BAC Information

Click to search

BAC

Clone NameB6Ng01-159E04
Chromosome7 (Build37)Y (Build37)
Map Location 134,930,831 - 134,930,928573,321 - 573,513
singlet/doubletsingletsinglet
Overlap geneSetd1a
Upstream genePpp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c
Downstream geneHsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159E04.bB6Ng01-159E04.g
ACCDH952976DH952977
length98382
definitionDH952976|Mus musculus domesticus DNA, BAC clone: B6Ng01-159E04, 5' end.DH952977|Mus musculus domesticus DNA, BAC clone: B6Ng01-159E04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(134,930,831 - 134,930,928)(573,321 - 573,513)
sequence
agtggtgggaaaactggtgggcctcccttcccaatggtgggaaatggtgt
atgggagtggggtggggctgtggaggatggtggttgaggtgggttgtt
tagagtagagcatcacaagagtgggggagtagagcaccacaccatagcaa
caaaataacaggaatcaataaacaccggtcattgatgactctcagtaccg
ataaaagactagcagattgtattagaaaacaggactctcagggcctggca
aacacagaagtggatgctcacagtcagctattggatggaacacagggtcc
ccaatggaggagctagagaaagtacccaaggagctaaaggggtctgcaac
cctataggtggaacaacaatatgaactaaccagtaccccccagagctgtg
tctctagctgcatatgtagcaggccatcattgggaagagagaccccttgg
tcttgcaaactttatatgcctcagtacggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_134930831_134930928
seq2: B6Ng01-159E04.b_52_149

seq1  AGTGGTGGGAAAACTGGTGGGCCTCCCTTCCCAATGGTGGGAAATGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGGAAAACTGGTGGGCCTCCCTTCCCAATGGTGGGAAATGGTGT  50

seq1  ATGGGAGTGGGGTGGGGCTGTGGAGGATGGTGGTTGAGGTGGGTTGTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGTGGGGTGGGGCTGTGGAGGATGGTGGTTGAGGTGGGTTGTT  98

seq1: chrY_573321_573513
seq2: B6Ng01-159E04.g_277_455

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTA-TCCACAGAGCTCATGTC  98
      |||| ||||||||||||||||| |||||||||  || |||||||  ||||
seq2  ATAGGTGGAACAACAATATGAACTAACCAGTACCCCCCAGAGCT-GTGTC  99

seq1  TCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAG  148
      |||||||||||||||| ||               ||||||||||||||||
seq2  TCTAGCTGCATATGTAGCA---------------GGCCATCATTGGGAAG  134

seq1  AGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGG  193
      |||| |||||||||||||||||||||||||||| |||||| ||||
seq2  AGAGACCCCTTGGTCTTGCAAACTTTATATGCCTCAGTACGGGGG  179