BAC Information

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BAC

Clone NameB6Ng01-143J16
Chromosome7 (Build37)
Map Location 25,012,487 - 25,139,232
singlet/doubletdoublet
Overlap geneZfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5
Upstream geneLOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111
Downstream geneKcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143J16.bB6Ng01-143J16.g
ACCDH941497DH941498
length1,2171,053
definitionDH941497|Mus musculus domesticus DNA, BAC clone: B6Ng01-143J16, 5' end.DH941498|Mus musculus domesticus DNA, BAC clone: B6Ng01-143J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,012,487 - 25,013,489)(25,138,171 - 25,139,232)
sequence
gaattctgaagcttctagcatatttcctatcaatagctaatcaatttcat
cactgccttgtactagagggcctgatgggcctccatgggatctgatgtgt
tatatacaatggatggtttcctcttctgatcaattattgtagttgagtaa
acagtgaggtcaattttgaatcatcctgagtaagctcagcagtttctata
ggcaaaacaattcttagtaagaaattcaggaaaatctaacaataccctga
ggatggtatacaactctgatttttgagctgaatcatatttgtgctttgaa
tgacttcggcttaattttttctcacatgtcagaaaaattccaaattgttt
gcattagtataagatgtaagagcttcaggaattggtgttctttttactat
atggaggggggagagaactaaagtcacttgcttttaggatatttgctgtt
aatttctcccaaatagatactgcaacctctttaccaattcttgattgcct
ataatgatacaaattcagcgttagtatgaggcacgatttctgctagatct
gctcctgacacctgacaattcttccttttataactaattcagatatttca
gatattaaattagatagaaaattagaaatccgatcttctctatataagtt
ttgaatttgtttactttgtattctaagatccattctaaaatacggtcttt
ccctttgcataatgaaatgaggtacagtaagataaagacttcatgggaaa
ataaccaaaatataatccccagtgaaatctgctaacgcttctgggtttaa
gggaggcttttaacaagcagcagcatggagcccacccgacagcagaacaa
acctagagattcgctgccctgtgaccctctggtgtttgacgagaatgcga
tctctggctgaaggcttttgcagcagtgccgcagatgtagggtcttttcc
cagtgtggacccgccggtgtcttcgaagattgaagctgactgaaaccctt
ccacactcccacctgtaggtttctcttcttggtgacttcctgtgagacct
agccgaacgctgctgaatcctcccacctctccactgaacggctcctctcg
gtgtgaaatctctgtgaactggaaagacctctggctaggctcccagcgtc
catgatgctccctggtgtatcgaacttgaaatgacctcgcaagtctttcc
acacacacgcaatgaaa
gaattcactccgtagacgaagttgactttaaactcagacctgcctctgcc
tccgtggtgctgagattaaaggtgtgtgccaccatgcctgaaagggtctc
acactgtaattcaggctggacctaaactagcaatgtagtccagcttggcc
ttgaagtagctatcctcctgcctcagcctcctgagtgctgggacaacagc
ctggtattaccactagccttgctagaagtgggtttttaaggtgagtggca
tggtttgttgtgagagggtcacaaaaggctcatgtattgaaggcttggtg
accaggggatggcactattgaaagctggttggacctcgttcaatgcactg
gatagatgggccttccaggaggtggggccagcggcagtaaggagggacag
agagcagggtggaaggttgtgactggagggacaggagtgcagctcttatt
ttcacatcatttttaaaggagcccacaccaggggctggagtgatgagttg
cggagcgatcctggaggtgctgtctatgcagggaacccgacggacgcccc
tagagcgatggccagtagtggagcagccgtcagcagggtcaggattcggg
gagctctgggaggggccgaggacatggtgccaggcaggatctgtgtcacc
gaggccctgttgcagaggtggccctcgcagcagtaaccctgcaggtcgat
ggatgtccaggggctggtggtgcccatggtggtgcaggagggcccgtgac
aggtccggatgtacacgggcaccgagaagttgcctggttggacagtgaga
aggggtcaggcctcggtcctcttaccacatttcaaggctcattggaaact
aggaccacatctcttagtgcgaacaagcctcttcttttagacagaggcag
tctcctttcttgacatggatggcctcctcctcagtctacaacaggcattt
actttagatcaagaacatgtctccttcagtctagaccatacccgttcctc
agactcagtctgtgcttctccctcagaacaagaccagagactgctctctg
gta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25012487_25013489
seq2: B6Ng01-143J16.b_316_1261

seq1  TTTGAGCTGAATCATATTTGTGCTTTGAATGACTTCGGCTTAATTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTGAATCATATTTGTGCTTTGAATGACTTCGGCTTAATTTTTTC  50

seq1  TCACATGTCAGAAAAATTCCAAATTGTTTGCATTAGTATAAGATGTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTCAGAAAAATTCCAAATTGTTTGCATTAGTATAAGATGTAAGA  100

seq1  GCTTCAGGAATTGGTGTTCTTTTTACTATATGGAGGGGGGAGAGAACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGGAATTGGTGTTCTTTTTACTATATGGAGGGGGGAGAGAACTAA  150

seq1  AGTCACTTGCTTTTAGGATATTTGCTGTTAATTTCTCCCAAATAGATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTGCTTTTAGGATATTTGCTGTTAATTTCTCCCAAATAGATACT  200

seq1  GCAACCTCTTTACCAATTCTTGATTGCCTATAATGATACAAATTCAGCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTCTTTACCAATTCTTGATTGCCTATAATGATACAAATTCAGCGT  250

seq1  TAGTATGAGGCACGATTTCTGCTAGATCTGCTCCTGACACCTGACAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGAGGCACGATTTCTGCTAGATCTGCTCCTGACACCTGACAATTC  300

seq1  TTCCTTTTATAACTAATTCAGATATTTCAGATATTAAATTAGATAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTATAACTAATTCAGATATTTCAGATATTAAATTAGATAGAAAA  350

seq1  TTAGAAATCCGATCTTCTCTATATAAGTTTTGAATTTGTTTACTTTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATCCGATCTTCTCTATATAAGTTTTGAATTTGTTTACTTTGTAT  400

seq1  TCTAAGATCCATTCTAAAATACGGTC-TTCCCTTTGCATAATGAAATGAG  449
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTAAGATCCATTCTAAAATACGGTCTTTCCCTTTGCATAATGAAATGAG  450

seq1  GTACAGTAAGATAAAGACTTCATGGGAAAATAACCAAAATATAATCCCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTAAGATAAAGACTTCATGGGAAAATAACCAAAATATAATCCCCA  500

seq1  GTGAAATCTGCTAACGCTTCTGGGTTTAAGGGAGGCTTTTAACAAGCAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCTGCTAACGCTTCTGGGTTTAAGGGAGGCTTTTAACAAGCAGC  550

seq1  AGCATGGAGCCCACCCGACAGCAGAACAAACCTAGAGATTCGCTGCACTG  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCATGGAGCCCACCCGACAGCAGAACAAACCTAGAGATTCGCTGCCCTG  600

seq1  TGGACCCTCTGGTGTTTGACGAG-ATGCGATCTCTGGCTGAA-GCCTTTG  647
      | ||||||||||||||||||||| |||||||||||||||||| || ||||
seq2  T-GACCCTCTGGTGTTTGACGAGAATGCGATCTCTGGCTGAAGGCTTTTG  649

seq1  CAGCAGGTGCCGCAGATGTAGGGCCTTTCCCCAGTGTGGACCCGCCGGTG  697
      ||||| ||||||||||||||||| |||| |||||||||||||||||||||
seq2  CAGCA-GTGCCGCAGATGTAGGGTCTTTTCCCAGTGTGGACCCGCCGGTG  698

seq1  TCTTTCGAAGAGTGAGGGCTGACTGAAACCCTTCCCACACTCCCAACACG  747
      || |||||||| |||  |||||||||||||||| |||||||||   ||| 
seq2  TC-TTCGAAGATTGA-AGCTGACTGAAACCCTT-CCACACTCC---CACC  742

seq1  TGTAGGGTTTCTCTTCCTTGTGGACTATCTGGTGAGAACTCAGCCCCGAA  797
      |||| |||||||||| ||||  |||| ||  |||||| || ||  |||||
seq2  TGTA-GGTTTCTCTT-CTTGGTGACT-TCCTGTGAGACCT-AG--CCGAA  786

seq1  CGCTGCCTGAATTCCTTCCCACACTCCTCACACTTGAACGGCTTCTCCCC  847
      ||||| ||||||  | |||||| |||  |||   ||||||||| || | |
seq2  CGCTG-CTGAAT--CCTCCCAC-CTCTCCAC---TGAACGGCTCCT-CTC  828

seq1  GGTGTGAGTTCTCTGGTGGACTTGGAGATGGGCCCTCTGGCTGAAGGCTT  897
      |||||||  ||||| ||| || |||| |   | |||||||||  ||||| 
seq2  GGTGTGAAATCTCT-GTGAAC-TGGAAA---GACCTCTGGCT--AGGCT-  870

seq1  TCCCACAGCTGTCGCATTTGTAGGGCTTCTCTCCCGTGTGCATTCTCTGG  947
         | |||| ||| |||                     |||  || ||||
seq2  ---CCCAGC-GTC-CAT-------------------GATGC--TCCCTGG  894

seq1  TGAATCTGAA---GATATGAGCTCCGGCTAAAGTCTTTCCCACACACATC  994
      || ||| |||   || |||| |||  ||  |||||||| ||||||||| |
seq2  TGTATC-GAACTTGAAATGACCTC--GC--AAGTCTTT-CCACACACA-C  937

seq1  GCAATGAAA  1003
      |||||||||
seq2  GCAATGAAA  946

seq1: chr7_25138171_25139232
seq2: B6Ng01-143J16.g_68_1120 (reverse)

seq1  TACCAGAGAAGCATGGTTCTCTGTGGTCTTGTGTCTGAGGGAGGAAGCA-  49
      |||||||| ||||      ||| ||||||||| ||||||||| |||||| 
seq2  TACCAGAG-AGCA-----GTCTCTGGTCTTGT-TCTGAGGGA-GAAGCAC  42

seq1  AGACTGAGGTCTGAGGAAAGGGGTATGGTTCTAGACTGAAGGAGACATGT  99
      ||||||| |||||||| || |||||||| |||||||||||||||||||||
seq2  AGACTGA-GTCTGAGG-AACGGGTATGG-TCTAGACTGAAGGAGACATGT  89

seq1  CTCTGATCTAAGGGAAAAGGCCTGTTGTAGACTGAGGGAGGAGG-CATGC  148
         ||||||||  | ||| |||||||||||||||| |||||||| ||| |
seq2  TCTTGATCTAA-AGTAAATGCCTGTTGTAGACTGA-GGAGGAGGCCATCC  137

seq1  ATGTC-AGGAAGGAGACTGGCTCTGGTCTGAAGGAAGAGGCTTGTCTGCA  197
      ||||| || |||||||||| |||| |||| || ||||||||||||  |||
seq2  ATGTCAAGAAAGGAGACTGCCTCT-GTCTAAAAGAAGAGGCTTGTTCGCA  186

seq1  CTGAGAGATGTGGT-CTTGGTTCCAATGAGCCCTGAAATGTGGT-AGAGG  245
      || ||||||||||| || | |||||||||||| ||||||||||| |||||
seq2  CTAAGAGATGTGGTCCTAGTTTCCAATGAGCCTTGAAATGTGGTAAGAGG  236

seq1  ACCGAGGCCTGACCCCTTCTCACTGTCCACCCAGGCAACTTCTCGGTGCC  295
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACCGAGGCCTGACCCCTTCTCACTGTCCAACCAGGCAACTTCTCGGTGCC  286

seq1  CGTGTACATCCGGACCTGTCACCGGCCCTCCTGCACCACCATGGGCACCA  345
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CGTGTACATCCGGACCTGTCACGGGCCCTCCTGCACCACCATGGGCACCA  336

seq1  CCAGCCCCTGGACATCCATCGACCTGCAGGGTTACTGCTGCGAGGGCCAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCTGGACATCCATCGACCTGCAGGGTTACTGCTGCGAGGGCCAC  386

seq1  CTCTGCAACAGGGCCTCGGTGACACAGATCCTGCCTGGCACCATGTCCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAACAGGGCCTCGGTGACACAGATCCTGCCTGGCACCATGTCCTC  436

seq1  GGCCCCTCCCAGAGCTCCCCGAATCCTGACCCTGCTGACGGCTGCTCCAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTCCCAGAGCTCCCCGAATCCTGACCCTGCTGACGGCTGCTCCAC  486

seq1  TACTGGCCATCGCTCTAGGGGCGTCCGTCGGGTTCCCTGCATAGACAGCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCCATCGCTCTAGGGGCGTCCGTCGGGTTCCCTGCATAGACAGCA  536

seq1  CCTCCAGGATCGCTCCGCAACTCATCACTCCAGCCCCTGGTGTGGGCTCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGATCGCTCCGCAACTCATCACTCCAGCCCCTGGTGTGGGCTCC  586

seq1  TTTAAAAATGATGTGAAAATAAGAGCTGCACTCCTGTCCCTCCAGTCACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATGATGTGAAAATAAGAGCTGCACTCCTGTCCCTCCAGTCACA  636

seq1  ACCTTCCACCCTGCTCTCTGTCCCTCCTTACTGCCGCTGGCCCCACCTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCACCCTGCTCTCTGTCCCTCCTTACTGCCGCTGGCCCCACCTCC  686

seq1  TGGAAGGCCCATCTATCCAGTGCATTGAACGAGGTCCAACCAGCTTTCAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCCCATCTATCCAGTGCATTGAACGAGGTCCAACCAGCTTTCAA  736

seq1  TAGTGCCATCCCCTGGTCACCAAGCCTTCAATACATGAGCCTTTTGTGAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCATCCCCTGGTCACCAAGCCTTCAATACATGAGCCTTTTGTGAC  786

seq1  CCTCTCACAACAAACCATGCCACTCACCTTAAAAACCCACTTCTAGCAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCACAACAAACCATGCCACTCACCTTAAAAACCCACTTCTAGCAAG  836

seq1  GCTAGTGGTAATACCAGGCTGTTGTCCCAGCACTCAGGAGGCTGAGGCAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGGTAATACCAGGCTGTTGTCCCAGCACTCAGGAGGCTGAGGCAG  886

seq1  GAGGATAGCTACTTCAAGGCCAAGCTGGACTACATTGCTAGTTTAGGTCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAGCTACTTCAAGGCCAAGCTGGACTACATTGCTAGTTTAGGTCC  936

seq1  AGCCTGAATTACAGTGTGAGACCCTTTCAGGCATGGTGGCACACACCTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAATTACAGTGTGAGACCCTTTCAGGCATGGTGGCACACACCTTT  986

seq1  AATCTCAGCACCACGGAGGCAGAGGCAGGTCTGAGTTTAAAGTCAACTTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGCACCACGGAGGCAGAGGCAGGTCTGAGTTTAAAGTCAACTTC  1036

seq1  GTCTACGGAGTGAATTC  1062
      |||||||||||||||||
seq2  GTCTACGGAGTGAATTC  1053