BAC Information

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BAC

Clone NameB6Ng01-148P24
Chromosome7 (Build37)2 (Build37)
Map Location 20,819,535 - 20,820,663142,776,435 - 142,776,996
singlet/doubletsingletsinglet
Overlap geneLOC100043523
Upstream geneOpa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574
Downstream geneEG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135, LOC100042996, EG667273, EG667268, EG667262, EG667259, LOC100043574, LOC100043576, Gm1447, LOC100043006
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148P24.bB6Ng01-148P24.g
ACCDH945457DH945458
length1,122803
definitionDH945457|Mus musculus domesticus DNA, BAC clone: B6Ng01-148P24, 5' end.DH945458|Mus musculus domesticus DNA, BAC clone: B6Ng01-148P24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,819,535 - 20,820,663)(142,776,435 - 142,776,996)
sequence
gaattcaatacaattaggagggaggggaggcttcaattgggatataacta
aatcattaaaaataaaacaatatataaatgcagcataaaaactattaatt
gaatttccttatgttatagcaacatattaaaaattatgtgtatcagaata
acatgtaagattgcaaataataaaattgtgtaattgaattcaggtgtaga
aaattaagttgttggcttttgaaaaaattttatactactcatccacacga
acacacacacaaacacaaaaacacaccacatatttctaataaagccagct
gtcttctgatcacactgatgaacatatacagacatatgtgtcctccatgt
aaaaaaaaatccaacttgctaagacgtttcatctattcatatttttcctg
atcttaatttttgttctaaaatgtcaggtgccagagccttagctgtgtca
cctgcagcttccctccaaagttactaacacaatcactgttacaccctttg
caagctgatgcttagtctgcattttacttgtttatatgttttctgtagga
acatgagggcctccatccaccagataaaattcaacatctcacatacatgt
tacactgaatgctgttttctcctgagtactaatctaggacagagacatgt
ctttgagacaaaagcaaaatattaagctatataaggttacctgcagactt
cagaaagaaataatgtttcctggtgaattcagaagacaattttcactgaa
gaaaatagaagagaattttaagcagaagtctatggttggaagaatcccgc
cttctgagcctcagtcaggatgaagatgctcatctgaaaaccagctgcag
agcacagctcctatagaagtatatttcctagtgcctggattgaggaaatt
ctctgtgtcactctttgcctgagaaagaatgcaatgaaatttagatggtt
tcttattctccatgcaatgctgtgaaggtacccacaaagtccaagtttcc
agtctcataaataacaggcagcgggacatgacattctcagagagttatta
tgttcatctgtggcatccgcacggtttgtctgcatggtgtcttgggaaaa
cctcccattgaaggaaatatca
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaacttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgattcgca
gtcttcctcatctaacaaccagttgtgccagcaccaattgttgaaaatgc
tgtctttcttccactggatggttttagctcccttgtcgaagatcaagtga
ccataggtgtatgggttcatttctgggtcttcaattctattccattggtc
tacttgtctgtctctataccagtaccatgcagtttttaccacaattgctc
tgtagtaaagctttaggtcaggcatggtgattccaccagaggttctttta
tatttgagaagagtttttgctatcctaggttttttgttattccggatgaa
tttgcaaattgcttccttctaattcgttgaagaattgagtttggaatttt
gatggggattgcattgaatctgtagattgcttttggcagatagccatttt
tac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20819535_20820663
seq2: B6Ng01-148P24.b_51_1172

seq1  GAATTCAATACAATTAGGAGGGAGGGGAGGCTTCAATTGGGATATAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACAATTAGGAGGGAGGGGAGGCTTCAATTGGGATATAACTA  50

seq1  AATCATTAAAAATAAAACAATATATAAATGCAGCATAAAAACTATTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTAAAAATAAAACAATATATAAATGCAGCATAAAAACTATTAATT  100

seq1  GAATTTCCTTATGTTATAGCAACATATTAAAAATTATGTGTATCAGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCTTATGTTATAGCAACATATTAAAAATTATGTGTATCAGAATA  150

seq1  ACATGTAAGATTGCAAATAATAAAATTGTGTAATTGAATTCAGGTGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAGATTGCAAATAATAAAATTGTGTAATTGAATTCAGGTGTAGA  200

seq1  AAATTAAGTTGTTGGCTTTTGAAAAAATTTTATACTACTCATCCACACGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGTTGTTGGCTTTTGAAAAAATTTTATACTACTCATCCACACGA  250

seq1  ACACACACACAAACACAAAAACACACCACATATTTCTAATAAAGCCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAAACACAAAAACACACCACATATTTCTAATAAAGCCAGCT  300

seq1  GTCTTCTGATCACACTGATGAACATATACAGACATATGTGTCCTCCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGATCACACTGATGAACATATACAGACATATGTGTCCTCCATGT  350

seq1  AAAAAAAAATCCAACTTGCTAAGACGTTTCATCTATTCATATTTTTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATCCAACTTGCTAAGACGTTTCATCTATTCATATTTTTCCTG  400

seq1  ATCTTAATTTTTGTTCTAAAATGTCAGGTGCCAGAGCCTTAGCTGTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATTTTTGTTCTAAAATGTCAGGTGCCAGAGCCTTAGCTGTGTCA  450

seq1  CCTGCAGCTTCCCTCCAAAGTTACTAACACAATCACTGTTACACCCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCTTCCCTCCAAAGTTACTAACACAATCACTGTTACACCCTTTG  500

seq1  CAAGCTGATGCTTAGTCTGCATTTTACTTGTTTATATGTTTTCTGTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGATGCTTAGTCTGCATTTTACTTGTTTATATGTTTTCTGTAGGA  550

seq1  ACATGAGGGCCTCCATCCACCAGATAAAATTCAACATCTCACATACATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGGCCTCCATCCACCAGATAAAATTCAACATCTCACATACATGT  600

seq1  TACACTGAATGCTGTTTTCTCCTGAGTACTAATCTAGGACAGAGACATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGAATGCTGTTTTCTCCTGAGTACTAATCTAGGACAGAGACATGT  650

seq1  CTTTGAGACAAAAGCAAAATATTAAGCTATATAAGGTTACCTGCAGACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGACAAAAGCAAAATATTAAGCTATATAAGGTTACCTGCAGACTT  700

seq1  CAGAAAGAAATAATGTTTCCTGGTGAATTCAGAAGACAATTTTCACTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAATAATGTTTCCTGGTGAATTCAGAAGACAATTTTCACTGAA  750

seq1  GAAAATAGAAGAGAATTTTAAGCAGAAGTCTATGGTTGGAAGAATCCCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGAAGAGAATTTTAAGCAGAAGTCTATGGTTGGAAGAATCCCGC  800

seq1  CTTCTGAGCCTCAGTCAGGATGAAGATGCTCATCTGAAAACCAGCTGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGCCTCAGTCAGGATGAAGATGCTCATCTGAAAACCAGCTGCAG  850

seq1  AGCACAGCTCCTATAGAAGTATATTTCCTAGTGCCTGGATTGAGGAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCTCCTATAGAAGTATATTTCCTAGTGCCTGGATTGAGGAAATT  900

seq1  CTCTGTGTCACTCTTTGCCTGAGAAAGAATGCAATGAAATTTAGAATGGT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCTGTGTCACTCTTTGCCTGAGAAAGAATGCAATGAAATTTAG-ATGGT  949

seq1  TTCTTATTCTCCATGCAATGCTGTGAAGGTAACCCAACAAAGTCCAAGTT  1000
      |||||||||||||||||||||||||||||||  || ||||||||||||||
seq2  TTCTTATTCTCCATGCAATGCTGTGAAGGTA--CCCACAAAGTCCAAGTT  997

seq1  TCCAGTCTCATAAAATAACAGGGCAGCGGGACATGACATCCTTCAGAGAG  1050
      ||||||||||| |||||||| |||||||||||||||||| | ||||||||
seq2  TCCAGTCTCAT-AAATAACA-GGCAGCGGGACATGACATTC-TCAGAGAG  1044

seq1  TTTATTATTGTATCATCTGTGGCATCCGCAC-GTTTGTCTGCATGGTGTC  1099
       |||||| ||| ||||||||||||||||||| ||||||||||||||||||
seq2  -TTATTA-TGT-TCATCTGTGGCATCCGCACGGTTTGTCTGCATGGTGTC  1091

seq1  TTTGGGATACCT-CCAATGAAGGAAAAATCA  1129
      || || | |||| ||| ||||||||| ||||
seq2  TTGGGAAAACCTCCCATTGAAGGAAATATCA  1122

seq1: chr2_142776435_142776996
seq2: B6Ng01-148P24.g_309_869 (reverse)

seq1  GTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCC  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTAAAAATGGCTATC-TGCCAAAAGCAATCTACAGATTCAATGCAATCCC  49

seq1  CATCAAAATTCC-AACTCAATTCTTCAACGAATTAGAAGG-AGCAATTTG  98
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  CATCAAAATTCCAAACTCAATTCTTCAACGAATTAGAAGGAAGCAATTTG  99

seq1  CAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCA  148
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  CAAATTCATCCGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCA  149

seq1  AGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTAC  198
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTAC  199

seq1  TACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACA  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TACAGAGCAATTGTGGTAAAAACTGCATGGTACTGGTATAGAGACAGACA  249

seq1  AGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCT  298
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCATACACCT  299

seq1  ATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAA  348
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAA  349

seq1  GACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAG  398
      ||||||||||||||||||||||||||||||||||||||||||  |||  |
seq2  GACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTA-GATGAGG  398

seq1  AAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTA  448
      |||| || ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTA  448

seq1  AGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAG  498

seq1  GAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCT  548
      |||||||||||||||||  |||||||||||||||||||||| ||||||||
seq2  GAGAAAGTGGGGAAAAG-TTTGAAGATATGGGCACAGGGGAAAAATTCCT  547

seq1  GAACAGAACAGCAA  562
      ||||||||||||||
seq2  GAACAGAACAGCAA  561