BAC Information

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BAC

Clone NameB6Ng01-153C11
Chromosome7 (Build37)
Map Location 85,441,455 - 85,597,427
singlet/doubletdoublet
Overlap geneNtrk3
Upstream geneA330068G13Rik
Downstream geneMrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153C11.bB6Ng01-153C11.g
ACCDH948544DH948545
length1,164566
definitionDH948544|Mus musculus domesticus DNA, BAC clone: B6Ng01-153C11, 5' end.DH948545|Mus musculus domesticus DNA, BAC clone: B6Ng01-153C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,441,455 - 85,442,628)(85,596,857 - 85,597,427)
sequence
gaattcagtggtttggaatcagaatattagggtccactctttctgactgt
gccatacaccccatctttatccacttcaaaccatcaaggttatactcatt
tacatcgaaaaggtgttgaaagactgtgatttgcatagggtcacgagtta
acactgtgattatgtaaagccaaggagtgtttctgatcatgtgtaataaa
tccctgtgtcttctagtatgcaggactggaagtcccacaagagctgtcat
caacggcttttcctgcagctgtggttgctttctgagagtctgtaatcctg
actttgaccttcacccaaaaggtctcaagtgcccactgggcctgggctgg
agggtccccacacaggcgtcatcagcatcctttatgacctgccaggatct
atgctccacagagctcacccttaacatcttacttctgtttgtccccatct
atggcttaaccctaagagttccctcctgattcccagacatcttcctacag
actggaacatgcagaaactttgaacaagactccaaacctttaaatccacc
tgcaaggagatgagagtgggcaaggaagactgagcccctgcaaacacact
caaagacattttatgttgtggggagccattctcctgatggaaagacttca
caaggcagaggggtcacagatcttttacaagccacgtagaaatatctttc
ctgaccaagttgtcctttaacaaaaaaatgaggctaggttactcttcagg
ggtttccatcattgtgtgcaaagaaacagggcccaaatcctgcccaagca
ggcttctgattcctgatgtaattttggaaccaccccctggctaccacatc
tccttcaagtcacttgtgagttcaagtagggttgaaggaggaatctgatt
tagctctgaaatacattgtcagatctaggctgagattctcttgggaagtg
ggaagtcgagggggcggtaccacaggatttctggaggcggacgcagaacc
agaactttctagggaaacccagactgctcagtaactttccccccatcaac
cagcatttaagagatggagtgactgtggtaggtagaacaggcgagggaag
aatgggggttcaaagcaaccctgagcgtgctagtgcactcaggtccagca
gtttcatagtagcc
ataacaaaaggccatttattgcaaggacgtgactgtagatagagatgatt
gatgcttggtgctatttcctggcccattgactggtatttaattccaattg
ccattgtgttctgaaaccagtcttagggtaatgtctagagggctattcat
taagatggtaagcctggaattcactagtgagagggaaatggaaggagggc
ccggaacggagaaggaaagacgtaccctagtcaaggggtaaggatgtcag
tgacagcagctgcccctgttaaaatcttcctaatcctcacactggccagg
attccaagccattcacaccactcctgctctgtatttttatgctgcagtgt
gctctctgggttggaggtaggaggagggtggggcagagtctgactttctt
tggggttcttttcatagttctgtagcatgcatgaggtagatagctacact
ggaactcattccttagtggtgtctgctcatctaggagggtgaatctagag
acctgcttcccaaggtctgggcaggtacttatttagggccagttgctaat
tgtcttcttttccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_85441455_85442628
seq2: B6Ng01-153C11.b_46_1209

seq1  GAATTCAGTGGTTTGGAATCAGAATATTCAGGGTCCACTCTTTCTGACTG  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCAGTGGTTTGGAATCAGAATATT-AGGGTCCACTCTTTCTGACTG  49

seq1  TGCCATACACCCCATCTTTATCCACTTCAAACCATCAAGGTTATACTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATACACCCCATCTTTATCCACTTCAAACCATCAAGGTTATACTCAT  99

seq1  TTACATCGAAAAGGTGTTGAAAGACTGTGATTTGCATAGGGTCACGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCGAAAAGGTGTTGAAAGACTGTGATTTGCATAGGGTCACGAGTT  149

seq1  AACACTGTGATTATGTAAAGCCAAGGAGTGTTTCTGATCATGTGTAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTGATTATGTAAAGCCAAGGAGTGTTTCTGATCATGTGTAATAA  199

seq1  ATCCCTGTGTCTTCTAGTATGCAGGACTGGAAGTCCCACAAGAGCTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGTGTCTTCTAGTATGCAGGACTGGAAGTCCCACAAGAGCTGTCA  249

seq1  TCAACGGCTTTTCCTGCAGCTGTGGTTGCTTTCTGAGAGTCTGTAATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGGCTTTTCCTGCAGCTGTGGTTGCTTTCTGAGAGTCTGTAATCCT  299

seq1  GACTTTGACCTTCACCCAAAAGGTCTCAAGTGCCCACTGGGCCTGGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGACCTTCACCCAAAAGGTCTCAAGTGCCCACTGGGCCTGGGCTG  349

seq1  GAGGGTCCCCACACAGGCGTCATCAGCATCCTTTATGACCTGCCAGGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCCCCACACAGGCGTCATCAGCATCCTTTATGACCTGCCAGGATC  399

seq1  TATGCTCCACAGAGCTCACCCTTAACATCTTACTTCTGTTTGTCCCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCCACAGAGCTCACCCTTAACATCTTACTTCTGTTTGTCCCCATC  449

seq1  TATGGCTTAACCCTAAGAGTTCCCTCCTGATTCCCAGACATCTTCCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTTAACCCTAAGAGTTCCCTCCTGATTCCCAGACATCTTCCTACA  499

seq1  GACTGGAACATGCAGAAACTTTGAACAAGACTCCAAACCTTTAAATCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAACATGCAGAAACTTTGAACAAGACTCCAAACCTTTAAATCCAC  549

seq1  CTGCAAGGAGATGAGAGTGGGCAAGGAAGACTGAGCCCCTGCAAACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGGAGATGAGAGTGGGCAAGGAAGACTGAGCCCCTGCAAACACAC  599

seq1  TCAAAGACATTTTATGTTGTGGGGAGCCATTCTCCTGATGGAAAGACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACATTTTATGTTGTGGGGAGCCATTCTCCTGATGGAAAGACTTC  649

seq1  ACAAGGCAGAGGGGTCACAGATCTTTTACAAGCCACGTAGAAATATCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCAGAGGGGTCACAGATCTTTTACAAGCCACGTAGAAATATCTTT  699

seq1  CCTGACCAAGTTGTCCTTTAACAAAAAAATGAGGCTAGGTTACTCTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCAAGTTGTCCTTTAACAAAAAAATGAGGCTAGGTTACTCTTCAG  749

seq1  GGGTTTCCATCATTGTGTGCAAAGAAACAGGGCCCAAATCCTGCCCAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCCATCATTGTGTGCAAAGAAACAGGGCCCAAATCCTGCCCAAGC  799

seq1  AGGCTTCTGATTCCTGATGTAATTTTGGAACCACCCCCTGGCTACCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTGATTCCTGATGTAATTTTGGAACCACCCCCTGGCTACCACAT  849

seq1  CTCCTTCAAGTCACTTGTGAGTTCAAGTAGGGTTGAAGGAGGAATCTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCAAGTCACTTGTGAGTTCAAGTAGGGTTGAAGGAGGAATCTGAT  899

seq1  TTAGCTCTGAAAATACATTGTCAGATCTAGGCTGAGATTCTCTTGGGAAG  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCTG-AAATACATTGTCAGATCTAGGCTGAGATTCTCTTGGGAAG  948

seq1  TGGGAAGTCGAGGGGGCGGTAACCACAGGATTTCTGGAGGCAGAACGCAG  1000
      |||||||||||||||||||| |||||||||||||||||||| | ||||||
seq2  TGGGAAGTCGAGGGGGCGGT-ACCACAGGATTTCTGGAGGC-GGACGCAG  996

seq1  AACCAGAGCTTTCCAAGGAAACCCAAGACTGCTAAGTAACTTCACCCACA  1050
      ||||||| ||||| | |||||||| |||||||| ||||||||  ||| ||
seq2  AACCAGAACTTTCTAGGGAAACCC-AGACTGCTCAGTAACTTTCCCCCCA  1045

seq1  TCAACCAGCATTAAAGAGCATGGAGTGACGTGGGTAGGTAGAACAGGCCG  1100
      |||||||||||| ||||| ||||||||||   ||||||||||||||| ||
seq2  TCAACCAGCATTTAAGAG-ATGGAGTGACTGTGGTAGGTAGAACAGG-CG  1093

seq1  AGGAGAGGAAT-GGGGTCCAAGGCCAACACTGGACGCTGCAGATGCAACT  1149
      ||| || |||| ||||| ||| | |||| |||  || |||   ||| |||
seq2  AGG-GAAGAATGGGGGTTCAAAG-CAACCCTGAGCG-TGCTAGTGC-ACT  1139

seq1  CAGGTCCAGCAGTTTC-TAGTCAGCC  1174
      |||||||||||||||| |||| ||||
seq2  CAGGTCCAGCAGTTTCATAGT-AGCC  1164

seq1: chr7_85596857_85597427
seq2: B6Ng01-153C11.g_68_638 (reverse)

seq1  AAGGAGAAGAAGACAATTAGCTGACTGGCCCTAAATAAGTACCTGCCCAG  50
      ||||| |||||||||||||||  |||||||||||||||||||||||||||
seq2  AAGGAAAAGAAGACAATTAGC-AACTGGCCCTAAATAAGTACCTGCCCAG  49

seq1  ACCTTGGGAAGCAGGTCTCTAGATTCACCCTCCTAGATGAGCAGACACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGGAAGCAGGTCTCTAGATTCACCCTCCTAGATGAGCAGACACCA  99

seq1  CTAAGGACTGAGTTCCAGTGTAGCTATCTGCCTCATGCATGCTACAGAAC  150
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  CTAAGGAATGAGTTCCAGTGTAGCTATCTACCTCATGCATGCTACAGAAC  149

seq1  TATGAAAAGAACCCCAAAGGAAGTCAGACTCTGCCCCACCCTCCTCCTAC  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATGAAAAGAACCCCAAAGAAAGTCAGACTCTGCCCCACCCTCCTCCTAC  199

seq1  CTCCAACCCAGAGAGCACACTGCAGCATAAAAATACAGAGCAGGAGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACCCAGAGAGCACACTGCAGCATAAAAATACAGAGCAGGAGTGGT  249

seq1  GTGAATGGCTTGGAATCCTGGCCAGTGTGAGGATTAGGAAGATTTTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGGCTTGGAATCCTGGCCAGTGTGAGGATTAGGAAGATTTTAACA  299

seq1  GGGGCAGCTGCTGTCACTGACATCCTTACCCCTTGACTAGGGTACGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGCTGCTGTCACTGACATCCTTACCCCTTGACTAGGGTACGTCTT  349

seq1  TCCTTCTCCGTTCCGGGCCCTCCTTCCATTTCCCTCTCACTAGTGAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCGTTCCGGGCCCTCCTTCCATTTCCCTCTCACTAGTGAATTC  399

seq1  CAGGCTTACCATCTTAATGAATAGCCCTCTAGACATTACCCTAAGACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTACCATCTTAATGAATAGCCCTCTAGACATTACCCTAAGACTGG  449

seq1  TTTCAGAACACAATGGCAATTGGAATTAAATACCAGTCAATGGGCCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAACACAATGGCAATTGGAATTAAATACCAGTCAATGGGCCAGGA  499

seq1  AATAGCACCAAGCATCAATCATCTCTATCTACAGTCACGTCCTTGCAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCACCAAGCATCAATCATCTCTATCTACAGTCACGTCCTTGCAATA  549

seq1  AATGGCC-TAAGTTATGAATTC  571
      ||||||| |  |||||||||||
seq2  AATGGCCTTTTGTTATGAATTC  571