BAC Information

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BAC

Clone NameB6Ng01-160O13
Chromosome7 (Build37)7 (Build37)
Map Location 11,355,395 - 11,356,12611,504,681 - 11,505,008
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13
Downstream geneBQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160O13.bB6Ng01-160O13.g
ACCDH954162DH954163
length969329
definitionDH954162|Mus musculus domesticus DNA, BAC clone: B6Ng01-160O13, 5' end.DH954163|Mus musculus domesticus DNA, BAC clone: B6Ng01-160O13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,355,395 - 11,356,126)(11,504,681 - 11,505,008)
sequence
gaattctccccctttctttttatatgtctgccaaagttctggaatgtcct
gcctcatcgtagctacagatcacaggaatgctctaaagatgagtggaaac
acaacgatttactaataaaatagtgccaataataatagcaagtaggaata
tatattgaacccagtccagaagattcaatgcacttaggttattttttaca
tttctggccaattcatcagtgttccaagtgtccgagtgacttttgctaat
atctaaaatttctgcctttctagccttaatatatgctatgtcctgaccta
ttgttaagactactacttctaagacattgacctttgcctccaatttttta
catggctctatggtgtattattaataaaccacaacctcttggcatgtacc
tctgtcttagattaatatggttccaaagtctggttgccagtcattggcta
accggccctcatagcacaccttattcccaaatcagaccaaaagccatgat
atatattgaatatgcttcttcatattgattaacaactgccacctacactg
ttggaggcaagggggcacacctgctacagtcaggctgaagatcattgact
ggcctgcttaaaaaacaaagttgagacagtgaaaagcaacagtacaaaag
cttccttggggaagtccaggtaatccattcaattgcaaattagcaatgat
caattagacttagagctccaggtgtgtgggaggttcttatacgcgttctc
acgaccggccaggaaagaacacaacaaaccagaatcttctgcggcaaaac
tttattgcttacatcttcaggagcaggagcgcaaaaaaccccaagcccca
aaaacgaaagcccccttcttacatctttaggagccagagcgccagcgcgc
cagcgcgcagagcgaaaagcgcaagcagagagcgcaagtaagagagagaa
tggcagaaacccgtccctt
cagaccaacctaggctacagtgagacaaggtctcaaaaaacaaaaaaaca
aacaaaaaaacaaacaataaaaacagcaataaaaacaaaaactagaaggc
tatagatttttgtttttggcatagtgactactcttaaaatatatctctta
gctagctggctttagggcacacatataatgacagcacctgggtggtagag
gtgtgtgcatattgggagtgcagggaggaggggaggagtgtgtctctgtg
agttcataactatccagaagggaatacaatgggagaccagtgtgttttgc
ttgtttttcaggtggtgttttgttttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11355395_11356126
seq2: B6Ng01-160O13.b_50_781

seq1  ATTCTCCCCCTTTCTTTTTATATGTCTGCCAAAGTTCTGGAATGTCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCCCTTTCTTTTTATATGTCTGCCAAAGTTCTGGAATGTCCTGC  50

seq1  CTCATCGTAGCTACAGATCACAGGAATGCTCTAAAGATGAGTGGAAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCGTAGCTACAGATCACAGGAATGCTCTAAAGATGAGTGGAAACAC  100

seq1  AACAATTTATTAATAAAATAGTGCCAATAATAATAGCAAGTAGGAATATA  150
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACGATTTACTAATAAAATAGTGCCAATAATAATAGCAAGTAGGAATATA  150

seq1  TATTGAACCCAGTCCAGAAGATTCAATGCACTTAGGTTATTTTTTACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAACCCAGTCCAGAAGATTCAATGCACTTAGGTTATTTTTTACATT  200

seq1  TCTGGCCAATTCATCAATGTTCCAAGTGTCCAAGTGACTTTTGCTAATAT  250
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  TCTGGCCAATTCATCAGTGTTCCAAGTGTCCGAGTGACTTTTGCTAATAT  250

seq1  CTGAAATTTTTGCCTTTCTAGCCTTAATATATGCTATGTCCTGACCTATT  300
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTTCTGCCTTTCTAGCCTTAATATATGCTATGTCCTGACCTATT  300

seq1  GTTAAGACTACTACTTCTAAGACATTGACCTTTGCCTCCTATTTTTTACA  350
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTAAGACTACTACTTCTAAGACATTGACCTTTGCCTCCAATTTTTTACA  350

seq1  TGGCTCTATGGTGTATTATTAATAAACCACAACCTCTTGGCATGTACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTATGGTGTATTATTAATAAACCACAACCTCTTGGCATGTACCTC  400

seq1  TGTCTTAGATTAATATGATTCCGAAGTCTGGTTGCCAGTCATTGGCTAAC  450
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  TGTCTTAGATTAATATGGTTCCAAAGTCTGGTTGCCAGTCATTGGCTAAC  450

seq1  CGGCCCTCATAGCACACCTTATTCCCAAATCAGACCAAAAGCCACGATAT  500
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CGGCCCTCATAGCACACCTTATTCCCAAATCAGACCAAAAGCCATGATAT  500

seq1  ATATTGAATATGCTTCTTCATATTGATTAACAACTGTCACCTACACTTTT  550
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  ATATTGAATATGCTTCTTCATATTGATTAACAACTGCCACCTACACTGTT  550

seq1  GGAGGCAAGGGGGCACACCTGCTACAGTCAGGCTGAAGATCATTGACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAAGGGGGCACACCTGCTACAGTCAGGCTGAAGATCATTGACTGG  600

seq1  CCTGCTTAAAAAACAAAGTTGAGACAGTGAAAAGCAACAGTACAAAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTAAAAAACAAAGTTGAGACAGTGAAAAGCAACAGTACAAAAGCT  650

seq1  TCTTTGGGGAAGTCCAGGTACTCCATTCAATTGCAAATTAGCAATGATCA  700
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCCTTGGGGAAGTCCAGGTAATCCATTCAATTGCAAATTAGCAATGATCA  700

seq1  ATTAGACTTAGAGCTCCAGATGTGTGGGAGGT  732
      ||||||||||||||||||| ||||||||||||
seq2  ATTAGACTTAGAGCTCCAGGTGTGTGGGAGGT  732

seq1: chr7_11504681_11505008
seq2: B6Ng01-160O13.g_75_403

seq1  CAGACCAACCTAGGCTACAGTGAGACAAGGTCTCAAAAAACAAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAACCTAGGCTACAGTGAGACAAGGTCTCAAAAAACAAAAAAACA  50

seq1  AACAAAAAAACAAACAATAAAAACAGCAATAAAAACAAAAACTAGAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAACAAACAATAAAAACAGCAATAAAAACAAAAACTAGAAGGC  100

seq1  TATAGATTTTTGTTTTTGGCATAGTGACTACTCTTAAAATATATCTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTTTTGTTTTTGGCATAGTGACTACTCTTAAAATATATCTCTTA  150

seq1  GCTAGCTGGCTTTAGGGCACACATATAATGACAGCACCTGGGTGGTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTGGCTTTAGGGCACACATATAATGACAGCACCTGGGTGGTAGAG  200

seq1  GTGTGTGCATATTGGGAGTGCAGGGAGGAGGGGAGGAGTGTGTCTCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCATATTGGGAGTGCAGGGAGGAGGGGAGGAGTGTGTCTCTGTG  250

seq1  AGTTCAAAACTATCCAGAAGGGAATACAATGGGAGACCAGTGTG-TTTGC  299
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTTCATAACTATCCAGAAGGGAATACAATGGGAGACCAGTGTGTTTTGC  300

seq1  TTGTTTTTCAGGTGGTGTTTTGTTTTTTC  328
      |||||||||||||||||||||||||||||
seq2  TTGTTTTTCAGGTGGTGTTTTGTTTTTTC  329