BAC Information

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BAC

Clone NameB6Ng01-149A16
Chromosome7 (Build37)
Map Location 9,647,535 - 9,648,564
singlet/doubletsinglet
Overlap geneLOC100042810
Upstream geneLOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598
Downstream geneLOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149A16.bB6Ng01-149A16.g
ACCDH945487DH945488
length6411,026
definitionDH945487|Mus musculus domesticus DNA, BAC clone: B6Ng01-149A16, 5' end.DH945488|Mus musculus domesticus DNA, BAC clone: B6Ng01-149A16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgtagtcaatatcccaagcttttgaccatcaggctaaactcct
ccccaattacctagcaacagaaatgatagcatattttaaaggggttgatt
ggccactccctgccctctgtgtctctctctctctcacactcctttgttct
cttgctcttactctcctctcactctctccttcttactcttgcttttttcc
tagccccacctttctctctcctacattgtttctttcccccggcctttcta
cagtaaagctctaaaagcatagacagtctctgatcatcaaggctgtgctc
actcttgccagtgtgggaacctgtcttctctcttccctctctcccataac
cccgggtctacagggtgttgccccgggaccccaggttgggctgccccttg
tccatcccctgttgagtgagtcagagacttggatgcccacccagagcgga
atggaaagtgtctggcagccctcccatgtctgcctgtccagggcataagt
ggaattctcgcgggacatgggtcctcactccccattcttttcccagtccc
ccttttagttcctataaggtggtgtgggggatggggttcaacatgaagtc
aggttgcgttggggagaaggtgtgggatgtggagtattcag
gaattccttggacaaagtgatgttatatatcaatgggaattctacacaaa
caccctgaaatagactgtccttttcaaagccagccaaaacactaaaatct
ggtagtcaaacactgttggtatcttcttttatcaatgattaaccataaca
tagttaccaaatacaagagacagtaggaaaattttgtgactcacaaaagc
cctgttcccctacttggaaattaatcttatataaactgaatgtacacagg
acttgggagcaaaagtgtgaaaatacaatcacattgatatttgagcccaa
atgagaccaactcattgattccacttgactattccatctattgtagacag
gatttcttgaggtttgtgggatgagaccgattctcagatttgcttgcaaa
ctaatcagagttaatacacctccacaacttttgataatcctggcttcctc
attcttttttctactttggatttttgtcaactctttattatttactctga
aaactgttatttttagagctgtgctacttataaaatatataggaagcact
acatgacaataaatgagttttagatacccatcatatgtatctatgtggca
cactgcatgaaaatataaggatcatttatcacagtatactttcatatttt
atatgaagaaacagtaagtaaataacaagttaatataataatacacacac
acacacacacacacacaaatttattattttttacctttgtgcctttgaat
agggcctgatatgtagcagggcatttatgggaaaaatttgcaatcatatt
cctaaagttcaactggtataaaagaggctaaagccaaaaaaaaactcaaa
aacaaaaattcaaaacaaaacaaaacaaaacaaaaaactagttttattat
caggctgtcatgggaacacattctgtagaccatgatggcctcaaatcaga
aatctgcctgcctctgcctccaagtgctagattaaagtgttgtgccacca
ctgcccagtgcctttgctttcataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9647535_9648564
seq2: B6Ng01-149A16.g_67_1092

seq1  GAATTCCTTGGACAAAGTGATGTTATATATCAATGGGAATTCTACACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGACAAAGTGATGTTATATATCAATGGGAATTCTACACAAA  50

seq1  CACCCTGAAATAGACTGTCCTTTTCAAAGCCAGCCAAAACACTAAAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGAAATAGACTGTCCTTTTCAAAGCCAGCCAAAACACTAAAATCT  100

seq1  GGTAGTCAAACACTGTTGGTATCTTCTTTTATCAATGATTAACCATAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCAAACACTGTTGGTATCTTCTTTTATCAATGATTAACCATAACA  150

seq1  TAGTTACCAAATACAAGAGACAGTAGGAAAATTTTGTGACTCACAAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACCAAATACAAGAGACAGTAGGAAAATTTTGTGACTCACAAAAGC  200

seq1  CCTGTTCCCCTACTTGGAAATTAATCTTATATAAACTGAATGTACACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCCCCTACTTGGAAATTAATCTTATATAAACTGAATGTACACAGG  250

seq1  ACTTGGGAGCAAAAGTGTGAAAATACAATCACATTGATATTTGAGCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGCAAAAGTGTGAAAATACAATCACATTGATATTTGAGCCCAA  300

seq1  ATGAGACCAACTCATTGATTCCACTTGACTATTCCATCTATTGTAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACCAACTCATTGATTCCACTTGACTATTCCATCTATTGTAGACAG  350

seq1  GATTTCTTGAGGTTTGTGGGATGAGACCGATTCTCAGATTTGCTTGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTGAGGTTTGTGGGATGAGACCGATTCTCAGATTTGCTTGCAAA  400

seq1  CTAATCAGAGTTAATACACCTCCACAACTTTTGATAATCCTGGCTTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCAGAGTTAATACACCTCCACAACTTTTGATAATCCTGGCTTCCTC  450

seq1  ATTCTTTTTTCTACTTTGGATTTTTGTCAACTCTTTATTATTTACTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTTCTACTTTGGATTTTTGTCAACTCTTTATTATTTACTCTGA  500

seq1  AAACTGTTATTTTTAGAGCTGTGCTACTTATAAAATATATAGGAAGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTATTTTTAGAGCTGTGCTACTTATAAAATATATAGGAAGCACT  550

seq1  ACATGACAATAAATGAGTTTTAGATACCCATCATATGTATCTATGTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACAATAAATGAGTTTTAGATACCCATCATATGTATCTATGTGGCA  600

seq1  CACTGCATGAAAATATAAGGATCATTTATCACAGTATACTTTCATATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCATGAAAATATAAGGATCATTTATCACAGTATACTTTCATATTTT  650

seq1  ATATGAAGAAACAGTAAGTAAATAACAAGTTAATATAATAATACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGAAACAGTAAGTAAATAACAAGTTAATATAATAATACACACAC  700

seq1  ACACACACACACACACAAATTTATTATTTTTTACCTTTGTGCC-TTGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACACACACACACACACAAATTTATTATTTTTTACCTTTGTGCCTTTGAAT  750

seq1  AGGGCCTGATATGTAGCAGGGCATTTATGGGAAAAATTTGCAATCATATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTGATATGTAGCAGGGCATTTATGGGAAAAATTTGCAATCATATT  800

seq1  CCTAAAGTTCAACTGGTATAAAAGAGGCTAAAGCCAAAAAAAAAACTCAA  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTAAAGTTCAACTGGTATAAAAGAGGCTAAAGCC-AAAAAAAAACTCAA  849

seq1  AAACAAAAAATTCAAAACAAAACAAAACAAAACAAAAAACTAGTTTTATT  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAC-AAAAATTCAAAACAAAACAAAACAAAACAAAAAACTAGTTTTATT  898

seq1  ATCAGGCTGTCAT-GGAACACATTCTGTAGACCATGATGGCCTCAAAATC  948
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  ATCAGGCTGTCATGGGAACACATTCTGTAGACCATGATGGCCTC-AAATC  947

seq1  AGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTAGGATTAAAGGTGTGTGC  998
      |||||||||||||||||||||| |||||||||| ||||||||   |||||
seq2  AGAAATCTGCCTGCCTCTGCCT-CCAAGTGCTA-GATTAAAGTGTTGTGC  995

seq1  CACCACTGCCCAAGTGCCTTTGGCTTCATAAA  1030
      ||||||||||| ||||||||||  ||||||||
seq2  CACCACTGCCC-AGTGCCTTTGCTTTCATAAA  1026