BAC Information

Click to search

BAC

Clone NameB6Ng01-145A15
Chromosome7 (Build37)
Map Location 109,590,303 - 109,754,171
singlet/doubletdoublet
Overlap geneRrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552
Upstream genePde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1
Downstream geneOlfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145A15.bB6Ng01-145A15.g
ACCDH942554DH942555
length5871,148
definitionDH942554|Mus musculus domesticus DNA, BAC clone: B6Ng01-145A15, 5' end.DH942555|Mus musculus domesticus DNA, BAC clone: B6Ng01-145A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,590,303 - 109,590,894)(109,752,997 - 109,754,171)
sequence
cgtccgtcgcgttgctctgcacgtcacgggtggcgggagcgggaaggagt
tcgtaattcggttagtctgctctggtgaggaaagtgctgtctatcgcgca
gcttccatccctccgtccgagcagcctctcggagtccaacccttcacatc
tgacagtcgtctctgtcccttcttcgcctcggagctgctaactggtctcg
aacctctcagcacttcagcttctagcggcgatgcatgtgatcaagcgagg
tgaggggtccgtggggatggggaggaggagaggggacccggctgcggaga
gcccagcggtcactatcgccggcccgcccgacccgcccgacccgcggcgc
ctcgccgcttcccgcgcttcccgccgcgcttcccgccctgtctgtcagct
gggcctgggtctgctcagtctgtccccattctcttgacctttgtgtgttc
cctttgactttgactttgtgctcccttccagactccctccaaccctgtct
gagattgttcccgagcactgttattccttgccgccatcctcagaggtagc
tgctttttggctccatttttttagaagaggttgcata
gaattccaaaatgtcgacaagtttgaatccaggcgggtgtcatttgtcaa
tggctagttatttttaaaaatcacatcaagataaaagtaagcatgaagat
cttggcagccctctgcttcctaacacaccattttcaattccaacaaactg
cctgctctcttctactgtccctccctcaccttgtttttttaagatttatt
tatttatgttatgtatgtgagtacactgtcttcagacacaccagaagaga
gcatctaactccattacagatgtttgctgggaattgatctcaagaccttt
ggaagagcagtcagtgctcttaactgctgagccatctctccaggcccctc
actcaccttttaaatcctttctgaggaatagccctaagactcgctctcta
atctgcttagtcttgacaccatagatgataggattgaccataggtgggaa
aagaagatagaaattagcaaggagtatgtggacatgaggagcagcccgac
gagccacacgatgcatgactgaggagatgactacaggtgtatagaaggct
aagatggcacctatatgcgacacacatgtcccaaaggccttgtagcgagc
ctcctgggaggcaagctggagaacagcacgaaggatgaagatgtaagaca
agataacgaagagcaggtccagcaccacaataaacatggccacagcaatg
ccatagatgttattgaagcgtgtgtccccacatgccagcctcaccacagc
catgtgttcacagtagcagtgggcaatcactgtgcctcgacagtaatgga
aacgtctgagcagaaaaggaagtggagtcattagtgtcacagcccgagtc
acagcagccaggccaatcttgatgatgaggggcttggtcaggatggtggt
atagtgcagaggtttgcatatggcacataacgatcgaatgccatggccac
acattgctgacttcatgatagcaaaggaatggagaaagaacatctggata
ggcaggcatgaaattgatttcccgatccttgaacagaacagagagcattt
gggcaggttgacaagaaaggactaatctattgctgcaatgtcagaaggag
gtactggccatggaagtgctcacgaatgatgaaaggagagtgcattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_109590303_109590894
seq2: B6Ng01-145A15.b_47_639

seq1  GAATTCCGTCCGTCGCGTTGCTCTGCACGTCACGGGTGGCGGGAGCGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTCCGTCGCGTTGCTCTGCACGTCACGGGTGGCGGGAGCGGGA  50

seq1  AGGAGTTCGTAATTCGGTTAGTCTGCTCTGGTGAGGAAAGTGCTGTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTCGTAATTCGGTTAGTCTGCTCTGGTGAGGAAAGTGCTGTCTAT  100

seq1  CGCGCAGCTTCCATCCCTCCGTCCGAGCAGCCTCTCGGAGTCCAACCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCAGCTTCCATCCCTCCGTCCGAGCAGCCTCTCGGAGTCCAACCCTT  150

seq1  CACATCTGACAGTCGTCTCTGTCCCTTCTTCGCCTCGGAGCTGCTAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGACAGTCGTCTCTGTCCCTTCTTCGCCTCGGAGCTGCTAACTG  200

seq1  GTCTCGAACCTCTCAGCACTTCAGCTTCTAGCGGCGATGCATGTGATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGAACCTCTCAGCACTTCAGCTTCTAGCGGCGATGCATGTGATCAA  250

seq1  GCGAGGTGAGGGGTCCGTGGGGATGGGGAGGAGGAGAGGGGACCCGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGTGAGGGGTCCGTGGGGATGGGGAGGAGGAGAGGGGACCCGGCTG  300

seq1  CGGAGAGCCCAGCGGTCACTATCGCCGGCCCGCCCGACCCGCCCGACCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGAGCCCAGCGGTCACTATCGCCGGCCCGCCCGACCCGCCCGACCCG  350

seq1  CGGCGCCTCGCCGCTTCCCGCGCTTCCCGCCGCGCTTCCCGCCCTGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGCCTCGCCGCTTCCCGCGCTTCCCGCCGCGCTTCCCGCCCTGTCTG  400

seq1  TCAGCTGGGCCTGTGTCTGCTCAGTCTGTCCCCATTCTCTTGACCTTTGT  450
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGGCCTGGGTCTGCTCAGTCTGTCCCCATTCTCTTGACCTTTGT  450

seq1  GTGTTCCCTTTGACTTTGACTTTGTGCTCCCTTCCAGACTCCCTCCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCCTTTGACTTTGACTTTGTGCTCCCTTCCAGACTCCCTCCAACC  500

seq1  CTGTCTGAGATTGTTCCCGAGCACTGTTATTCCTTGCCGCCATCCTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGAGATTGTTCCCGAGCACTGTTATTCCTTGCCGCCATCCTCAGA  550

seq1  GGTAGCTGC-TTTTGGCTCCATTTTTTTAGAAGAGGTTGCAAA  592
      ||||||||| ||||||||||||||||||||||||||||||| |
seq2  GGTAGCTGCTTTTTGGCTCCATTTTTTTAGAAGAGGTTGCATA  593

seq1: chr7_109752997_109754171
seq2: B6Ng01-145A15.g_66_1213 (reverse)

seq1  GCAACTGCACCCTCCTTTTCATCATTCGGGTTGATGCAGCTCTCCATGAG  50
      |||| ||||| |||| ||||||||||||   ||| ||| || |||||| |
seq2  GCAA-TGCACTCTCC-TTTCATCATTCG---TGA-GCA-CT-TCCATG-G  41

seq1  CCCATGTACCTCTTTCTGGCCATGTTGGCAGCAATAGATCTGGTCCTTTC  100
      ||   ||||||| ||||| |     | |||||||||||| | ||||||| 
seq2  CC--AGTACCTCCTTCTGAC----ATTGCAGCAATAGAT-TAGTCCTTT-  83

seq1  CTCGTCAACACTGCCCAAAATGCTCTCCCTGTTCTGGTTCAGGGATCGGG  150
      || |||||| |||||| |||||||||  ||||||| ||||| ||||||||
seq2  CTTGTCAAC-CTGCCC-AAATGCTCT--CTGTTCT-GTTCAAGGATCGGG  128

seq1  AAATCAATTTCCATGCCTGCCTTATCCAGATGTTCTTTCTCCATTCCTTT  200
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  AAATCAATTT-CATGCCTGCC-TATCCAGATGTTCTTTCTCCATTCCTTT  176

seq1  GCTATCATGGAGTCAGCAATGTTGTTGGCCATGGCCTTCGATCGTTATGT  250
      ||||||||| ||||||||||||   |||||||||| ||||||||||||| 
seq2  GCTATCATGAAGTCAGCAATGT--GTGGCCATGGCATTCGATCGTTATG-  223

seq1  TGCCATATGCAAACCTCTGCACTATACCACCATCCTGACCAAGCCCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATATGCAAACCTCTGCACTATACCACCATCCTGACCAAGCCCCTCA  273

seq1  TCATCAAGATTGGCCTGGCTGCTGTGACTCGGGCTGTGACACTAATGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGATTGGCCTGGCTGCTGTGACTCGGGCTGTGACACTAATGACT  323

seq1  CCACTTCCTTTTCTGCTCAGACGTTTCCATTACTGTCGAGGCACAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCTTTTCTGCTCAGACGTTTCCATTACTGTCGAGGCACAGTGAT  373

seq1  TGCCCACTGCTACTGTGAACACATGGCTGTGGTGAGGCTGGCATGTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACTGCTACTGTGAACACATGGCTGTGGTGAGGCTGGCATGTGGGG  423

seq1  ACACACGCTTCAATAACATCTATGGCATTGCTGTGGCCATGTTTATTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGCTTCAATAACATCTATGGCATTGCTGTGGCCATGTTTATTGTG  473

seq1  GTGCTGGACCTGCTCTTCGTTATCTTGTCTTACATCTTCATCCTTCGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGACCTGCTCTTCGTTATCTTGTCTTACATCTTCATCCTTCGTGC  523

seq1  TGTTCTCCAGCTTGCCTCCCAGGAGGCTCGCTACAAGGCCTTTGGGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCCAGCTTGCCTCCCAGGAGGCTCGCTACAAGGCCTTTGGGACAT  573

seq1  GTGTGTCGCATATAGGTGCCATCTTAGCCTTCTATACACCTGTAGTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCGCATATAGGTGCCATCTTAGCCTTCTATACACCTGTAGTCATC  623

seq1  TCCTCAGTCATGCATCGTGTGGCTCGTCGGGCTGCTCCTCATGTCCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGTCATGCATCGTGTGGCTCGTCGGGCTGCTCCTCATGTCCACAT  673

seq1  ACTCCTTGCTAATTTCTATCTTCTTTTCCCACCTATGGTCAATCCTATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGCTAATTTCTATCTTCTTTTCCCACCTATGGTCAATCCTATCA  723

seq1  TCTATGGTGTCAAGACTAAGCAGATTAGAGAGCGAGTCTTAGGGCTATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGTGTCAAGACTAAGCAGATTAGAGAGCGAGTCTTAGGGCTATTC  773

seq1  CTCAGAAAGGATTTAAAAGGTGAGTGAGGGGCCTGGAGAGATGGCTCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAGGATTTAAAAGGTGAGTGAGGGGCCTGGAGAGATGGCTCAGC  823

seq1  AGTTAAGAGCACTGACTGCTCTTCCAAAGGTCTTGAGATCAATTCCCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGAGCACTGACTGCTCTTCCAAAGGTCTTGAGATCAATTCCCAGC  873

seq1  AAACATCTGTAATGGAGTTAGATGCTCTCTTCTGGTGTGTCTGAAGACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTGTAATGGAGTTAGATGCTCTCTTCTGGTGTGTCTGAAGACAG  923

seq1  TGTACTCACATACATAACATAAATAAATAAATCTTAAAAAAACAAGGTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCACATACATAACATAAATAAATAAATCTTAAAAAAACAAGGTGA  973

seq1  GGGAGGGACAGTAGAAGAGAGCAGGCAGTTTGTTGGAATTGAAAATGGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGACAGTAGAAGAGAGCAGGCAGTTTGTTGGAATTGAAAATGGTG  1023

seq1  TGTTAGGAAGCAGAGGGCTGCCAAGATCTTCATGCTTACTTTTATCTTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGAAGCAGAGGGCTGCCAAGATCTTCATGCTTACTTTTATCTTGA  1073

seq1  TGTGATTTTTAAAAATAACTAGCCATTGACAAATGACACCCGCCTGGATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTTAAAAATAACTAGCCATTGACAAATGACACCCGCCTGGATT  1123

seq1  CAAACTTGTCGACATTTTGGAATTC  1175
      |||||||||||||||||||||||||
seq2  CAAACTTGTCGACATTTTGGAATTC  1148