BAC Information

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BAC

Clone NameB6Ng01-141D19
Chromosome7 (Build37)16 (Build37)
Map Location 19,455,826 - 19,456,57741,508,822 - 41,509,832
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2
Downstream genePglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141D19.bB6Ng01-141D19.g
ACCDH939744DH939745
length1,1491,000
definitionDH939744|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D19, 5' end.DH939745|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,455,826 - 19,456,577)(41,508,822 - 41,509,832)
sequence
gaattcactggtcttaccacattccccatcatcctgaagcagctgggctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggcagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaacggaatagttccacttactat
cactcctagtgaccctcttggaaaatttttgcttcctgtccccataactc
taggttctgctggcttagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacatttcattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgcaggaga
tcccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggacgcagaccca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggtgaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaggccacgtaaccagttgcagaaacgagga
ttataaagtaatatgaatgcccattgtaaatttactaatgcgttgcgatt
gtacgagggatagttatatcatgttaggcgtatttacaaccttgttattg
tttcatgtgaacatgagatattatttgtgtcaagtgacaggggtggattg
tagtggctattcctggtgtcacttgacattatttggatgaactacaatcc
gaattggaagcttaccagttgacctttatctgaggctggagaatctttat
ctggatctggttgaagaatctggagcctaaggctatgaattccgaagatt
gaattctcgaagtaggaaacaccttaatctgggtatgcctttatctggg
gaattcatctctttaatctataaatgattaaataccagttcttgggataa
ttactaatttaatctcacgtgcatgaggaagaaggaaaaaatagactagc
aaataaaagttacaacagaagtaaaaatgattaaaacactggagtgggaa
gactttgatgagaatgtggagtgggaaaaacaactaaatcttaaaatgac
tttcaaacagatttctgtggttcatttctttcatttttggagaatctgct
tcgtaaaggatgggcaaatggaatggtgtctatctgccttgcctcttcat
aaatgagatgctaccattatcaccctctcagacataaggaaacattgatg
ctaaaaggaaaacctgcccaaggatacgccatggagcaaattctacacag
attggttatttgaaaacagagtgttctcctgcttttttctagcccaacac
aaatatatattgagtgatagtccacatccaattatgagacagaattgttg
taagagagtacaggtcatggtacaataaaaaaaaataaatctagtgagat
acaaaatcagcttactctgaatctatcagaacagtgacattacaaagggt
ccattaataaacttagactagagacacattttacataggaaaaaaaaaaa
aaaaacctcaaaagctttttcctggttagcagaaaaggaagaaagtgtgc
cactaacaagggaaataaacataatctttaacaaaatctaagtcttgcat
atgcagtgctaagagtgattagtttcaaagcctccaagcacagaataaac
ctgccagtgctgccaggatatattgtctgagtctagcctgactataagta
aaggtcccaagtgtcaaaggcaaaggaaacctcagaggagagttgattag
gcaaaacacatggattttagggcatgatatcatacttacacatatgatcc
aggtacatgtcattttatatttgtctaactcgtagatgcaccagggcaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19455826_19456577
seq2: B6Ng01-141D19.b_462_1196

seq1  TTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGTGTTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGTGTTAGGA  50

seq1  GGGGTGATAGATCCAGATTACCATGGGGAAATTGGATTACCTCTTCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGATAGATCCAGATTACCATGGGGAAATTGGATTACCTCTTCACAA  100

seq1  TGGTGGTAAGCAAGATTATGTCTGGAGTGCAGGAGATCCCTTAGGGCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTAAGCAAGATTATGTCTGGAGTGCAGGAGATCCCTTAGGGCGTC  150

seq1  TCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAACTACAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAACTACAACAG  200

seq1  CCTAATCCAAGCAGGATGACAAAGGACGCAGACCCATCAGGAATGAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCCAAGCAGGATGACAAAGGACGCAGACCCATCAGGAATGAAGGT  250

seq1  ATGGGTCAATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGGTGCTGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCAATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGGTGCTGGCTG  300

seq1  AAGGTGAAGGAAATACAGAATGGGTAGTAGAGGAAGGTAGTTATAAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAGGAAATACAGAATGGGTAGTAGAGGAAGGTAGTTATAAATAC  350

seq1  CAATTAAGGCCACGTAACCAGTTGCAGAAACGAGGATTATAAAGTAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAGGCCACGTAACCAGTTGCAGAAACGAGGATTATAAAGTAATAT  400

seq1  GAATGCCCATTGTAAATTTACTAATGCGTTTGCGATTGTACGAGGGATAG  450
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATGCCCATTGTAAATTTACTAATGCG-TTGCGATTGTACGAGGGATAG  449

seq1  TTATATCATGTTAGGCGTATTTACAACCTTGTTATTGTTTCATGTGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCATGTTAGGCGTATTTACAACCTTGTTATTGTTTCATGTGAACA  499

seq1  TGAGATATTATTTGTGTCAAGTTGACAAGGGGTGGATTGTAGTGGCTATT  550
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  TGAGATATTATTTGTGTCAAG-TGAC-AGGGGTGGATTGTAGTGGCTATT  547

seq1  CCTGGTTGTCAACTTGACAATATTTGGAATGAACTACAATCCGGAATTGG  600
      ||||| |||| |||||||| ||||||| |||||||||||||| |||||||
seq2  CCTGG-TGTC-ACTTGACATTATTTGG-ATGAACTACAATCC-GAATTGG  593

seq1  AAGGCTCACCAG-TGACCCTTATCTGGAGGCTTGGAG-ATCCTTATCTGG  648
      || ||| ||||| ||||| |||||| ||||| ||||| ||| ||||||||
seq2  AA-GCTTACCAGTTGACCTTTATCT-GAGGC-TGGAGAATCTTTATCTGG  640

seq1  ATCTTGGTTTGAAG-ATCTTGAGCCGTAGTGGCTATGGATTCCAGAAGAT  697
      ||||  | |||||| |||| |||||  |  ||||||| ||||| ||||||
seq2  ATCT--GGTTGAAGAATCTGGAGCCTAA--GGCTATGAATTCC-GAAGAT  685

seq1  TGAA-TCTCCGAGTTAAGGAACACACCTTTAATCTGGGCTATGCCTTTCA  746
      |||| ||||  |||  ||||| ||||| |||||||||| ||||||||| |
seq2  TGAATTCTCGAAGT--AGGAA-ACACC-TTAATCTGGG-TATGCCTTT-A  729

seq1  TCTGGG  752
      ||||||
seq2  TCTGGG  735

seq1: chr16_41508822_41509832
seq2: B6Ng01-141D19.g_66_1065 (reverse)

seq1  TCTGCCCT-GTGCAATCTACGAGTTTAGACAAATATAAAATGACATGTAC  49
      |||||||| |||| ||||||||| ||||||||||||||||||||||||||
seq2  TCTGCCCTGGTGC-ATCTACGAG-TTAGACAAATATAAAATGACATGTAC  48

seq1  CTGGGATCATATTGTTGTAAAGTATGATATCATTGCCCTAAAAATCCATG  99
      || |||||||||   ||| ||||||||||||| |||||| ||||||||||
seq2  CT-GGATCATAT--GTGT-AAGTATGATATCA-TGCCCT-AAAATCCATG  92

seq1  TTGTTTTTGCCTATTCAACTCTCCTCTGAGGTTTCCTTTGCCTTTTGACA  149
      |   ||||||||| |||||||||||||||||||||||||||| |||||||
seq2  T--GTTTTGCCTAATCAACTCTCCTCTGAGGTTTCCTTTGCC-TTTGACA  139

seq1  CTTGGGACCTGTACTTAATAGTCAGGCTAGACTCAGACAATATATCCTGG  199
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  CTTGGGACCTTTACTT-ATAGTCAGGCTAGACTCAGACAATATATCCTGG  188

seq1  CAGCACTGGCAGGTTTATTCTGTGCTTGGAGGCTTTGAAACTAATCACTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGGCAGGTTTATTCTGTGCTTGGAGGCTTTGAAACTAATCACTC  238

seq1  TTAGCACTGCATATGCAAGACTTAGATTTTGTTAAAGATTATGTTTATTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTGCATATGCAAGACTTAGATTTTGTTAAAGATTATGTTTATTT  288

seq1  CCCTTGTTAGTGGCACACTTTCTTCCTTTTCTGCTAACCAGGAAAAAGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTTAGTGGCACACTTTCTTCCTTTTCTGCTAACCAGGAAAAAGCT  338

seq1  TTTGAGGTTTTTTTTTTTTTTTTCCTATGTAAAATGTGTCTCTAGTCTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGTTTTTTTTTTTTTTTTCCTATGTAAAATGTGTCTCTAGTCTAA  388

seq1  GTTTATTAATGGACCCTTTGTAATGTCACTGTTCTGATAGATTCAGAGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTAATGGACCCTTTGTAATGTCACTGTTCTGATAGATTCAGAGTA  438

seq1  AGCTGATTTTGTATCTCACTAGATTTATTTTTTTTTATTGTACCATGACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTTTGTATCTCACTAGATTTATTTTTTTTTATTGTACCATGACC  488

seq1  TGTACTCTCTTACAACAATTCTGTCTCATAATTGGATGTGGACTATCACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCTCTTACAACAATTCTGTCTCATAATTGGATGTGGACTATCACT  538

seq1  CAATATATATTTGTGTTGGGCTAGAAAAAAGCAGGAGAACACTCTGTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATATTTGTGTTGGGCTAGAAAAAAGCAGGAGAACACTCTGTTTT  588

seq1  CAAATAACCAATCTGTGTAGAATTTGCTCCATGGCGTATCCTTGGGCAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACCAATCTGTGTAGAATTTGCTCCATGGCGTATCCTTGGGCAGG  638

seq1  TTTTCCTTTTAGCATCAATGTTTCCTTATGTCTGAGAGGGTGATAATGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTTAGCATCAATGTTTCCTTATGTCTGAGAGGGTGATAATGGT  688

seq1  AGCATCTCATTTATGAAGAGGCAAGGCAGATAGACACCATTCCATTTGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTCATTTATGAAGAGGCAAGGCAGATAGACACCATTCCATTTGCC  738

seq1  CATCCTTTACGAAGCAGATTCTCCAAAAATGAAAGAAATGAACCACAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTACGAAGCAGATTCTCCAAAAATGAAAGAAATGAACCACAGAA  788

seq1  ATCTGTTTGAAAGTCATTTTAAGATTTAGTTGTTTTTCCCACTCCACATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTGAAAGTCATTTTAAGATTTAGTTGTTTTTCCCACTCCACATT  838

seq1  CTCATCAAAGTCTTCCCACTCCAGTGTTTTAATCATTTTTACTTCTGTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAAAGTCTTCCCACTCCAGTGTTTTAATCATTTTTACTTCTGTTG  888

seq1  TAACTTTTATTTGCTAGTCTATTTTTTCCTTCTTCCTCATGCACGTGAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTATTTGCTAGTCTATTTTTTCCTTCTTCCTCATGCACGTGAGA  938

seq1  TTAAATTAGTAATTATCCCAAGAACTGGTATTTAATCATTTATAGATTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAGTAATTATCCCAAGAACTGGTATTTAATCATTTATAGATTAA  988

seq1  AGAGATGAATTC  1011
      ||||||||||||
seq2  AGAGATGAATTC  1000