTGTCATCAAGCCTGATGAGGAACTGAGCCTCACATGGTGAGGAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCATCAAGCCTGATGAGGAACTGAGCCTCACATGGTGAGGAGGAA  800

seq1  GCCAACTGTCAAGAGTCATTCTCTTGACCTTCATATGTACAATGTATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTGTCAAGAGTCATTCTCTTGACCTTCATATGTACAATGTATTTC  850

seq1  CCATCCCTG--ACACACACACACACACACACACACACACACACACACACA  898
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTGACACACACACACACACACACACACACACACACACACACACA  900

seq1  CACACACACACACACGGTAGAGAGAAGGCTCTTCAGTTAAAAGC-TCTTG  947
      |||||||||||||||||||||||||||  |||||| |||||||| |||||
seq2  CACACACACACACACGGTAGAGAGAAGCTTCTTCATTTAAAAGCTTCTTG  950

seq1  CTGCTCCTGCA-GAGGACTGGAGTTTGGTTCCCAGTGCCCACGCCAGGTG  996
      ||||| ||||| |||||||||||||||| |||||||| ||||||||||||
seq2  CTGCT-CTGCAGGAGGACTGGAGTTTGGGTCCCAGTG-CCACGCCAGGTG  998

seq1  GC-TCACGACTTCCTGTAACTTCAGCTCCA-GAGGATTGGAT-GCACACT  1043
      || |||||||||||||| ||||||||| || ||||||||||| |||||||
seq2  GCTTCACGACTTCCTGT-ACTTCAGCTTCAGGAGGATTGGATGGCACACT  1047

seq1  CTTACAT-GTATGC-TCATGTACCAACCCCCAAAACCACAGAAATGAGTC  1091
      ||||||| |||||| |||||||||||| ||| ||||||||||| ||||||
seq2  CTTACATGGTATGCTTCATGTACCAACTCCCCAAACCACAGAATTGAGTC  1097

seq1  TTCAG-TGAAACCAAAACAAA  1111
      ||| | ||||||| |||||||
seq2  TTCTGATGAAACC-AAACAAA  1117

seq1: chr7_6255958_6257071
seq2: B6Ng01-140G20.g_66_1149 (reverse)

seq1  GTAGTTAAGATATCCTCAGAGGCCCTCCCTTCTTCTAGGTGATTCTGTAT  50
      |||||  ||||||| |||||||||||  | | ||| |||| ||   ||| 
seq2  GTAGT--AGATATCTTCAGAGGCCCT--CATTTTCAAGGTAAT--CGTA-  43

seq1  TTTGTCACACCAATGATTAAAAATAATCATCAGAAGACCTTAATATAGCA  100
       ||||||| ||||||||   |||| |||||||| ||| ||||||||||| 
seq2  -TTGTCACCCCAATGAT---AAATTATCATCAG-AGA-CTTAATATAGC-  86

seq1  ATGGGAACTATGGTAAGACACATTGTTCTCGTTAACATTGGGTTGTTATA  150
      ||||  |||||||| ||||||||   ||||||  ||| || ||   ||||
seq2  ATGG--ACTATGGT-AGACACAT--GTCTCGT--ACA-TGAGT--GTATA  126

seq1  ATCACTAATTATAATGACTCCTTTTTTTATTATCCGAGCTTCATTTCTTC  200
      |||||||| ||||||||||||||||||   ||||||||||||| ||||||
seq2  ATCACTAA-TATAATGACTCCTTTTTT--ATATCCGAGCTTCA-TTCTTC  172

seq1  ACTACTAATCCTAACTTCTTGGTGTTTTTCAGAATCAGGGTCTAAGTATG  250
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  ACTACTAATCCTAACTTC-TGGTG-TTTTCAGAATCAGGGTCTAAGTATG  220

seq1  AGACCAAGAAGTTACCACCAAATTCATGTCACAAATCTGGGCCAAGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAGAAGTTACCACCAAATTCATGTCACAAATCTGGGCCAAGCATC  270

seq1  TGTGAGAAACCAACTTCTTCACAACAAAAGGTTCCCACAGAGAAGGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAACCAACTTCTTCACAACAAAAGGTTCCCACAGAGAAGGCAAA  320

seq1  ACATAACAAGAGTTCAGTCCCAAGCAAATCCAAGAAGGAACATTCAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACAAGAGTTCAGTCCCAAGCAAATCCAAGAAGGAACATTCAGGCA  370

seq1  AGAAATCTTTAAAGTGTAATCTTTGTGGGAAAACCTTTTTTCGAAGCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTTTAAAGTGTAATCTTTGTGGGAAAACCTTTTTTCGAAGCTTA  420

seq1  TCTCTTAAACTTCATCAAGACTTTCACACTGGAGAGAGGTCTTATGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAAACTTCATCAAGACTTTCACACTGGAGAGAGGTCTTATGAATG  470

seq1  CAGTACTTGTAGACACGTTTTCAGGCAGATCTTATCCCTCATTCTTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTTGTAGACACGTTTTCAGGCAGATCTTATCCCTCATTCTTCATC  520

seq1  AGCGGGTTCACAATTGGAATAAAAGCTATGAATGTGATAAGTGTGGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGTTCACAATTGGAATAAAAGCTATGAATGTGATAAGTGTGGGGAC  570

seq1  ATTTTTAATAAAAAGTTAACTCTTATGATACATAGAAGAATTCATAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATAAAAAGTTAACTCTTATGATACATAGAAGAATTCATAATGG  620

seq1  AAAGGAAAGTTTTCACCATGAGAAGGCCTCAGATTCATGCCCCTCCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGTTTTCACCATGAGAAGGCCTCAGATTCATGCCCCTCCCTCA  670

seq1  GTCTACACCGTAATAATCACACTACTGACAGCGTTCACCAGTGCAGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACACCGTAATAATCACACTACTGACAGCGTTCACCAGTGCAGGAAG  720

seq1  TGTGGGAAAGTCTTCAGTCGGATGTCATCCCTTTTACTTCATAAGAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAAGTCTTCAGTCGGATGTCATCCCTTTTACTTCATAAGAGGAG  770

seq1  TCACAACAGAAAGAAAATACAAAAATACAATAAATACAAAAGAGGCTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACAGAAAGAAAATACAAAAATACAATAAATACAAAAGAGGCTTCA  820

seq1  AAAAGCAGCCAGTCCTTGTACATAAAAGAGTTTGTATTGGAAAGAAAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGCCAGTCCTTGTACATAAAAGAGTTTGTATTGGAAAGAAAACT  870

seq1  CATGAAAGTAAGAAGGCCTTAATTCAGAGTGCCAGGCAGAAAACTTGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGTAAGAAGGCCTTAATTCAGAGTGCCAGGCAGAAAACTTGCCA  920

seq1  GTCGGAAAACCCTTTTATGTGTGGGAAATGCGGGAAGTCCTTTAGTAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGAAAACCCTTTTATGTGTGGGAAATGCGGGAAGTCCTTTAGTAGGA  970

seq1  TCTCAGCCTTAATGCTCCATCAGAGAATTCACACTTCAGGGAATCCCTAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCTTAATGCTCCATCAGAGAATTCACACTTCAGGGAATCCCTAC  1020

seq1  AAATGTGATAAATGTCAGAAAGACTTTGGACGGCTCTCCACCCTTATTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGATAAATGTCAGAAAGACTTTGGACGGCTCTCCACCCTTATTCT  1070

seq1  GCACCTAAGAATTC  1114
      ||||||||||||||
seq2  GCACCTAAGAATTC  1084