BAC Information

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BAC

Clone NameB6Ng01-165C02
Chromosome7 (Build37)
Map Location 29,386,209 - 29,495,111
singlet/doubletdoublet
Overlap geneC330005M16Rik, Fbxo27
Upstream geneAkt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4
Downstream geneFbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165C02.bB6Ng01-165C02.g
ACCDH957270DH957271
length1,1701,056
definitionDH957270|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C02, 5' end.DH957271|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,386,209 - 29,387,400)(29,494,087 - 29,495,111)
sequence
gaattctaggtgctcgttcattcaccggctgccctctgctgcctccctat
ggtcggggacacacatcgcaagatcatacaagggattcatcactttggcc
tgtattctcaccggtgtttaaacactcttgttgttcacactttggcctgc
attcgaagtattctcaccggtgtttaaacactcttgttgtttttcctctt
tctttatatttgcttgttttgcctgtgtatgactgtgtaccagagtgagg
gggacaaagaaaatgttctctgtttcttctgtgtgattcccaggattgaa
ttcaggccattgagcaagcgcctttacacgctgagctatctccccagccc
ccttaatagattttaaaccgaggtctgacttcaaaacctatgctcacact
ggctcaataaatatatacactgagcactcgctgtgagccaatcacattga
ataatgataatgccaacattgacagagtatgcaatgcggcaggccatgta
acatacactcccttagaatttgcagtagggttctcccaggaagatgtaaa
attaacatctgtctccacgcagggatggtgcatgccaacaaccaatggaa
tgactcacgcacgtttattaggggttatttatggggctgtggagagctac
aaatgactgcaccccctcccaagaacacctcccccccaccccgttcattt
actccccaaatggtacaaatcagggcttagaccgccacctagtgttagaa
cagcaaacttcagggcctgggtaacaaccagactctaggaaaaatttgtg
tttatttcttggcccttaagaaagggtgctgttggtgtcggcagaagctg
tttgagcctgggaaggttggcttgtcttactgcagtctgtcatgaagaac
tgctaaatggtggcttgaaagacaaagttatttcagctaagatttggagg
gctgttatcactgaagtcctcacaaaaatccatatgcactattgatatcc
cattcaaaagcgtgaaataagcacagaaaacgtacatatcccaaatcaca
cagcattctgattcaatgtctaggactctatcacttctggttccctccgg
accactgaaattacctaataaattgaaacatcataaaatgatgagaactg
aagttctgtgcgttcaaata
gaattcaattaaaatataattacataatttccctctcctcccatgtatcc
tttccccttctcatgcccaagttcacggtccctctcttttttcaccattg
cccttacatagccatataaatccaacctgctgagtccattctaagttgct
gcatgcatatgcatccagggctgaccattgcaattggtaatcaatcagga
ggatcctctcccatcccccaacctccccagggaaagcgaattctccctct
ctcgccagcccttaattacctgtagctcttgatctgggagtttgtgagat
ttcccccatctactgtgggataccaactggtgttggaactggtaaggtct
tgtttaggcagccatgctgttgagctatcctgggtgtagcttctctgtca
cagcaagaagaaacaatgccacagctgacttcctggtcctttcactatta
gtctttctgcttcctcttccaggctgtggcctcagtcttaggtgtgggag
ctgtgttgtaattgtatctattggagctgtgttgtagtgttgtaattgtg
ctatgtaatgagttgttttaaacatttgacaacaatgtggctttctgtct
agctatctctgtctctcttcttcttcttcttttcttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttctccttcttcttctccttcttctcctcctcctcctcctcctt
cttcttctccttcttcatttttttgagacagggtttctctgtgtagccca
ggctggcctcgaactcagaaatccgtctgcctctgcttcctgaatgctag
gattaaacgtgtgcaccaccactgcctggctttctctttcttctttattt
cttttctttttttcttttttgatacagggtataacaatacagctctggct
ggcctgaactcacagaaatcttccctctctcagcttcctgttctggaatt
aaagatgtgtactacggtgcctaggtgagtgtttgtttgttttgtttggt
ttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_29386209_29387400
seq2: B6Ng01-165C02.b_41_1210

seq1  GAATTCTAGGTGCTCGTTCATTCACCGGCTGCCCTCTGCTGCCTCCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTGCTCGTTCATTCACCGGCTGCCCTCTGCTGCCTCCCTAT  50

seq1  GGTCGGGGACACACATCGCAAGATCATACAAGGGATTCATCACTTTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGGGACACACATCGCAAGATCATACAAGGGATTCATCACTTTGGCC  100

seq1  TGTATTCTCACCGGTGTTTAAACACTCTTGTTGTTCACACTTTGGCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTCACCGGTGTTTAAACACTCTTGTTGTTCACACTTTGGCCTGC  150

seq1  ATTCGAAGTATTCTCACCGGTGTTTAAACACTCTTGTTGTTTTTCCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGAAGTATTCTCACCGGTGTTTAAACACTCTTGTTGTTTTTCCTCTT  200

seq1  TCTTTATATTTGCTTGTTTTGCCTGTGTATGACTGTGTACCAGAGTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATATTTGCTTGTTTTGCCTGTGTATGACTGTGTACCAGAGTGAGG  250

seq1  GGGACAAAGAAAATGTTCTCTGTTTCTTCTGTGTGATTCCCAGGATTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAAGAAAATGTTCTCTGTTTCTTCTGTGTGATTCCCAGGATTGAA  300

seq1  TTCAGGCCATTGAGCAAGCGCCTTTACACGCTGAGCTATCTCCCCAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCCATTGAGCAAGCGCCTTTACACGCTGAGCTATCTCCCCAGCCC  350

seq1  CCTTAATAGATTTTAAACCGAGGTCTGACTTCAAAACCTATGCTCACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATAGATTTTAAACCGAGGTCTGACTTCAAAACCTATGCTCACACT  400

seq1  GGCTCAATAAATATATACACTGAGCACTCGCTGTGAGCCAATCACATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAATAAATATATACACTGAGCACTCGCTGTGAGCCAATCACATTGA  450

seq1  ATAATGATAATGCCAACATTGACAGAGTATGCAATGCGGCAGGCCATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGATAATGCCAACATTGACAGAGTATGCAATGCGGCAGGCCATGTA  500

seq1  ACATACACTCCCTTAGAATTTGCAGTAGGGTTCTCCCAGGAAGATGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACTCCCTTAGAATTTGCAGTAGGGTTCTCCCAGGAAGATGTAAA  550

seq1  ATTAACATCTGTCTCCACGCAGGGATGGTGCATGCCAACAACCAATGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATCTGTCTCCACGCAGGGATGGTGCATGCCAACAACCAATGGAA  600

seq1  TGACTCACGCACGTTTATTAGGGGTTATTTATGGGGCTGTGGAGAGCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCACGCACGTTTATTAGGGGTTATTTATGGGGCTGTGGAGAGCTAC  650

seq1  AAATGACTGCACCCCCTCCCAAGAACACCTCCCCCCCACCCCGTTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTGCACCCCCTCCCAAGAACACCTCCCCCCCACCCCGTTCATTT  700

seq1  ACTCCCCAAATGGTACAAATCAGGGCTTAGACCGCCACCTAGTGTTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCAAATGGTACAAATCAGGGCTTAGACCGCCACCTAGTGTTAGAA  750

seq1  CAGCAAACTTCAGGGCCTGGGTAACAACCAGACTCTAGGAAAAATTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACTTCAGGGCCTGGGTAACAACCAGACTCTAGGAAAAATTTGTG  800

seq1  TTTATTTCTTGGCCCTTAAGAAAGGGTGCTGTTGGTGTCGGCAGAAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTTGGCCCTTAAGAAAGGGTGCTGTTGGTGTCGGCAGAAGCTG  850

seq1  TTTGAGCCTGGGAAGGTTGGCTTGTCTTACTGCAGTCTGTCATGAAGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCCTGGGAAGGTTGGCTTGTCTTACTGCAGTCTGTCATGAAGAAC  900

seq1  TGCTAAATGGTGGCTTGAAAGACAAAGTTATTTCAGCTAAGATTTGGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATGGTGGCTTGAAAGACAAAGTTATTTCAGCTAAGATTTGGAGG  950

seq1  GCTGTTATCACTGAAGTCCTCACAAAAATCCATATGCACTATTGATATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCTGTTATCACTGAAGTCCTCACAAAAATCCATATGCACTATTGATA-TC  999

seq1  CCATTCAAAAGGCGTGAAAATTAAGGCACAGAAAACGTACATAATCCCCA  1050
      |||||||||| ||||||||  ||| ||||||||||||||||||   ||||
seq2  CCATTCAAAA-GCGTGAAA--TAA-GCACAGAAAACGTACATA--TCCCA  1043

seq1  AATCACACAGGCATTCTGATTTCAAATGTCTAGACTTCTAATCACTTCTG  1100
      ||||||||| |||||||||||   |||||||||   ||| ||||||||||
seq2  AATCACACA-GCATTCTGATT--CAATGTCTAGGACTCT-ATCACTTCTG  1089

seq1  GTCCCCTCCCGACCACCGGAAAAATAACATAAATAAAATTTAAAAACATA  1150
      || |||||| |||||| |   |||| || | ||||||   |  |||||| 
seq2  GTTCCCTCCGGACCACTG---AAATTACCT-AATAAA---TTGAAACAT-  1131

seq1  AAATAAAATGATGAGGACTAGAAAGTTCTGTGCTGTCAAATA  1192
        ||||||||||||| |||   |||||||||||  |||||||
seq2  -CATAAAATGATGAGAACT--GAAGTTCTGTGCGTTCAAATA  1170

seq1: chr7_29494087_29495111
seq2: B6Ng01-165C02.g_102_1124 (reverse)

seq1  AAACAAAACAAAACAAAACAAAACAAAACAC-CACCTAGGCACTGTAGTA  49
      |||| |||| ||||||||||||   |||||| ||||||||||| ||||||
seq2  AAAC-AAACCAAACAAAACAAA--CAAACACTCACCTAGGCACCGTAGTA  47

seq1  CACATCTTTAATTCCAGAACAGGAAGCTGAGAGA-GGAAGATTTCTGTGA  98
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACATCTTTAATTCCAGAACAGGAAGCTGAGAGAGGGAAGATTTCTGTGA  97

seq1  GTTCCAGGCCAGCCAGAGCTGTATTGTTATACCCTGTATCAAAAAAGAAA  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTT-CAGGCCAGCCAGAGCTGTATTGTTATACCCTGTATCAAAAAAGAAA  146

seq1  AAAAGAAAAGAAATAAAGAAGAAAGAGAAAGCCAGGCAGTGGTGGTGCAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAAATAAAGAAGAAAGAGAAAGCCAGGCAGTGGTGGTGCAC  196

seq1  ACGTTTAATCCTAGCATTCAGGAAGCAGAGGCAGACGGATTTCTGAGTTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTAATCCTAGCATTCAGGAAGCAGAGGCAGACGGATTTCTGAGTTC  246

seq1  GAGGCCAGCCTGGGCTACACAGAGAAACCCTGTCTCAAAAAAATGAAGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGGGCTACACAGAGAAACCCTGTCTCAAAAAAATGAAGAA  296

seq1  GGAGAAGAAGAAGGAGGAGGAGGAGGAGGAGAAGAAGGAGAAGAAGAAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAAGAAGGAGGAGGAGGAGGAGGAGAAGAAGGAGAAGAAGAAGG  346

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  396

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGAAGAAGAAGAAGAGAGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGAAGAAGAAGAAGAGAGAC  446

seq1  AGAGATAGCTAGACAGAAAGCCACATTGTTGTCAAATGTTTAAAACAACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGCTAGACAGAAAGCCACATTGTTGTCAAATGTTTAAAACAACT  496

seq1  CATTACATAGCACAATTACAACACTACAACACAGCTCCAATAGATACAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATAGCACAATTACAACACTACAACACAGCTCCAATAGATACAAT  546

seq1  TACAACACAGCTCCCACACCTAAGACTGAGGCCACAGCCTGGAAGAGGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACACAGCTCCCACACCTAAGACTGAGGCCACAGCCTGGAAGAGGAA  596

seq1  GCAGAAAGACTAATAGTGAAAGGACCAGGAAGTCAGCTGTGGCATTGTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGACTAATAGTGAAAGGACCAGGAAGTCAGCTGTGGCATTGTTT  646

seq1  CTTCTTGCTGTGACAGAGAAGCTACACCCAGGATAGCTCAACAGCATGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCTGTGACAGAGAAGCTACACCCAGGATAGCTCAACAGCATGGC  696

seq1  TGCCTAAACAAGACCTTACCAGTTCCAACACCAGTTGGTATCCCACAGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAACAAGACCTTACCAGTTCCAACACCAGTTGGTATCCCACAGTA  746

seq1  GATGGGGGAAATCTCACAAACTCCCAGATCAAGAGCTACAGGTAATTAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGGAAATCTCACAAACTCCCAGATCAAGAGCTACAGGTAATTAAG  796

seq1  GGCTGGCGAGAGAGGGAGAATTCGCTTTCCCTGGGGAGGTTGGGGGATGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCGAGAGAGGGAGAATTCGCTTTCCCTGGGGAGGTTGGGGGATGG  846

seq1  GAGAGGATCCTCCTGATTGATTACCAATTGCAATGGTCAGCCCTGGATGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGATCCTCCTGATTGATTACCAATTGCAATGGTCAGCCCTGGATGC  896

seq1  ATATGCATGCAGCAACTTAGAATGGACTCAGCAGGTTGGATTTATATGGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATGCAGCAACTTAGAATGGACTCAGCAGGTTGGATTTATATGGC  946

seq1  TATGTAAGGGCAATGGTGAAAAAAGAGAGGGACCGTGAACTTGGGCATGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGGGCAATGGTGAAAAAAGAGAGGGACCGTGAACTTGGGCATGA  996

seq1  GAAGGGGAAAGGATACATGGGAGGAGA  1025
      |||||||||||||||||||||||||||
seq2  GAAGGGGAAAGGATACATGGGAGGAGA  1023