BAC Information

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BAC

Clone NameB6Ng01-162G11
Chromosome7 (Build37)
Map Location 6,138,383 - 6,257,494
singlet/doubletdoublet
Overlap geneZfp444, Galp, Zfp371, EG627821, Zfp667
Upstream geneV1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787
Downstream geneZfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162G11.bB6Ng01-162G11.g
ACCDH955250DH955251
length1,0781,162
definitionDH955250|Mus musculus domesticus DNA, BAC clone: B6Ng01-162G11, 5' end.DH955251|Mus musculus domesticus DNA, BAC clone: B6Ng01-162G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,138,383 - 6,139,456)(6,256,344 - 6,257,494)
sequence
gaattccagcactcaggaggcagaggtagaggctggccttgtagtgagtt
tagaagatggctctcagtctgcaaagctagaaactgtctgctagaaacag
gcagagcaggtgcctacagaagccatactgctaggaatgcttacgagtct
tgaccagcaggtggaattatatgcatggctagtcaactgtgcctctgctg
tgtgatctaggtcaccctccctccagccagtggtccagtacagttaagac
gggaggtgaggagaggggtgctgtgtgtgtaactcctgcatctctcattt
cctagcaccagaggaattctgagaatcacttcttgggaacatgagcttag
aaatctaccctgtgtcctgcctggttcttagcttcatgcttttctgagat
aaaggttgcttcaaatttacattttacccagacaccagcagttcaagtaa
gattcaaaacaaaggaatgagttacctgttacttgatagcaaatgccccc
aaagctatgaagttgttgtgggccagagggtaggcgtgactggggaaagt
ggatctgtcacagggcctcttgaagaggccacaaggtattgaccatggct
gtcaccacttaaaggctgacttgaggctagaaccccatttccactgaatt
tgcttgcactggttgacaggagactgagtttgaacagcctgcagcagcag
cagccagcttcccttcggagatgcagcgaggcagctcagtggctaaaggt
cctttgtcatcaagcctgatgaggaactgagccttcacatggtgaggagg
aagccaactgtcaagagtcattctcttgaccttcatatgtacaatgtatt
ttcccatcctgacacacacacacacacacacactcacacatacacacaca
cacacacacacacacacggtagagagaaggttcttcattaaaagctcctt
gctgctcctgcagaggactggagtttggtttcccagtgccacccaggtgc
tccgactttctgatacttcagctctcagaggattggatgactcttcttta
catgtttgcttctgtacctaccctccaa
gaattctttcatgctgcgcaagatgagcactctggctgaaggctttccca
cacagatcacattcataaggtctgtcctcactgtgaattctcttatgccg
cgtaagagatattcggtggctgaatgctttcccacattcttcacactgat
agggcttctctccggtatgaattctctgatgttcactaagaaatgactgg
cggccaaacactttactacatttattgcacttgaaaggtttctcttccga
atggatgttgagatgcactttaagatttttcatcccaccaaacatctttc
cacattccttgcatgcaatgagtttctttttccttttatgaattttctgg
tgctgaataaaggatgaaaggcgactacacaccttctcacacttgctgca
cttaaactgcttctccccactatgaattcttaggtgcagaataagggtgg
agagccgtccaaagtctttctgacatttatcacatttgtagggattccct
gaagtgtgaattctctgatggagcattaaggctgagatcctactaaagga
cttcccgcatttcccacacataaaagggttttccgactggcaagttttct
gcctggcactctgaattaaggccttcttactttcatgagttttctttcca
atacaaactcttttatgtacaaggactggctgctttttgaagcctctttt
tgtatttattgtatttttgtattttctttctgttgtgactcctcttatga
agtaaaagggatgacatccgactgaagactttcccacacttcctgcactg
gtgaacgctgtcagtagtgtgattattacggtgtagactgagggaggggc
atgaatctgaggccttctcatggtgaaactttcctttccattatgaattc
ttctatgtatcataagagtaactttttattaaaattgtcccacactttat
cacattcatagcttttattccaattgtgacccgctgatgaagaatgaggg
gatatgattctgcttgaaacgtgttctacaagtactgcattcattaagac
ctctcctccaggtgttaaaagtccttgatgaagtttaaagagattagcct
tccaaaaaaggtttttcccacccagagatccactttaaaggattcttgcc
tgtgaatgttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6138383_6139456
seq2: B6Ng01-162G11.b_44_1121

seq1  GAATTCCAGCACTCAGGAGGCAGAGGTAGAGGCTGGCCTTGTAGTGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACTCAGGAGGCAGAGGTAGAGGCTGGCCTTGTAGTGAGTT  50

seq1  TAGAAGATGGCTCTCAGTCTGCAAAGCTAGAAACTGTCTGCTAGAAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATGGCTCTCAGTCTGCAAAGCTAGAAACTGTCTGCTAGAAACAG  100

seq1  GCAGAGCAGGTGCCTACAGAAGCCATACTGCTAGGAATGCTTACGAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAGGTGCCTACAGAAGCCATACTGCTAGGAATGCTTACGAGTCT  150

seq1  TGACCAGCAGGTGGAATTATATGCATGGCTAGTCAACTGTGCCTCTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGCAGGTGGAATTATATGCATGGCTAGTCAACTGTGCCTCTGCTG  200

seq1  TGTGATCTAGGTCACCCTCCCTCCAGCCAGTGGTCCAGTACAGTTAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTAGGTCACCCTCCCTCCAGCCAGTGGTCCAGTACAGTTAAGAC  250

seq1  GGGAGGTGAGGAGAGGGGTGCTGTGTGTGTAACTCCTGCATCTCTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGAGGAGAGGGGTGCTGTGTGTGTAACTCCTGCATCTCTCATTT  300

seq1  CCTAGCACCAGAGGAATTCTGAGAATCACTTCTTGGGAACATGAGCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACCAGAGGAATTCTGAGAATCACTTCTTGGGAACATGAGCTTAG  350

seq1  AAATCTACCCTGTGTCCTGCCTGGTTCTTAGCTTCATGCTTTTCTGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACCCTGTGTCCTGCCTGGTTCTTAGCTTCATGCTTTTCTGAGAT  400

seq1  AAAGGTTGCTTCAAATTTACATTTTACCCAGACACCAGCAGTTCAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGCTTCAAATTTACATTTTACCCAGACACCAGCAGTTCAAGTAA  450

seq1  GATTCAAAACAAAGGAATGAGTTACCTGTTACTTGATAGCAAATGCCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAAACAAAGGAATGAGTTACCTGTTACTTGATAGCAAATGCCCCC  500

seq1  AAAGCTATGAAGTTGTTGTGGGCCAGAGGGTAGGCGTGACTGGGGAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTATGAAGTTGTTGTGGGCCAGAGGGTAGGCGTGACTGGGGAAAGT  550

seq1  GGATCTGTCACAGGGCCTCTTGAAGAGGCCACAAGGTATTGACCATGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGTCACAGGGCCTCTTGAAGAGGCCACAAGGTATTGACCATGGCT  600

seq1  GTCACCACTTAAAGGCTGACTTGAGGCTAGAACCCCATTTCCACTGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCACTTAAAGGCTGACTTGAGGCTAGAACCCCATTTCCACTGAATT  650

seq1  TGCTTGCACTGGTTGACAGGAGACTGAGTTTGAACAGCCTGCAGCAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCACTGGTTGACAGGAGACTGAGTTTGAACAGCCTGCAGCAGCAG  700

seq1  CAGCCAGCTTCCCTTCGGAGATGCAGCGAGGCAGCTCAGTGGCTAAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCTTCCCTTCGGAGATGCAGCGAGGCAGCTCAGTGGCTAAAGGT  750

seq1  CC-TTGTCATCAAGCCTGATGAGGAACTGAGCC-TCACATGGTGAGGAGG  798
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTTTGTCATCAAGCCTGATGAGGAACTGAGCCTTCACATGGTGAGGAGG  800

seq1  AAGCCAACTGTCAAGAGTCATTCTCTTGACCTTCATATGTACAATGTA-T  847
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGCCAACTGTCAAGAGTCATTCTCTTGACCTTCATATGTACAATGTATT  850

seq1  TTCCCATCCCTGACACACACACACACACACACA--CACACACACACACAC  895
      ||||||| |||||||||||||||||||||||||  |||||| ||||||||
seq2  TTCCCAT-CCTGACACACACACACACACACACACTCACACATACACACAC  899

seq1  ACACACACACACACACACGGTAGAGAGAAGGCTCTTCAGTTAAAAGCT-C  944
      ||||||||||||||||||||||||||||||| |||||| ||||||||| |
seq2  ACACACACACACACACACGGTAGAGAGAAGGTTCTTCA-TTAAAAGCTCC  948

seq1  TTGCTGCTCCTGCAGAGGACTGGAGTTTGG-TTCCCAGTGCCCACGCCAG  993
      |||||||||||||||||||||||||||||| ||||||||| |||| ||||
seq2  TTGCTGCTCCTGCAGAGGACTGGAGTTTGGTTTCCCAGTG-CCAC-CCAG  996

seq1  GTGGCTCACGACTTCCTGTAACTTCAGCTC-CAGAGGATTGGATGCACAC  1042
      || |||| |||||| |||  |||||||||| |||||||||||||| || |
seq2  GT-GCTC-CGACTTTCTGATACTTCAGCTCTCAGAGGATTGGATG-ACTC  1043

seq1  T--CTTACATGTATGCTCATGTACCAACCC-CCAA  1074
      |   |||||||| ||||  |||||| |||| ||||
seq2  TTCTTTACATGTTTGCTTCTGTACCTACCCTCCAA  1078

seq1: chr7_6256344_6257494
seq2: B6Ng01-162G11.g_71_1232 (reverse)

seq1  GGAACATT--CAGGCAAGAAATCTTTAAAGTGTA-ATCTTTGTGGG-AAA  46
      ||||||||  ||||||||||  |||||||||| |  |||  ||||| |||
seq2  GGAACATTCACAGGCAAGAATCCTTTAAAGTGGATCTCTGGGTGGGAAAA  50

seq1  ACCTTTTTTCGAA-GCTTATCTC-TTAAACTTCATCAA-GAC-TTTCACA  92
      ||||||||| ||| ||| ||||| |||||||||||||| ||| ||| |||
seq2  ACCTTTTTTGGAAGGCTAATCTCTTTAAACTTCATCAAGGACTTTTAACA  100

seq1  -CTGGA-GAGAGGTCTT-ATGAATGCAGTACTTGTAG-ACACGTTTTCAG  138
       ||||| |||||||||| ||||||||||||||||||| ||||| ||||| 
seq2  CCTGGAGGAGAGGTCTTAATGAATGCAGTACTTGTAGAACACG-TTTCAA  149

seq1  GCAG-ATCTTAT-CCCTCATTCTTCATCAGCGGGTTCACAATTGGAATAA  186
      |||| ||| ||| ||||||||||||||||||||| |||||||||||||||
seq2  GCAGAATCATATCCCCTCATTCTTCATCAGCGGG-TCACAATTGGAATAA  198

seq1  AAGCTATGAATGTGAT-AAGTGTGGGGACATTTTTAATAAAAAGTTAACT  235
      |||||||||||||||| |||||| |||||| ||||||||||||||| |||
seq2  AAGCTATGAATGTGATAAAGTGT-GGGACAATTTTAATAAAAAGTT-ACT  246

seq1  CTTATGATACATAGAAGAATTCATAATGGAAAGGAAAGTTTTCACCATGA  285
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTATGATACATAGAAGAATTCATAATGGAAAGGAAAG-TTTCACCATGA  295

seq1  GAAGGCCTCAGATTCATGCCCCTCCCTCAGTCTACACCGTAATAATCACA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCTCAGATTCATGCCCCTCCCTCAGTCTACACCGTAATAATCACA  345

seq1  CTACTGACAGCGTTCACCAGTGCAGGAAGTGTGGGAAAGTCTTCAGTCGG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGACAGCGTTCACCAGTGCAGGAAGTGTGGGAAAGTCTTCAGTCGG  395

seq1  ATGTCATCCCTTTTACTTCATAAGAGGAGTCACAACAGAAAGAAAATACA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATCCCTTTTACTTCATAAGAGGAGTCACAACAGAAAGAAAATACA  445

seq1  AAAATACAATAAATAC-AAAAGAGGCTTCAAAAAGCAGCCAGTCCTTGTA  484
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAATACAATAAATACAAAAAGAGGCTTCAAAAAGCAGCCAGTCCTTGTA  495

seq1  CATAAAAGAGTTTGTATTGGAAAGAAAACTCATGAAAGTAAGAAGGCCTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGAGTTTGTATTGGAAAGAAAACTCATGAAAGTAAGAAGGCCTT  545

seq1  AATTCAGAGTGCCAGGCAGAAAACTTGCCAGTCGGAAAACCCTTTTATGT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAGTGCCAGGCAGAAAACTTGCCAGTCGGAAAACCCTTTTATGT  595

seq1  GTGGGAAATGCGGGAAGTCCTTTAGTAGGATCTCAGCCTTAATGCTCCAT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAATGCGGGAAGTCCTTTAGTAGGATCTCAGCCTTAATGCTCCAT  645

seq1  CAGAGAATTCACACTTCAGGGAATCCCTACAAATGTGATAAATGTCAGAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATTCACACTTCAGGGAATCCCTACAAATGTGATAAATGTCAGAA  695

seq1  AGACTTTGGACGGCTCTCCACCCTTATTCTGCACCTAAGAATTCATAGTG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGGACGGCTCTCCACCCTTATTCTGCACCTAAGAATTCATAGTG  745

seq1  GGGAGAAGCAGTTTAAGTGCAGCAAGTGTGAGAAGGTGTGTAGTCGCCTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGCAGTTTAAGTGCAGCAAGTGTGAGAAGGTGTGTAGTCGCCTT  795

seq1  TCATCCTTTATTCAGCACCAGAAAATTCATAAAAGGAAAAAGAAACTCAT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTTTATTCAGCACCAGAAAATTCATAAAAGGAAAAAGAAACTCAT  845

seq1  TGCATGCAAGGAATGTGGAAAGATGTTTGGTGGGATGAAAAATCTTAAAG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCAAGGAATGTGGAAAGATGTTTGGTGGGATGAAAAATCTTAAAG  895

seq1  TGCATCTCAACATCCATTCGGAAGAGAAACCTTTCAAGTGCAATAAATGT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCAACATCCATTCGGAAGAGAAACCTTTCAAGTGCAATAAATGT  945

seq1  AGTAAAGTGTTTGGCCGCCAGTCATTTCTTAGTGAACATCAGAGAATTCA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTGTTTGGCCGCCAGTCATTTCTTAGTGAACATCAGAGAATTCA  995

seq1  TACCGGAGAGAAGCCCTATCAGTGTGAAGAATGTGGGAAAGCATTCAGCC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGGAGAGAAGCCCTATCAGTGTGAAGAATGTGGGAAAGCATTCAGCC  1045

seq1  ACCGAATATCTCTTACGCGGCATAAGAGAATTCACAGTGAGGACAGACCT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAATATCTCTTACGCGGCATAAGAGAATTCACAGTGAGGACAGACCT  1095

seq1  TATGAATGTGATCTGTGTGGGAAAGCCTTCAGCCAGAGTGCTCATCTTGC  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGTGATCTGTGTGGGAAAGCCTTCAGCCAGAGTGCTCATCTTGC  1145

seq1  GCAGCATGAAAGAATTC  1151
      |||||||||||||||||
seq2  GCAGCATGAAAGAATTC  1162