BAC Information

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BAC

Clone NameB6Ng01-142E12
Chromosome7 (Build37)
Map Location 21,059,642 - 21,060,827
singlet/doubletsinglet
Overlap geneLOC100042971
Upstream gene4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968
Downstream geneEG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135, LOC100042996, EG667273, EG667268, EG667262, EG667259, LOC100043574, LOC100043576, Gm1447, LOC100043006, LOC100043583, EG435953, LOC673902, EG667240, EG435951, Gm1446, LOC381937, LOC100043588, LOC670764, EG667215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142E12.bB6Ng01-142E12.g
ACCDH940516DH940517
length1,169936
definitionDH940516|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E12, 5' end.DH940517|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttacacaactttattattatgtacagtcttacatgttattcc
catacacattatttttaccatgttactattacataaggtaattcaattca
ttattttttatgctgcatttgtatattcttttaatttttattgattgtgt
tacatcccatttgaagcctcccctcccttccaattgtattgaattctgat
catggaatcacagactcaaactcgtctctttcatgtctgtattcatatgc
aaagctcacggtgtgttaaaatgtgtgttattgtattcctgatctactga
accaataaagacgtagcttcagtacaaaatggatctcaaggcagagtaat
tcaaaaagtataaaataacattctgagttactgtacatgcattgttttcc
agacaatgttcctgtggtgtgagagaatagtgtctcgcttatcaagttaa
gaaattgtctcaaatcaattggtaagtgtggacaatagaacagagcccag
agaagagtagtgtcctactaatcaagactcgagggtcctgtaaagccctc
tccatgtctgttcgtggtaaatccctgaaaaccactgaggaagtggctct
tcagatcattttgctttgccagtttggggttgggaccatggccaatgact
ttctgtttgtccataatttctctccagtcttgactggttctaaacagagg
cccagacaggtgattctaagccacatggctgtggccaatgccttgactct
attcctcactgtatttccaaacaacatgatggcttttgctccaagaaacc
ctccaactgaactgaaatgtaaattaaaattcttcagtcacctggtgaca
agaagcacaaatttgtgttccacctgtgtcctgagtatgcatcagtttgt
cactctggttcctattagtagaggtaaacttctactcagagcagtgtccc
aaatttggtggagttattctgttacgttgtggtttttcagtgtcttagta
cattcacattccattagtcactggtccacagatacgacatacactgactc
taaagcaagtttttctgttccacttctggaatcactgtaagattgtcttc
ttggcaatttccatgaagtcaattcatgagaccatctatggtctgacaag
gtttccatggtacctcctc
gaattcagaactcttcagctggggaacggtggtaatgaagtgttcccata
aaacagactgttgagaaggattcaactgcgtgaattcagaactcttcagc
tggggaacggtggtaatgaagtgttcccgtaaaacagactgttgagaagg
attcaactgcgtgaattcagaactcttcagctggggaacagggtacccgt
aagtatagctttacaaggtaagtctggtcttgaactttctaacgaaattc
aagacagtctatcagaagtaaagtgggaaatagctttacaaggtacgtct
ggccttgaacttcctaacgaaattcaagacagtctatcagaagtaaagtg
ggaaatagctttacaaggtatgtttggccttgaactttctctagtgttag
gagtctttttgttccttttcacatgttatcaagtggttaaggcagggctg
aaaattctggatgaaattcagggcaatctatcagaagtaaagcggggaga
gagagtaggagcaaagaggaaatatggtacacaaaataagtatacaggcc
tttccacgggtcttgaacctgaggaaaagtttaggtcaggtaagaatacc
tggggagagattagaaggaaggaaaagaaaaaagatcaatcagcggaggt
ctctaggagaaggagcctatactcatcactaggtgagctcaagagccagt
tcttaatagttctgaatcagatgaaaaggctattagggcctggaaagcgc
tctcccaagcaggtgaagccactggatacctaacaaagatcgtccaggga
cctcagagtcattctcagatttgtggccagaatgacagaggcagcagacg
tattttgagattcagagcaagccgcacctctggtagaatagctaattatg
agcaagcacgcaggatgcgagcggccataccccaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_21059642_21060827
seq2: B6Ng01-142E12.b_49_1217 (reverse)

seq1  GAGGAGAAGTACCATGGAGACACTGGTCCAGACCAT-GATG--CTCATGA  47
      ||||||  |||||||||| || || || |||||||| ||||  |||||||
seq2  GAGGAG--GTACCATGGAAAC-CTTGT-CAGACCATAGATGGTCTCATGA  46

seq1  ATGTGGCATCATGGGAAAACTG-CAAGAAGACAATTCTTACAGTGAATCC  96
      || || | ||||||  ||| || ||||||||||| ||||||||||| |||
seq2  AT-TGACTTCATGG--AAATTGCCAAGAAGACAA-TCTTACAGTGATTCC  92

seq1  AGAAGTGGAACAGAAAAACTTGCTTTTAGAGTCAGTGTTATTGTCTGTTA  146
      ||||||||||||||||||||||| ||||||||||||||   ||||   ||
seq2  AGAAGTGGAACAGAAAAACTTGC-TTTAGAGTCAGTGT--ATGTC--GTA  137

seq1  TCTGTGGACCAGTGACCTTAATTGGAATGTGAATGTTACTTAAGACACTG  196
      ||||||||||||||||  ||| ||||||||||||| ||| ||||||||||
seq2  TCTGTGGACCAGTGAC--TAA-TGGAATGTGAATG-TAC-TAAGACACTG  182

seq1  AAAAACCAACAACCGTAACAAGAATAACT-CACCAAATTTGGGACACTTG  245
      ||||||| |||| |||||| ||||||||| ||||||||||||||||| ||
seq2  AAAAACC-ACAA-CGTAAC-AGAATAACTCCACCAAATTTGGGACAC-TG  228

seq1  CTCTGAGTAGAAGTTTACCTCTACTAATAGGAACCAGAGTGACAAACTGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTAGAAGTTTACCTCTACTAATAGGAACCAGAGTGACAAACTGA  278

seq1  TGCATACTCAGGACACAGGTGGAACACAAATTTGTGCTTCTTGTCACCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACTCAGGACACAGGTGGAACACAAATTTGTGCTTCTTGTCACCAG  328

seq1  GTGACTGAAGAATTTTAATTTACATTTCAGTTCAGTTGGAGGGTTTCTTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGAAGAATTTTAATTTACATTTCAGTTCAGTTGGAGGGTTTCTTG  378

seq1  GAGCAAAAGCCATCATGTTGTTTGGAAATACAGTGAGGAATAGAGTCAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAAGCCATCATGTTGTTTGGAAATACAGTGAGGAATAGAGTCAAG  428

seq1  GCATTGGCCACAGCCATGTGGCTTAGAATCACCTGTCTGGGCCTCTGTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGCCACAGCCATGTGGCTTAGAATCACCTGTCTGGGCCTCTGTTT  478

seq1  AGAACCAGTCAAGACTGGAGAGAAATTATGGACAAACAGAAAGTCATTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGTCAAGACTGGAGAGAAATTATGGACAAACAGAAAGTCATTGG  528

seq1  CCATGGTCCCAACCCCAAACTGGCAAAGCAAAATGATCTGAAGAGCCACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTCCCAACCCCAAACTGGCAAAGCAAAATGATCTGAAGAGCCACT  578

seq1  TCCTCAGTGGTTTTCAGGGATTTACCACGAACAGACATGGAGAGGGCTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGTGGTTTTCAGGGATTTACCACGAACAGACATGGAGAGGGCTTT  628

seq1  ACAGGACCCTCGAGTCTTGATTAGTAGGACACTACTCTTCTCTGGGCTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACCCTCGAGTCTTGATTAGTAGGACACTACTCTTCTCTGGGCTCT  678

seq1  GTTCTATTGTCCACACTTACCAATTGATTTGAGACAATTTCTTAACTTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTGTCCACACTTACCAATTGATTTGAGACAATTTCTTAACTTGA  728

seq1  TAAGCGAGACACTATTCTCTCACACCACAGGAACATTGTCTGGAAAACAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCGAGACACTATTCTCTCACACCACAGGAACATTGTCTGGAAAACAA  778

seq1  TGCATGTACAGTAACTCAGAATGTTATTTTATACTTTTTGAATTACTCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTACAGTAACTCAGAATGTTATTTTATACTTTTTGAATTACTCTG  828

seq1  CCTTGAGATCCATTTTGTACTGAAGCTACGTCTTTATTGGTTCAGTAGAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGATCCATTTTGTACTGAAGCTACGTCTTTATTGGTTCAGTAGAT  878

seq1  CAGGAATACAATAACACACATTTTAACACACCGTGAGCTTTGCATATGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATACAATAACACACATTTTAACACACCGTGAGCTTTGCATATGAA  928

seq1  TACAGACATGAAAGAGACGAGTTTGAGTCTGTGATTCCATGATCAGAATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACATGAAAGAGACGAGTTTGAGTCTGTGATTCCATGATCAGAATT  978

seq1  CAATACAATTGGAAGGGAGGGGAGGCTTCAAATGGGATGTAACACAATCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAATTGGAAGGGAGGGGAGGCTTCAAATGGGATGTAACACAATCA  1028

seq1  ATAAAAATTAAAAGAATATACAAATGCAGCATAAAAAATAATGAATTGAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTAAAAGAATATACAAATGCAGCATAAAAAATAATGAATTGAA  1078

seq1  TTACCTTATGTAATAGTAACATGGTAAAAATAATGTGTATGGGAATAACA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTATGTAATAGTAACATGGTAAAAATAATGTGTATGGGAATAACA  1128

seq1  TGTAAGACTGTACATAATAATAAAGTTGTGTAAGTGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGACTGTACATAATAATAAAGTTGTGTAAGTGAATTC  1169