BAC Information

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BAC

Clone NameB6Ng01-159A15
Chromosome7 (Build37)
Map Location 10,377,667 - 10,504,840
singlet/doubletdoublet
Overlap geneVmn2r47, 2810047C21Rik, LOC665625, LOC545911
Upstream geneLOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894
Downstream geneEG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159A15.bB6Ng01-159A15.g
ACCDH952823DH952824
length1,1631,099
definitionDH952823|Mus musculus domesticus DNA, BAC clone: B6Ng01-159A15, 5' end.DH952824|Mus musculus domesticus DNA, BAC clone: B6Ng01-159A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,377,667 - 10,378,840)(10,503,738 - 10,504,840)
sequence
gaattcacatggactccttccaatcagacactaacatggattcctcccaa
tcatctgtttcacacagactacatttggggcactgttgtccactctgtcc
ctggcacaaaggccaggaagccatgtgtccatgacctcaggaaacacact
tcagtcttcacactgagcttccattcaatctcagtatgcagacttagccc
acagatgttgtgctactacaattcctaccttccactaaagccagctgatc
tcatgcatgcctgagcatttctaatcatccccaacccatctcacttccag
acctggtctaatgtcatcactggagatttaagacctttgaatcttcagcc
aatggttaccataaagggaagcctgtccatgtaatccctgctgtggacgt
ggggacctttcattctgagcatgtgccagggaaatccaatggaaggacag
agacaattctagcacagagtcccaggactccacagtcccagagtccctta
tgtgttaagtgaggagtgtgattcctgggcatcctccacttaccttttcc
tggttggcaggtttcactgaatactgggaaacctgtagaaaaacaagatt
gtgagtaataagcaagagtgttggtatcccaaaatttcacccaagtcccc
tctcatacatgctgtcaggtacccactgggctccatcctttaatggtgtc
tcttactgggtgaccttggacaaagattcaatctcttctgtttgttatct
gaggataaaatttactgttttattgccgtgaagagacatcatggccaagg
tattcttacaattaaaagaaagcatttaactgggtgctagctaacagttt
cagagtgttcatctaggattagcttggtggggagaagagaggcttggggc
cagggcaatacctgaagactttacattctgatctacaggcagtagccaca
cacatacacacacacacacacacacacacacacacacacacacacacaca
tgcactggattagtgtgggcttctgaaacctcaaagttcactcccagcca
cgatgttttttcatcatacctcacctcctaatcctccaattcttctcaac
agtcacacccttggggaatgaccatggaattctaggctatgaactgttct
cattaaactaaca
gaattcaaggaacgaaagaggctttatgaagaggaaatggaagagctttc
taacttaaataagaatgtccctattttcgtgtgcatgctgtaacatgctg
taaacatcagatgcttcatcaagttcagctctaatgtcttcaaggcgatg
gaaaaactcattcaaatcttcttctttatgctcatcaaagactttaagtt
gtatatccaggccatcattcttaatgccctttaagtttggcaatatctct
ttcaatccacaacgcataaattcatttctgaggtgaagcctgaagtccaa
atcatcaggagatgtaacgagagcatttatgagctgcatacaagcaactt
tcttgcaatgttcggatgctttctcttcccactcatctagtttggcctga
tctatgcaaacatctacaaactgacttaagtccaaatctagtctttttct
gtatgtgaagtcagggtccgttccatctctatgtaatacaatctgtgaca
cacactcatcaattaatttgaaatactgctctcttataaaacgatcattg
cgaatgagcaggagatgctgaagaatagaaagaaaatgttcctctgctcg
agtttccttaactgtgtcccacagagtcatctgtgtcttacagcaaatca
catttggaattgtattcactgtagctgtttccacagttctggccaaaaca
gtcattgtggttctggctttcaaagtcacagacccaggaagaagattgag
aaacttcctggtatcagggacacccaactacattattcctatatgttccc
taatccaatgtgttctgtgtgctatctggctagcagtttctcctcccttt
gttgatattgatgaacacactctccatggccacatcatcattgtgtgcaa
caagggctcagatactgcattctactgtatcctgggatatttgggcctgc
atggcacttggaagctctctcctggctttcttggccaagattctggctga
cacattcaatgaagccaagttcttgaccttcagcaagctggtgttcggaa
gtctggtcaccttcctccctgtctaccataaggacaaggcaaacaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_10377667_10378840
seq2: B6Ng01-159A15.b_46_1208

seq1  GAATTCACATGGACTCCTTCCAATCAGACACTAACATGGATTCCTCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGACTCCTTCCAATCAGACACTAACATGGATTCCTCCCAA  50

seq1  TCATCTGTTTCACACAGACTACATTTGGGGCACTGTTGTCCACTCTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTTTCACACAGACTACATTTGGGGCACTGTTGTCCACTCTGTCC  100

seq1  CTGGCACAAAGGCCAGGAAGCCATGTGTCCATGACCTCAGGAAACACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACAAAGGCCAGGAAGCCATGTGTCCATGACCTCAGGAAACACACT  150

seq1  TCAGTCTTCACACTGAGCTTCCATTCAATCTCAGTATGCAGACTTAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTCACACTGAGCTTCCATTCAATCTCAGTATGCAGACTTAGCCC  200

seq1  ACAGATGTTGTGCTACTACAATTCCTACCTTCCACTAAAGCCAGCTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTTGTGCTACTACAATTCCTACCTTCCACTAAAGCCAGCTGATC  250

seq1  TCATGCATGCCTGAGCATTTCTAATCATCCCCAACCCATCTCACTTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATGCCTGAGCATTTCTAATCATCCCCAACCCATCTCACTTCCAG  300

seq1  ACCTGGTCTAATGTCATCACTGGAGATTTAAGACCTTTGAATCTTCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTCTAATGTCATCACTGGAGATTTAAGACCTTTGAATCTTCAGCC  350

seq1  AATGGTTACCATAAAGGGAAGCCTGTCCATGTAATCCCTGCTGTGGACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTACCATAAAGGGAAGCCTGTCCATGTAATCCCTGCTGTGGACGT  400

seq1  GGGGACCTTTCATTCTGAGCATGTGCCAGGGAAATCCAATGGAAGGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCTTTCATTCTGAGCATGTGCCAGGGAAATCCAATGGAAGGACAG  450

seq1  AGACAATTCTAGCACAGAGTCCCAGGACTCCACAGTCCCAGAGTCCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTCTAGCACAGAGTCCCAGGACTCCACAGTCCCAGAGTCCCTTA  500

seq1  TGTGTTAAGTGAGGAGTGTGATTCCTGGGCATCCTCCACTTACCTTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAAGTGAGGAGTGTGATTCCTGGGCATCCTCCACTTACCTTTTCC  550

seq1  TGGTTGGCAGGTTTCACTGAATACTGGGAAACCTGTAGAAAAACAAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGCAGGTTTCACTGAATACTGGGAAACCTGTAGAAAAACAAGATT  600

seq1  GTGAGTAATAAGCAAGAGTGTTGGTATCCCAAAATTTCACCCAAGTCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTAATAAGCAAGAGTGTTGGTATCCCAAAATTTCACCCAAGTCCCC  650

seq1  TCTCATACATGCTGTCAGGTACCCACTGGGCTCCATCCTTTAATGGTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATACATGCTGTCAGGTACCCACTGGGCTCCATCCTTTAATGGTGTC  700

seq1  TCTTACTGGGTGACCTTGGACAAAGATTCAATCTCTTCTGTTTGTTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGGGTGACCTTGGACAAAGATTCAATCTCTTCTGTTTGTTATCT  750

seq1  GAGGATAAAATTTACTGTTTTATTGCCGTGAAGAGACATCATGGCCAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAAAATTTACTGTTTTATTGCCGTGAAGAGACATCATGGCCAAGG  800

seq1  TATTCTTACAATTAAAAGAAAGCATTTAACTGGGTGCTAGCTAACAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTACAATTAAAAGAAAGCATTTAACTGGGTGCTAGCTAACAGTTT  850

seq1  CAGAGTGTTCATCTAGGATTAGCTTGGTGGGGAGAAGAGAGGCTTGGGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTTCATCTAGGATTAGCTTGGTGGGGAGAAGAGAGGCTTGGGGC  900

seq1  CAGGGCAATACCTGAAGACTTTACATTCTGATCTACAGGCAGTAGCCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAATACCTGAAGACTTTACATTCTGATCTACAGGCAGTAGCCACA  950

seq1  CACATACACACACACACACACACACACACACACACACACACACACACACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACACACACACACACACACACACACACACACACACACACACA  1000

seq1  TGCACTGGATTAGGTGTGGGCTTCTGAAACCTCAAAGTTCACTCCCAGCC  1050
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGCACTGGATTA-GTGTGGGCTTCTGAAACCTCAAAGTTCACTCCCAGCC  1049

seq1  ACGATGTTTCTCCATCAGTACCTCACCTCCTAATCCTTCCAATTCTTCTC  1100
      ||||||||| | ||||| |||||||||||||||||| |||||||||||||
seq2  ACGATGTTTTTTCATCA-TACCTCACCTCCTAATCC-TCCAATTCTTCTC  1097

seq1  AAACAGTTCCACACCC-TGGGGATTGAGCATTGAAATATCTAAGCCTATG  1149
       ||||||  ||||||| |||||| ||| ||| ||| | |   || |||||
seq2  -AACAGT--CACACCCTTGGGGAATGACCATGGAATTCT---AGGCTATG  1141

seq1  GAAACTGTTCTCATTAAAACTAACA  1174
        ||||||||||||| |||||||||
seq2  --AACTGTTCTCATT-AAACTAACA  1163

seq1: chr7_10503738_10504840
seq2: B6Ng01-159A15.g_67_1165 (reverse)

seq1  CCATGTGTTTGCCCTTGGTGCTATGGTAGACAGGGAGGAAGGTGACCCAG  50
      |||| |||||| |||||    ||||||||||||||||||||||||||   
seq2  CCAT-TGTTTG-CCTTGTCCTTATGGTAGACAGGGAGGAAGGTGACC---  45

seq1  ACACTGCAGAACACTAGCATGCTGAAGGTCAAGAACTTGGCTTCATTGAA  100
      | ||| | |||||| ||| |||||||||||||||||||||||||||||||
seq2  AGACTTCCGAACACCAGCTTGCTGAAGGTCAAGAACTTGGCTTCATTGAA  95

seq1  TGTGTCAGGCAGATTCTTGGCCAAGAAAGCCAGAGAGA-AGCTTCCAAGT  149
      |||||||| |||| ||||||||||||||||||| |||| |||||||||||
seq2  TGTGTCAGCCAGAATCTTGGCCAAGAAAGCCAG-GAGAGAGCTTCCAAGT  144

seq1  GCCATGCAGG-CCAAATATCCCAGGATACAGTAGAATGCAGTATCTGAGC  198
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCAGGCCCAAATATCCCAGGATACAGTAGAATGCAGTATCTGAGC  194

seq1  CCTTGTTGCACACAATGATGATGTGGCCATGGAGAGTGTGTTCATCAATA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTGCACACAATGATGATGTGGCCATGGAGAGTGTGTTCATCAATA  244

seq1  TCAACAAAGGGAGGAGAAACTGCTAGCCAGATAGCACACAGAACACATTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAGGGAGGAGAAACTGCTAGCCAGATAGCACACAGAACACATTG  294

seq1  GATTAGGGAACATATAGGAATAATGTAGTTGGGTGTCCCTGATACCAGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGGAACATATAGGAATAATGTAGTTGGGTGTCCCTGATACCAGGA  344

seq1  AGTTTCTCAATCTTCTTCCTGGGTCTGTGACTTTGAAAGCCAGAACCACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCAATCTTCTTCCTGGGTCTGTGACTTTGAAAGCCAGAACCACA  394

seq1  ATGACTGTTTTGGCCAGAACTGTGGAAACAGCTACAGTGAATACAATTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTTTTGGCCAGAACTGTGGAAACAGCTACAGTGAATACAATTCC  444

seq1  AAATGTGATTTGCTGTAAGACACAGATGACTCTGTGGGACACAGTTAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGATTTGCTGTAAGACACAGATGACTCTGTGGGACACAGTTAAGG  494

seq1  AAACTCGAGCAGAGGAACATTTTCTTTCTATTCTTCAGCATCTCCTGCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCGAGCAGAGGAACATTTTCTTTCTATTCTTCAGCATCTCCTGCTC  544

seq1  ATTCGCAATGATCGTTTTATAAGAGAGCAGTATTTCAAATTAATTGATGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCAATGATCGTTTTATAAGAGAGCAGTATTTCAAATTAATTGATGA  594

seq1  GTGTGTGTCACAGATTGTATTACATAGAGATGGAACGGACCCTGACTTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCACAGATTGTATTACATAGAGATGGAACGGACCCTGACTTCA  644

seq1  CATACAGAAAAAGACTAGATTTGGACTTAAGTCAGTTTGTAGATGTTTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGAAAAAGACTAGATTTGGACTTAAGTCAGTTTGTAGATGTTTGC  694

seq1  ATAGATCAGGCCAAACTAGATGAGTGGGAAGAGAAAGCATCCGAACATTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCAGGCCAAACTAGATGAGTGGGAAGAGAAAGCATCCGAACATTG  744

seq1  CAAGAAAGTTGCTTGTATGCAGCTCATAAATGCTCTCGTTACATCTCCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGTTGCTTGTATGCAGCTCATAAATGCTCTCGTTACATCTCCTG  794

seq1  ATGATTTGGACTTCAGGCTTCACCTCAGAAATGAATTTATGCGTTGTGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGGACTTCAGGCTTCACCTCAGAAATGAATTTATGCGTTGTGGA  844

seq1  TTGAAAGAGATATTGCCAAACTTAAAGGGCATTAAGAATGATGGCCTGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGAGATATTGCCAAACTTAAAGGGCATTAAGAATGATGGCCTGGA  894

seq1  TATACAACTTAAAGTCTTTGATGAGCATAAAGAAGAAGATTTGAATGAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAACTTAAAGTCTTTGATGAGCATAAAGAAGAAGATTTGAATGAGT  944

seq1  TTTTCCATCGCCTTGAAGACATTAGAGCTGAACTTGATGAAGCATCTGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATCGCCTTGAAGACATTAGAGCTGAACTTGATGAAGCATCTGAT  994

seq1  GTTTACAGCATGTTACAGCATGCACACGAAAATAGGGACATTCTTATTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAGCATGTTACAGCATGCACACGAAAATAGGGACATTCTTATTTA  1044

seq1  AGTTAGAAAGCTCTTCCATTTCCTCTTCATAAAGCCTCTTTCGTTCCTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAAGCTCTTCCATTTCCTCTTCATAAAGCCTCTTTCGTTCCTTG  1094

seq1  AATTC  1103
      |||||
seq2  AATTC  1099