BAC Information

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BAC

Clone NameB6Ng01-144J13
Chromosome7 (Build37)
Map Location 19,455,826 - 19,456,479
singlet/doubletsinglet
Overlap genenone
Upstream geneEG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2
Downstream genePglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144J13.bB6Ng01-144J13.g
ACCDH942234DH942235
length1,0551,180
definitionDH942234|Mus musculus domesticus DNA, BAC clone: B6Ng01-144J13, 5' end.DH942235|Mus musculus domesticus DNA, BAC clone: B6Ng01-144J13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactggtcttaccatgttccccatcatcctgaagcagctgggctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggtagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaagggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccatatctc
taggttctgctggcttagaagttttggctccagagaggggcgtgctccta
ccaggagctacaacaaacattccattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgtaggaga
tcccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggacacagaccca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggagaaggaaatacagaatggatagtagaggaag
gtagttataaataccaattaaggccacgtaaccagttgcagaaacgagga
ttataaagtaatatgaatacccactgtatatttacaaatgcgtttgcgat
tgtacgagggatagttatatcatgttaggcgtattcacaaccttgttatt
gtttcacgtgaacatgagatattatttgtgtcagttgacaggggtggatt
gtagtggttattcctggttgtcaacttgactatatttggaatgattacat
ccagatgaggctcacgtgacccttatctggagcttgagatcctatctgga
tcttg
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagacgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagattgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgcccgggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccaa
tggaggagctagagaagtagccaaggagctaaagagatctgcaaccctat
aggtggacacattatgagctaccagtacccggagctctggactctagctg
taataattattcaaagatgctagtcgcatacctggaaagagaaggcccat
tgacttgcacttaatggcccagtacaggcaacatatagcccatggccaat
gggggagtggtgtgcagggggagtggcgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19455826_19456479
seq2: B6Ng01-144J13.b_460_1100

seq1  TTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGTGTTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGTGTTAGGA  50

seq1  GGGGTGATAGATCCAGATTACCATGGGGAAATTGGATTACCTCTTCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGATAGATCCAGATTACCATGGGGAAATTGGATTACCTCTTCACAA  100

seq1  TGGTGGTAAGCAAGATTATGTCTGGAGTGCAGGAGATCCCTTAGGGCGTC  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGTGGTAAGCAAGATTATGTCTGGAGTGTAGGAGATCCCTTAGGGCGTC  150

seq1  TCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAACTACAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAACTACAACAG  200

seq1  CCTAATCCAAGCAGGATGACAAAGGACGCAGACCCATCAGGAATGAAGGT  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTAATCCAAGCAGGATGACAAAGGACACAGACCCATCAGGAATGAAGGT  250

seq1  ATGGGTCAATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGGTGCTGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCAATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGGTGCTGGCTG  300

seq1  AAGGTGAAGGAAATACAGAATGGGTAGTAGAGGAAGGTAGTTATAAATAC  350
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGGAGAAGGAAATACAGAATGGATAGTAGAGGAAGGTAGTTATAAATAC  350

seq1  CAATTAAGGCCACGTAACCAGTTGCAGAAACGAGGATTATAAAGTAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAGGCCACGTAACCAGTTGCAGAAACGAGGATTATAAAGTAATAT  400

seq1  GAATGCCCATTGTAAATTTACTAATGCGTTTGCGATTGTACGAGGGATAG  450
      |||| |||| |||| |||||| ||||||||||||||||||||||||||||
seq2  GAATACCCACTGTATATTTACAAATGCGTTTGCGATTGTACGAGGGATAG  450

seq1  TTATATCATGTTAGGCGTATTTACAACCTTGTTATTGTTTCATGTGAACA  500
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  TTATATCATGTTAGGCGTATTCACAACCTTGTTATTGTTTCACGTGAACA  500

seq1  TGAGATATTATTTGTGTCAAGTTGACAAGGGGTGGATTGTAGTGGCTATT  550
      |||||||||||||||||| ||||||| |||||||||||||||||| ||||
seq2  TGAGATATTATTTGTGTC-AGTTGAC-AGGGGTGGATTGTAGTGGTTATT  548

seq1  CCTGGTTGTCAACTTGACAATATTTGGAATGAACTACAATCCGGAATTGG  600
      |||||||||||||||||| |||||||||||| | ||| |||| ||  || 
seq2  CCTGGTTGTCAACTTGACTATATTTGGAATG-ATTAC-ATCCAGA--TG-  593

seq1  AAGGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGATCCTTATCTGGAT  650
       ||||||||  |||||||||||||||| |||| ||||||| |||||||||
seq2  -AGGCTCAC--GTGACCCTTATCTGGA-GCTT-GAGATCC-TATCTGGAT  637

seq1  CTTG  654
      ||||
seq2  CTTG  641