BAC Information

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BAC

Clone NameB6Ng01-165N11
Chromosome7 (Build37)
Map Location 127,834,791 - 127,997,485
singlet/doubletdoublet
Overlap geneBC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k
Upstream geneBC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik
Downstream genePolr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2, Usp31, Scnn1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165N11.bB6Ng01-165N11.g
ACCDH957788DH957789
length6231,120
definitionDH957788|Mus musculus domesticus DNA, BAC clone: B6Ng01-165N11, 5' end.DH957789|Mus musculus domesticus DNA, BAC clone: B6Ng01-165N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,996,863 - 127,997,485)(127,834,791 - 127,835,598)
sequence
gaattcaatcgttagaattgactcctccaattgtcctctgaccaccacaa
actcaccacggtgcgcatgtttcccctctccccgccacacacacacacac
acacacacacacactttttttgttttttgttttttgttttttgagacagg
gtttctctgtatagccctggctgtcctggaactctctgtagaccaggctg
gcctcgaactcagaaatccgcctgcctctgctgggattaaaagcgtgcgc
caccacgcccggctgaacacacacaatttaaaaagtcaagttttacaatt
tttataaaatgttcatagcaccattcttgtctgttctttcgagacagggt
ttctctgtgtagtcctggctgtcctggaactctctgtagcccaggctggt
ctcgaactcagagatccaactgcctctgcttcctgagtgctgggattaaa
cgtgtttaaccatcatattcttaacgagtatccatcaagcgatgaggaga
tttaaaaaaaaacaaggtacagtcacaccaggcagaagtgtgcagagtga
gttacagcacagctagggctgttacacacagacagaaaccatgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtg
gaattctttagtatgcatatagttttactgcataacactgtataacaaag
acaaagcaaatttatatattgatgagaaggataggcttctttaatttaca
taaaggttcagtctcagctgaatatttgctactgcaaggcatagagcatc
atcaacatttttcagctgatcaatattttgatttgatgattgtcagtgct
gagaatgctacttcacataaatacatagtacaaaatagcagaaatcgatt
taaggccatgtcaggaatggcgggcagttctgtcctaatcccaagccaaa
atcatttaatgaattttctttaatgaaactgaagtcagcacctcaaaata
gtttttaaaaatcaaacattcttgcacagtataatcaaaagataacttaa
tttgataaatgctaaagaatgctaacaggaaaacactacaataaaaactg
tagttcacaacctagaggagtctcaggcctgagctggggtgtctcaggca
gtgttcttttgctttacatggaaagcctgcattcagttcactgcaaaatg
caagtgtgtgtagagccaagggtgcagtgagttcacacagcacacgggcc
agcaggggtagaaacgtctcagctttgttatggcgattttgcattggttt
ctgtttacttcattttcagaaaccttttactgctggtcattggtgccata
gatttaactccagctcttaagaggcagaggcaggtggatcttagtcaggt
ctacagagggagttccaggacagcagacttccagagaaaccctgtcttgg
aaaaaactaaaaaaaaaagaaggggtgggggactgtagagatggctcaga
agttaagagtacttactgactgctcttccagaggtcctgagttcaattcc
cagcaaccacatggtggctcacaccatctgtaatgggattctgatgccct
cttctgttgtgtctgaagacacctacatggcactcatataaattgaaaag
aagaaatgtcttgagtttgggcttttcatgtactgcgagcctgttgtagg
agggactgctacctactgaggttgtattttttgaaatttctctttgtccc
ttgcgatatcccattaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_127996863_127997485
seq2: B6Ng01-165N11.b_46_668 (reverse)

seq1  CACACACACACACACACACACACACACACACATGGTTTCTGTCTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACATGGTTTCTGTCTGTGTGT  50

seq1  AACAGCCCTAGCTGTGCTGTAACTCACTCTGCACACTTCTGCCTGGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCCTAGCTGTGCTGTAACTCACTCTGCACACTTCTGCCTGGTGTG  100

seq1  ACTGTACCTTGTTTTTTTTTAAATCTCCTCATCGCTTGATGGATACTCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACCTTGTTTTTTTTTAAATCTCCTCATCGCTTGATGGATACTCGT  150

seq1  TAAGAATATGATGGTTAAACACGTTTAATCCCAGCACTCAGGAAGCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATATGATGGTTAAACACGTTTAATCCCAGCACTCAGGAAGCAGAG  200

seq1  GCAGTTGGATCTCTGAGTTCGAGACCAGCCTGGGCTACAGAGAGTTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGGATCTCTGAGTTCGAGACCAGCCTGGGCTACAGAGAGTTCCAG  250

seq1  GACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAGAACAGACAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAGAACAGACAAGAA  300

seq1  TGGTGCTATGAACATTTTATAAAAATTGTAAAACTTGACTTTTTAAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTATGAACATTTTATAAAAATTGTAAAACTTGACTTTTTAAATTG  350

seq1  TGTGTGTTCAGCCGGGCGTGGTGGCGCACGCTTTTAATCCCAGCAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTCAGCCGGGCGTGGTGGCGCACGCTTTTAATCCCAGCAGAGGC  400

seq1  AGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGAGTTCCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGAGTTCCAGGA  450

seq1  CAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACAAAAAACAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACAAAAAACAAAAA  500

seq1  ACAAAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCGGGGAGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCGGGGAGAGGG  550

seq1  GAAACATGCGCACCGTGGTGAGTTTGTGGTGGTCAGAGGACAATTGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGCGCACCGTGGTGAGTTTGTGGTGGTCAGAGGACAATTGGAGG  600

seq1  AGTCAATTCTAACGATTGAATTC  623
      |||||||||||||||||||||||
seq2  AGTCAATTCTAACGATTGAATTC  623

seq1: chr7_127834791_127835598
seq2: B6Ng01-165N11.g_382_1189

seq1  ATTTTCTTTAATGAAACTGAAGTCAGCACCTCAAAATAGTTTTTAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTAATGAAACTGAAGTCAGCACCTCAAAATAGTTTTTAAAAAT  50

seq1  CAAACATTCTTGCACAGTATAATCAAAAGATAACTTAATTTGATAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTCTTGCACAGTATAATCAAAAGATAACTTAATTTGATAAATGC  100

seq1  TAAAGAATGCTAACAGGAAAACACTACAATAAAAACTGTAGTTCACAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATGCTAACAGGAAAACACTACAATAAAAACTGTAGTTCACAACC  150

seq1  TAGAGGAGTCTCAGGCCTGAGCTGGGGTGTCTCAGGCAGTGTTCTTTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGTCTCAGGCCTGAGCTGGGGTGTCTCAGGCAGTGTTCTTTTGC  200

seq1  TTTACATGGAAAGCCTGCATTCAGTTCACTGCAAAATGCAAGTGTGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGGAAAGCCTGCATTCAGTTCACTGCAAAATGCAAGTGTGTGTA  250

seq1  GAGCCAAGGGTGCAGTGAGTTCACACAGCACACGGGCCAGCAGGGGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGGGTGCAGTGAGTTCACACAGCACACGGGCCAGCAGGGGTAGA  300

seq1  AACGTCTCAGCTTTGTTATGGCGATTTTGCATTGGTTTCTGTTTACTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCTCAGCTTTGTTATGGCGATTTTGCATTGGTTTCTGTTTACTTCA  350

seq1  TTTTCAGAAACCTTTTACTGCTGGTCATTGGTGCCATAGATTTAACTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAAACCTTTTACTGCTGGTCATTGGTGCCATAGATTTAACTCCA  400

seq1  GCTCTTAAGAGGCAGAGGCAGGTGGATCTTAGTCAGGTCTACAGAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAAGAGGCAGAGGCAGGTGGATCTTAGTCAGGTCTACAGAGGGAG  450

seq1  TTCCAGGACAGCAGACTTCCAGAGAAACCCTGTCTTGGAAAAAACTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGCAGACTTCCAGAGAAACCCTGTCTTGGAAAAAACTAAAA  500

seq1  AAAAAAGAAGGGGTGGGGGACTGTAGAGATGGCTCAGAAGTTAAGAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAGGGGTGGGGGACTGTAGAGATGGCTCAGAAGTTAAGAGTAC  550

seq1  TTACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACAT  600

seq1  GGTGGCTCACAACCATCTGTAATGGGA-TCTGATGCCCTCTTCTGGTGTG  649
      |||||||||| |||||||||||||||| ||||||||||||||||| ||||
seq2  GGTGGCTCAC-ACCATCTGTAATGGGATTCTGATGCCCTCTTCTGTTGTG  649

seq1  TCTGAAGACACCTACAATGCACTCATATAAA-TGAAAAGAAAGAAATGTC  698
      ||||||||||||||||  ||||||||||||| ||||||| ||||||||||
seq2  TCTGAAGACACCTACATGGCACTCATATAAATTGAAAAG-AAGAAATGTC  698

seq1  -TGAGTTTGGGCTTTCATTGTACTGCAGAG-CTGTTGTAGGA-GGACTGC  745
       ||||||||||||||   |||||||| ||| ||||||||||| |||||||
seq2  TTGAGTTTGGGCTTTTCATGTACTGC-GAGCCTGTTGTAGGAGGGACTGC  747

seq1  TACCTACAGAGGTTGGTATTTTTTTGAAATTCTTTTTGTCCTTAGGCAAT  795
      ||||||| |||||| |||||||||  || |||| ||||||| |  || ||
seq2  TACCTACTGAGGTT-GTATTTTTTGAAATTTCTCTTTGTCCCT-TGCGAT  795

seq1  ATCCCATTAAGGG  808
      |||||||||||||
seq2  ATCCCATTAAGGG  808