BAC Information

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BAC

Clone NameB6Ng01-146J16
Chromosome7 (Build37)2 (Build37)
Map Location 37,782,273 - 37,782,89718,065,794 - 18,066,108
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043872, EG668988, LOC668507, Tshz3
Downstream geneLOC100043874, Zfp536, LOC100043453, EG627844, C80913
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146J16.bB6Ng01-146J16.g
ACCDH943704DH943705
length175341
definitionDH943704|Mus musculus domesticus DNA, BAC clone: B6Ng01-146J16, 5' end.DH943705|Mus musculus domesticus DNA, BAC clone: B6Ng01-146J16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,782,273 - 37,782,897)(18,065,794 - 18,066,108)
sequence
tccttcacaggggtctgaagcacgcctctgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtctgtgtgtg
tgtgtgtctgtctctctgtctctctttctctgtctctccctgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgt
tctctgcctctccgatgtcacacctcccctcctgccaaaaacctaatgta
caggtgatgcgtccatacatttcaccagaaaacaatctctccacagttgt
ttgttttttgagacaggttcttactatgtagctctgactggtctggaact
tacagtgtagaccagggctgcacttgtcttgcagtgatctcttgcctctg
cctcctgctgggattacagatcagcgccatcatgcccaccttcaattttg
ctgacagaaacaatgtcttccttttttctctttcctctctctctctctct
ctctctctctctctctctctctctctctcacacacacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_37782273_37782897
seq2: B6Ng01-146J16.b_64_224 (reverse)

seq1  ACACACACACACAGACACACACACACACACACACACACAGCAGTGCTTCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACATGGATACACACACACACACACAGCAGTGCTTCAGCATGGACACACAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACACACACAGACACACACACAGCAGTGCTTCAGCATGGACACACAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACACAGAGCAGTGCTTCAGCATGGACACACACACACACATAGCAGTGCTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  CACCATGAATACACACACACACACACACAGCAGTGCTTCAGCATGAATAC  250
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACACAGCAGTGCTTCATCATGGATACACACCCACACACACACACAC  300
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACATAGCAGTGCTTCAGCATAAATACACACACACACACACAGAGCA  350
                                                        
seq2  --------------------------------------------------  0

seq1  GTGCTTCAGCACGGATACATACACACACACACAGCAGTGCTTCAGCATGA  400
                                                        
seq2  --------------------------------------------------  0

seq1  ATACACACACACACACACACATAGCAGTGCTTCAGCACGGATACATACAC  450
        ||||||||||||||||||                      ||| ||||
seq2  --ACACACACACACACACAC----------------------ACACACAC  26

seq1  ACACACACAGCAGTGCTTCAGCATGGATACACACACACACACACACACAT  500
      ||||||||||              ||| | ||| | | | | | ||| | 
seq2  ACACACACAG--------------GGAGAGACAGAGAAAGAGAGACAGAG  62

seq1  AGCAGTGCTTCAGCATGGATACACACACATACACACACACACACACAGAG  550
      ||            |  || ||||||||| ||| ||||||||||||||| 
seq2  AG------------ACAGACACACACACACACAGACACACACACACAGA-  99

seq1  CAGTGCTTCAGCATGGATACACACACACACACACACACACACACACACAC  600
                 ||   | | ||||||||||||||||||||||||||||||
seq2  -----------CA--CACAGACACACACACACACACACACACACACACAC  136

seq1  ACACACACACAGAGCAGTGCTTCAG  625
      ||||||||||||||  |||||||||
seq2  ACACACACACAGAGGCGTGCTTCAG  161

seq1: chr2_18065794_18066108
seq2: B6Ng01-146J16.g_215_413

seq1  CTGGAACTCACTCTGTAGACCA-GGCTGGCCTCGAACT-CAGAAATCCGT  48
      |||||||| ||  ||||||||| |||||  || |   | |||  |||  |
seq2  CTGGAACTTACAGTGTAGACCAGGGCTGCACTTGTCTTGCAGTGATCTCT  50

seq1  CTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCCCTCATGCCC  98
       |||||||||||||    ||||||||||| || |  | ||| ||||||||
seq2  -TGCCTCTGCCTCC----TGCTGGGATTACAGATCAGCGCCATCATGCCC  95

seq1  AGCTCCAGAATACATTTCTTGATGTGTTTCACAGTGCCCCAGTTCCAATT  148
      | || ||      |||  ||| ||      ||||            ||  
seq2  ACCTTCA------ATT--TTGCTG------ACAG------------AA--  117

seq1  TACTTCTTGATTTGCTTTGTATTACCTGGTGTATCTTTCTTCACAATACC  198
                                                |||||  |
seq2  ------------------------------------------ACAATGTC  125

seq1  TTCTCTTTTCCTCCCCTTTCCTCCTGCTCCTTCCTGCTCCTGCTCCTCCT  248
      |||  |||| ||   ||||||||                           
seq2  TTCCTTTTTTCT---CTTTCCTC---------------------------  145

seq1  TGTCTGTCTCTGTCTCGTCTCTGTCTCTCTCTCTGACTCTGTCTCTCTCT  298
                  |||| ||||| |||||||||||  |||| |||||||||
seq2  ------------TCTC-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  182

seq1  CTCTCACACACACACAC  315
      |||||||||||||||||
seq2  CTCTCACACACACACAC  199