BAC Information

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BAC

Clone NameB6Ng01-149D08
Chromosome7 (Build37)
Map Location 53,937,804 - 54,035,260
singlet/doubletdoublet
Overlap geneSaal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5
Upstream geneGm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1
Downstream geneGtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314, Mrgprc3-ps, EG435977, EG619792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149D08.bB6Ng01-149D08.g
ACCDH945611DH945612
length1,139486
definitionDH945611|Mus musculus domesticus DNA, BAC clone: B6Ng01-149D08, 5' end.DH945612|Mus musculus domesticus DNA, BAC clone: B6Ng01-149D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,937,804 - 53,938,935)(54,034,769 - 54,035,260)
sequence
gaattcttcaaatgtggaggtgtctaaaagcagcttcatgatctagtgac
tgacatcatagaattagtgaatacagattcaccctctggctacatatgca
tgccccgcctacctatgctctgagcacccaagtacccactgcactctcct
tccagctgaaaacctgtgtgtgaggaagtcaaacgcctccaaaacacaca
gcctctctgccctttcttccctgccccatagtctgtgtgcaactgggcct
gagcaggaagacgccacttctgttgcatagactgtttccaaaaccccaat
ttctcctgtaatcatgagtgtcgggtgctaaggggaaagccataaaagtc
attataaacagatcccgtgatgtcaaaggaaaaacagttggagtagacag
tttaataagcagccttcttttattacaataggcttgacgtcacctgttat
ttattgtttccatcactagaacacaaagccttgtgggacagaatgaaaag
gacatatgagctttactaagcattttaatatcctcttattgacagtagat
agaagatctgaacaagggctgggagcaggaaatgattttagtgatttcat
tatggatggaggaaaagccgccacaatggcagcgttgggcagatggtctt
ccacttccaaagagcccataggtcaacaggtccagtattgatacaaggct
ggtaagtaattaatgggtgcctagcaagcagaggagttttcataaacaca
ttctgcatcctgagcagtggaacaggaagctggcatttaaaggttccttt
cagattgcagcagatgggtcaagaacacgctgagaacaaggctcacagaa
tcaactaagcggggctcataaggggctcacagagtctacagcgagaataa
tggatcctgtatgtgtcagagataagttctctacatatgttttgattgag
tggcctagtgttcttgtggactcctgacagtgaaactggggtggtctctg
actcttgcctgcacttgggacccttttccaccttgagttgcctcatcagc
ttgattatgagggtctgtgctagtttttattggaacttgttatgatgtgt
tcagttatattccctgggatgcctgctcttttttgaggg
agtaaagcggagtggtcaggattccaggaaacagggagggagcttctggg
gataaaggagggagaaggctctgtgagtttggagggaagctccagcagtg
gagcggcactccgcagtctagtgtgaggcttctgccctcatgctgaaggc
cctggcttgttatttaccttctctgacaaagcatacctgcaccttgatgg
ggctcttaggtaatagggctgagccttcacagtcctcctggcatggctgc
ctagttgttctcagcctttgtcatctacacacactgagaatactgccttt
cctgatggggactcctgctgctctgtttaaatgagtgtctgtgtgttata
tctgagaagctgagagaagctgagtaagtgtcatgtaagtccctcttatg
ggtatttctttttccagataccagccttttcttcctctagaaactacgtg
agtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_53937804_53938935
seq2: B6Ng01-149D08.b_47_1179

seq1  GAATTCTTCAAATGTGGAGGTGTCTAAAAGCAGCTTCATGATCTAGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAATGTGGAGGTGTCTAAAAGCAGCTTCATGATCTAGTGAC  50

seq1  TGACATCATAGAATTAGTGAATACAGATTCACCCTCTGGCTACATATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCATAGAATTAGTGAATACAGATTCACCCTCTGGCTACATATGCA  100

seq1  TGCCCCGCCTACCTATGCTCTGAGCACCCAAGTACCCACTGCACTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCGCCTACCTATGCTCTGAGCACCCAAGTACCCACTGCACTCTCCT  150

seq1  TCCAGCTGAAAACCTGTGTGTGAGGAAGTCAAACGCCTCCAAAACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGAAAACCTGTGTGTGAGGAAGTCAAACGCCTCCAAAACACACA  200

seq1  GCCTCTCTGCCCTTTCTTCCCTGCCCCATAGTCTGTGTGCAACTGGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTGCCCTTTCTTCCCTGCCCCATAGTCTGTGTGCAACTGGGCCT  250

seq1  GAGCAGGAAGACGCCACTTCTGTTGCATAGACTGTTTCCAAAACCCCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAAGACGCCACTTCTGTTGCATAGACTGTTTCCAAAACCCCAAT  300

seq1  TTCTCCTGTAATCATGAGTGTCGGGTGCTAAGGGGAAAGCCATAAAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGTAATCATGAGTGTCGGGTGCTAAGGGGAAAGCCATAAAAGTC  350

seq1  ATTATAAACAGATCCCGTGATGTCAAAGGAAAAACAGTTGGAGTAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAACAGATCCCGTGATGTCAAAGGAAAAACAGTTGGAGTAGACAG  400

seq1  TTTAATAAGCAGCCTTCTTTTATTACAATAGGCTTGACGTCACCTGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAGCAGCCTTCTTTTATTACAATAGGCTTGACGTCACCTGTTAT  450

seq1  TTATTGTTTCCATCACTAGAACACAAAGCCTTGTGGGACAGAATGAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTTCCATCACTAGAACACAAAGCCTTGTGGGACAGAATGAAAAG  500

seq1  GACATATGAGCTTTACTAAGCATTTTAATATCCTCTTATTGACAGTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATGAGCTTTACTAAGCATTTTAATATCCTCTTATTGACAGTAGAT  550

seq1  AGAAGATCTGAACAAGGGCTGGGAGCAGGAAATGATTTTAGTGATTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCTGAACAAGGGCTGGGAGCAGGAAATGATTTTAGTGATTTCAT  600

seq1  TATGGATGGAGGAAAAGCCGCCACAATGGCAGCGTTGGGCAGATGGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGGAGGAAAAGCCGCCACAATGGCAGCGTTGGGCAGATGGTCTT  650

seq1  CCACTTCCAAAGAGCCCATAGGTCAACAGGTCCAGTATTGATACAAGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCAAAGAGCCCATAGGTCAACAGGTCCAGTATTGATACAAGGCT  700

seq1  GGTAAGTAATTAATGGGTGCCTAGCAAGCAGAGGAGTTTTCATAAACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTAATTAATGGGTGCCTAGCAAGCAGAGGAGTTTTCATAAACACA  750

seq1  TTCTGCATCCTGAGCAGTGGAACAGGAAGCTGGCATTTAAAGGTTCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATCCTGAGCAGTGGAACAGGAAGCTGGCATTTAAAGGTTCCTTT  800

seq1  CAGATTGCAGCAGATGGGTCAAGAACACGCTGAGAACAAGGCTCACAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGCAGCAGATGGGTCAAGAACACGCTGAGAACAAGGCTCACAGAA  850

seq1  TCAACTAAGCGGGGCTCAT-AGGGGCTCACAGAGTCTACAGCGAGAATAA  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCAACTAAGCGGGGCTCATAAGGGGCTCACAGAGTCTACAGCGAGAATAA  900

seq1  TGGATCCTGTATGTGTCAGAGATAGGTTCTCTACATATGTTATGATTGAG  949
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  TGGATCCTGTATGTGTCAGAGATAAGTTCTCTACATATGTTTTGATTGAG  950

seq1  TGGCTTAGTGTTCTTGTGGGACTCCTGACAGTGAAACTGGGGT-GTCTCT  998
      |||| |||||||||||| ||||||||||||||||||||||||| ||||||
seq2  TGGCCTAGTGTTCTTGT-GGACTCCTGACAGTGAAACTGGGGTGGTCTCT  999

seq1  GACTCTTGCCTGCACTTGGGACCCTTTTCCACC-TGAGTTGCCTCATCCA  1047
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  GACTCTTGCCTGCACTTGGGACCCTTTTCCACCTTGAGTTGCCTCAT-CA  1048

seq1  GCCTTGA-TATGAGGGTCTGTGCCTAG-TCTTATTGGAACTTGTTATGAT  1095
      | ||||| |||||||||||||| |||| | ||||||||||||||||||||
seq2  G-CTTGATTATGAGGGTCTGTG-CTAGTTTTTATTGGAACTTGTTATGAT  1096

seq1  GTGTTCAGTTTATA-TCCCTGGGAGGCCTGCTCTTTTT  1132
      |||||||| ||||| ||||||||| |||||||||||||
seq2  GTGTTCAG-TTATATTCCCTGGGATGCCTGCTCTTTTT  1133

seq1: chr7_54034769_54035260
seq2: B6Ng01-149D08.g_69_560 (reverse)

seq1  CACACACACACACACACACACACACACACACTCACTCACGTAGTTTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACTCACTCACGTAGTTTCTAG  50

seq1  AGGAAGAAAAGGCTGGTATCTGGAAAAAGAAATACCCATAAGAGGGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAAGGCTGGTATCTGGAAAAAGAAATACCCATAAGAGGGACTT  100

seq1  ACATGACACTTACTCAGCTTCTCTCAGCTTCTCAGATATAACACACAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACACTTACTCAGCTTCTCTCAGCTTCTCAGATATAACACACAGAC  150

seq1  ACTCATTTAAACAGAGCAGCAGGAGTCCCCATCAGGAAAGGCAGTATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTAAACAGAGCAGCAGGAGTCCCCATCAGGAAAGGCAGTATTCT  200

seq1  CAGTGTGTGTAGATGACAAAGGCTGAGAACAACTAGGCAGCCATGCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTGTAGATGACAAAGGCTGAGAACAACTAGGCAGCCATGCCAGG  250

seq1  AGGACTGTGAAGGCTCAGCCCTATTACCTAAGAGCCCCATCAAGGTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGTGAAGGCTCAGCCCTATTACCTAAGAGCCCCATCAAGGTGCAG  300

seq1  GTATGCTTTGTCAGAGAAGGTAAATAACAAGCCAGGGCCTTCAGCATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTTTGTCAGAGAAGGTAAATAACAAGCCAGGGCCTTCAGCATGAG  350

seq1  GGCAGAAGCCTCACACTAGACTGCGGAGTGCCGCTCCACTGCTGGAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGCCTCACACTAGACTGCGGAGTGCCGCTCCACTGCTGGAGCTT  400

seq1  CCCTCCAAACTCACAGAGCCTTCTCCCTCCTTTATCCCCAGAAGCTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAACTCACAGAGCCTTCTCCCTCCTTTATCCCCAGAAGCTCCCT  450

seq1  CCCTGTTTCCTGGAATCCTGACCACTCCGCTTTACTGAATTC  492
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTCCTGGAATCCTGACCACTCCGCTTTACTGAATTC  492