BAC Information

Click to search

BAC

Clone NameB6Ng01-163E10
Chromosome7 (Build37)
Map Location 105,058,874 - 105,059,906
singlet/doubletsinglet
Overlap genePak1
Upstream geneNars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594
Downstream geneGdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163E10.bB6Ng01-163E10.g
ACCDH955905DH955906
length1,0251,102
definitionDH955905|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E10, 5' end.DH955906|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctatttagaaatggcctctgctggattactcgtccagttgcaat
tctcttcagtgctagacagtttccaaggatcaaagtcttgggagcactag
atcaggaaatgggagaagcaaggaaaggagaagaggacatgaggggtcgg
agttcctgaaacaagtgtttatttcatagaaggcttggcacatgaggctg
ggatgagcgtggtttcagtgattgttcttggttgcctcttttgctgcagc
aatcagtggagtcaggctagagaggggcttggcaatcttcaggaactgat
gctagaagaagaaaaaaccaaatgagttgagtgtttgccattcttacata
gcagctattaccagacagtaagggcctcagtgacagatcatccttgaatt
gacttgtttatttatccttttgtgtgtgtgtggggggggtgcatccatgc
catgatgtgcatgtgtgtgtaggtccatttgcaagaaggaattcttttca
cgactacaggtacaggaaaattgtcctcaagttgtcagacttggcagcag
gtgctcatacccagtaagttatctcattgaccaagtatacaagttttatt
tgtaagtcattaactgtaagaaaaaaaaaagctcaaaaaattaatagttc
catagtcatatgccattatatagaatattagcacagtaactaacacactg
aaagcacaatggatccacagacattttgagtgaaagaagtaagacaagaa
gttcattttacatggttttgtttgttcctgggtaaaattcacctctggca
acacagagtaactattctttctggagaagacacctatctttcgtctaaac
tccagccctcgacctgttagctggaactataagcatgcaccatatgtggc
taagaatcttttgttcactctttgactccagcaaggcgaattattccagt
aaggactttatgtcctttacatgttacattgtaatgtacttgagcctact
tccaattcaaaagttatttagagaa
gaattctttttttttttttagctctgtaccccattttttaatagaattac
ttgattctctagagtgtaacttcttgagttctatgtatatattggatatt
agccctctctcagatgtagggttggtaaagatctttccccaatctgttgg
ttgttgtttttgtcccattgatagtttcttttgccttacagaaactttgc
aattttatgaggtcccatttgtcaattcttgatcttagagcataagtcat
tggtgttctgttcaggaagttttcccttgtgaccatgtttttaaggctct
tccccactttctcttctattacattcagtatctctggttttatgtgaagg
ttcttgatctacttggacttgagctttgtacagggagataagaatggatc
aatttacatttatctacatgttgattgccagttgaaccagcaccatttgt
tgaaaatgctgtccataggagtgtgggttcatttctgtgtcttcagttct
attccattgatctacttgtctgttgctgtaccaataccatgcagttttta
ttacaattgctctgtagtttgaggtcaggcatggtgattccctcagaggt
tcttttattgttgagaatagttttctctatcctggatttgttgttattcc
acatgaatttgagcattgctctttctaactctatgaagaattgagttgga
attttgatggggattgcattaaatctgcagattgctttcagcaagatggc
catttttactatttaatcctgccaatccttgagcatgagagagctttcca
tcttctgaggtcttcttcgatttcttttatcagagacttgaagttttttt
ttttttttttttaagatttctttatttattatgtgagtacacttttgctg
tctagagacacaccagaagagggcatcagaatcttcattaacagattggt
gtgagccaccatgtggttgctgggatttcacttcatcaaccctctggaat
agcaagtcatgcccttaaacctctgaacccatttctcagccgagacctgg
aactgtttttttttgctctcaagacaggtttcctgatagcccagttgctc
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_105058874_105059906
seq2: B6Ng01-163E10.b_48_1072 (reverse)

seq1  TTCTCTTAAATAATTTTTTAAATTGGAAGTATGGCTCAAAGTACATTACA  50
      ||||| |||||||  |||| ||||||||||| ||||| ||||||||||||
seq2  TTCTC-TAAATAA-CTTTTGAATTGGAAGTA-GGCTC-AAGTACATTACA  46

seq1  ATGTAACATTGTAAAGGACCTTAAAGTCCTTACTGGAATACTTCGCCTTG  100
      |||||||| ||||||||| | ||||||||||||||||||| |||||||||
seq2  ATGTAACA-TGTAAAGGA-CATAAAGTCCTTACTGGAATAATTCGCCTTG  94

seq1  CTGGAGTCAAAGAGTGAACAAAAGATTCTTAGCCACATATGGTGCATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTCAAAGAGTGAACAAAAGATTCTTAGCCACATATGGTGCATGCT  144

seq1  TATAGTTCCAGCTAACAGGTCGAGGGCTGGAGTTTAAGACGAAAGATAGG  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATAGTTCCAGCTAACAGGTCGAGGGCTGGAGTTT-AGACGAAAGATAGG  193

seq1  TGTCTTCTCCAGAAAGAATAGTTACTCTGTTGTTGCCAGAGGTGAATTTT  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTCTTCTCCAGAAAGAATAGTTACTCTG-TGTTGCCAGAGGTGAATTTT  242

seq1  ACCCAGGAACAAACAAAACCATGTAAAATGAACTTCTTGTCTTACTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGAACAAACAAAACCATGTAAAATGAACTTCTTGTCTTACTTCTT  292

seq1  TCACTCAAAATGTCTGTGGATCCATTGTGCTTTCAGTGTGTTAGTTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAAAATGTCTGTGGATCCATTGTGCTTTCAGTGTGTTAGTTACTG  342

seq1  TGCTAATATTCTATATAATGGCATATGACTATGGAACTATTAATTTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATATTCTATATAATGGCATATGACTATGGAACTATTAATTTTTTG  392

seq1  AGCTTTTTTTTTTCTTACAGTTAATGACTTACAAATAAAACTTGTATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTTTTTTCTTACAGTTAATGACTTACAAATAAAACTTGTATACT  442

seq1  TGGTCAATGAGATAACTTACTGGGTATGAGCACCTGCTGCCAAGTCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAATGAGATAACTTACTGGGTATGAGCACCTGCTGCCAAGTCTGAC  492

seq1  AACTTGAGGACAATTTTCCTGTACCTGTAGTCGTGAAAAGAATTCCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAGGACAATTTTCCTGTACCTGTAGTCGTGAAAAGAATTCCTTCT  542

seq1  TGCAAATGGACCTACACACACATGCACATCATGGCATGGATGCACCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGGACCTACACACACATGCACATCATGGCATGGATGCACCCCCC  592

seq1  CCACACACACACAAAAGGATAAATAAACAAGTCAATTCAAGGATGATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACACACAAAAGGATAAATAAACAAGTCAATTCAAGGATGATCTG  642

seq1  TCACTGAGGCCCTTACTGTCTGGTAATAGCTGCTATGTAAGAATGGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGGCCCTTACTGTCTGGTAATAGCTGCTATGTAAGAATGGCAAA  692

seq1  CACTCAACTCATTTGGTTTTTTCTTCTTCTAGCATCAGTTCCTGAAGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAACTCATTTGGTTTTTTCTTCTTCTAGCATCAGTTCCTGAAGATT  742

seq1  GCCAAGCCCCTCTCTAGCCTGACTCCACTGATTGCTGCAGCAAAAGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCCCCTCTCTAGCCTGACTCCACTGATTGCTGCAGCAAAAGAGGC  792

seq1  AACCAAGAACAATCACTGAAACCACGCTCATCCCAGCCTCATGTGCCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGAACAATCACTGAAACCACGCTCATCCCAGCCTCATGTGCCAAG  842

seq1  CCTTCTATGAAATAAACACTTGTTTCAGGAACTCCGACCCCTCATGTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTATGAAATAAACACTTGTTTCAGGAACTCCGACCCCTCATGTCCT  892

seq1  CTTCTCCTTTCCTTGCTTCTCCCATTTCCTGATCTAGTGCTCCCAAGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTTTCCTTGCTTCTCCCATTTCCTGATCTAGTGCTCCCAAGACT  942

seq1  TTGATCCTTGGAAACTGTCTAGCACTGAAGAGAATTGCAACTGGACGAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTTGGAAACTGTCTAGCACTGAAGAGAATTGCAACTGGACGAGT  992

seq1  AATCCAGCAGAGGCCATTTCTAAATAGGAATTC  1033
      |||||||||||||||||||||||||||||||||
seq2  AATCCAGCAGAGGCCATTTCTAAATAGGAATTC  1025