BAC Information

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BAC

Clone NameB6Ng01-147M17
Chromosome7 (Build37)
Map Location 5,696,774 - 5,842,105
singlet/doubletdoublet
Overlap geneLOC100041637, V1rd1, LOC100041647, V1rd11
Upstream geneSuv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627
Downstream geneLOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147M17.bB6Ng01-147M17.g
ACCDH944574DH944575
length946320
definitionDH944574|Mus musculus domesticus DNA, BAC clone: B6Ng01-147M17, 5' end.DH944575|Mus musculus domesticus DNA, BAC clone: B6Ng01-147M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,696,774 - 5,697,446)(5,841,786 - 5,842,105)
sequence
gaattccatggatagagtactataaaccataaaatgaagtaaagcatttg
cttctcaaatgaattttaatcatggtctttgtaacagcagtataatctga
aaataatacacatatgtttctctgtatctgagagaacaaacctattccat
attgggactgaattgcattttaaaagaaaacagagtcacagtgaagatag
gagaggttatgaaccaaatggatttaacagaaatctacagaatatttcac
cctaaaacaaaagaatacaccttcttctcagcaccacatggtcccttctc
caaaactgaccatataattggtcacaaaacctcaaccaatacaagaagat
tgaaataataccaggcatcctatcagatcaccatggcctaaggaagatct
tcaataccagcaaatactacagaaattccacatacacatggaaacttaac
aactcttttactcaatgacaatgtggtcagagaagaaataaaaaatgaaa
agaaaaacatcctggaatttaataaatatgttgccatatcataaacaaag
ttatggtacacaatgaaaacaatactaagaggaaagtttatagcactaat
ttccctgttaaagaaacaggagagatcttacatgaacaacttaacagcac
acatgagagctctagaacaaaattaaccatctcacccaagaaacatagaa
ggcaagaaatagtcaaactcagggccaaatcaaccaaataggaacaacaa
caaaaacaatacaaagaatcagtgaaaccaaaagctgcctctttgaatga
atcaacaaaatagataaaccgctagacaaactaactaaaaggccaggaag
ctgtatctaaattaataaaatcagaaatgaaaagcgagatataacacaga
aatggaggagatttttaaaaaatcattgatgccaatataaaagcct
caggaccaggaagcaggagtgggtgggttgggctgggtgagggtataggg
gactttcaatataacatttgaaatgtaaatgaagaaaatatctaataaaa
aatgaaaataaaagatgaacattgcttattttccttagtttgtagacatt
agctttgaatcttgagttatatgtgtttaatttgggatacttctataaaa
gtaagagacataggattaagagtcttctgatagaacacaatcatttaagg
attaaaggaaataatggaaagtgatgaattaaattaggttgaggggatga
aggaaggaatatggggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5696774_5697446
seq2: B6Ng01-147M17.b_46_718

seq1  GAATTCCATGGATAGAGTACTATAAACTATAAAATGAAGTAAAGCATTTG  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCCATGGATAGAGTACTATAAACCATAAAATGAAGTAAAGCATTTG  50

seq1  CTTCTCAAATGAATTTTAATCATGGTCTTTGTAACAGCAGTATAATCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAATGAATTTTAATCATGGTCTTTGTAACAGCAGTATAATCTGA  100

seq1  AAATAATACACATATGTTTCTCTGTATCTGAGAGAACAAACCTATTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATACACATATGTTTCTCTGTATCTGAGAGAACAAACCTATTCCAT  150

seq1  ATTGGGACTGAATTGCATTTTAAAAGAAAACAGAGTCACAGTGAAGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGACTGAATTGCATTTTAAAAGAAAACAGAGTCACAGTGAAGATAG  200

seq1  GAGAGGTTATGAACCAAATGGATTTAACAGAAATCTACAGAATATTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTTATGAACCAAATGGATTTAACAGAAATCTACAGAATATTTCAC  250

seq1  CCTAAAACAAAAGAATACACCTTCTTCTCAGCACCACATGGTCCCTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACAAAAGAATACACCTTCTTCTCAGCACCACATGGTCCCTTCTC  300

seq1  CAAAACTGACCATATAATTGGTCACAAAACCTCAACCAATACAAGAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTGACCATATAATTGGTCACAAAACCTCAACCAATACAAGAAGAT  350

seq1  TGAAATAATACCAGGCATCCTATCAGATCACCATGGCCTAAGGAAGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAATACCAGGCATCCTATCAGATCACCATGGCCTAAGGAAGATCT  400

seq1  TCAATACCAGCAAATACTACAGAAATTCCACATACACATGGAAACTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACCAGCAAATACTACAGAAATTCCACATACACATGGAAACTTAAC  450

seq1  AACTCTTTTACTCAATGACAATGTGGTCAGAGAAGAAATAAAAAATGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTTACTCAATGACAATGTGGTCAGAGAAGAAATAAAAAATGAAA  500

seq1  AGAAAAACATCCTGGAATTTAATAAATATGTTGCCATATCATAAACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACATCCTGGAATTTAATAAATATGTTGCCATATCATAAACAAAG  550

seq1  TTATGGTACACAATGAAAACAATACTAAGAGGAAAGTTTATAGCACTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTACACAATGAAAACAATACTAAGAGGAAAGTTTATAGCACTAAT  600

seq1  TTCCCTGTTAAAGAAACAGGAGAGATCTTACATGAACAACTTAACAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTTAAAGAAACAGGAGAGATCTTACATGAACAACTTAACAGCAC  650

seq1  ACATGAGAGCTCTAGAACAAAAT  673
      |||||||||||||||||||||||
seq2  ACATGAGAGCTCTAGAACAAAAT  673

seq1: chr7_5841786_5842105
seq2: B6Ng01-147M17.g_77_396 (reverse)

seq1  CTCTCCCCATATTCCTTCCTTCATCCCCTCAACCTAATTTAATTCATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCATATTCCTTCCTTCATCCCCTCAACCTAATTTAATTCATCAC  50

seq1  TTTCCATTATTTCCTTTAATCCTTAAATGATTGTGTTCTATCAGAAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTATTTCCTTTAATCCTTAAATGATTGTGTTCTATCAGAAGACT  100

seq1  CTTAATCCTATGTCTCTTACTTTTATAGAAGTATCCCAAATTAAACACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCCTATGTCTCTTACTTTTATAGAAGTATCCCAAATTAAACACAT  150

seq1  ATAACTCAAGATTCAAAGCTAATGTCTACAAACTAAGGAAAATAAGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCAAGATTCAAAGCTAATGTCTACAAACTAAGGAAAATAAGCAAT  200

seq1  GTTCATCTTTTATTTTCATTTTTTATTAGATATTTTCTTCATTTACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCTTTTATTTTCATTTTTTATTAGATATTTTCTTCATTTACATTT  250

seq1  CAAATGTTATATTGAAAGTCCCCTATACCCTCACCCAGCCCAACCCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTATATTGAAAGTCCCCTATACCCTCACCCAGCCCAACCCACCC  300

seq1  ACTCCTGCTTCCTGGTCCTG  320
      ||||||||||||||||||||
seq2  ACTCCTGCTTCCTGGTCCTG  320