BAC Information

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BAC

Clone NameB6Ng01-166J12
Chromosome7 (Build37)
Map Location 129,165,360 - 129,302,987
singlet/doubletdoublet
Overlap geneEars2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1
Upstream geneMettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2, Usp31, Scnn1g, Scnn1b, Cog7, Gga2
Downstream geneErn2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166J12.bB6Ng01-166J12.g
ACCDH958328DH958329
length1,2061,161
definitionDH958328|Mus musculus domesticus DNA, BAC clone: B6Ng01-166J12, 5' end.DH958329|Mus musculus domesticus DNA, BAC clone: B6Ng01-166J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,165,360 - 129,166,560)(129,301,798 - 129,302,987)
sequence
gaattcttggtcatcctgccactgtggtacaaacttgattacaagaatgt
actaccagtacagctttgttgttatggtttttgtttttgcttttgagaaa
gggtttctcatactcattagtccaagatggcctttgaatgataaaagcta
agatcctaaaaacctgtagtaaaatccttttgcctcaacctcccaaaagc
tggaactacaggtgtgagctaccatgccagcctaacatgaaatattttcc
tttatttaactcttgaacttaaatgaaggaatcaagtagatgttgtatta
atatgtccacaagaaaagccaaagagaaaaatctatgtaaaaataaagga
ctgttgagacaaacatgcaaatgggcataagactggctccagccagtgga
gaaagaggtctgtccagtggacaggattaatatgcatgtctagaggccag
cataattttgccattgctgtcaatgatctactactaacaactctgctaag
actgaaggaggccttagcctggaaggcagtcaagactgcgcacgaggtcc
ctctgaagcaccagatccttccacactgtccctatcattccccaccctca
atgtcacaccccagtacatacacacacacacacacacacagaaggatttt
aatttgcatagacctggaccaccagcataccaaatggggcttggcatacc
agtaagtatctgttgaatggacacataaatagtggggacagtcaggggta
actctaggactttaggcatatcataatcccaaatgtacaaacattttttt
aagtttttatttgtatgtgtgttttgcctgcatatatatctatgcaccac
atgcaagcctggagcctgaagaggccagagagtgtgtcagattccctgca
actggaattgtagacagtcctgagctgccatgtgggtgctaggaattgaa
cctgggtcctccaaaagagcaatacatactcttgaccactgagcaacctc
tacagccctacttttaatcttttaaacactatgcatatgtatgtgcatat
gtgtgatatgcatgtccgtacaggcacacgcatgccacattgtgctttat
gagcacagagaaacagttaatcgaattggttctccctcccaccttaggtg
cctttctcaagaatgggaggtcaatattcattaatgcttatatggcaata
cacttt
gaattcaaacgcggcgctgggaacgttacaagggcctgcgcgttgctgat
tggccgcggggatttaaaatacaaacccgcccagcgcgcggcaccatggg
agtgctctacggcgcagccgcctttaaactccgatcttgccggcgaaatt
tttaatgggcagggactggaggactgcgtttgctcaggattgcctgggaa
accaggaacgaagcaactacgtgaagatccctagaagaacaggattctgt
cctgctttctgctcctcggctggggcgtgctcatgtggttcacctgcgcc
tcctccaggggcttctcctaactgttaagatctaacaccttcctccaccg
gacccggccttctagaactgaaactccaggccaaccggtagcttgagagt
gcaccgcctccgcggtggacagccctctccccggctagcctaaataaacc
caaaactgagcaagctcagcaggcagatgcaccttcacggcgcaacggac
cgatctcctctgtggcactaggggctcccagcccctgagaagtaactcaa
cccttctcttgaacaacgcaggaggccagcagcatctgcagcacctggaa
ttccctaagaaggcaaaggaggggcgtgggttcaggattacaagttagcc
gagatcagcctcagctaccgctccactaaccccaaaggaaagaaacttcc
caggcatgacctgccggtcaaacaagaccttcagatgattcctatgccct
gtgatatgtaagaaacaccggacgtctgccccgcgatgcaaggttacctg
ggttgttccaagttgtgtggcccagagccccaaatagaaaaaattaattt
tttagtcagaggtgggggggtagctggttagagagtgctagcatgcccgt
ataccaagccaagtctgccctgccgaagtgtccgttcagccttcacttag
gaaaaaaaaaatgagccgggcgtaatggcacactctttatcccagcactt
ggggagcaggcgatttctgagtcagccagctgtctacaaaggtgagttca
ggacagcagagctatacagagaaccctgttctcgaaaaaaaaatggaatt
tccacatgtaaagaagtggcacacaagacaggcgtgtgctttccaagaaa
cgccagctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_129165360_129166560
seq2: B6Ng01-166J12.b_45_1250

seq1  GAATTCTTGGTCATCCTGCCACTGTGGTACAAACTTGATTACAAGAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTCATCCTGCCACTGTGGTACAAACTTGATTACAAGAATGT  50

seq1  ACTACCAGTACAGCTTTGTTGTTATGGTTTTTGTTTTTGCTTTTGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCAGTACAGCTTTGTTGTTATGGTTTTTGTTTTTGCTTTTGAGAAA  100

seq1  GGGTTTCTCATACTCATTAGTCCAAGATGGCCTTTGAATGATAAAAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTCATACTCATTAGTCCAAGATGGCCTTTGAATGATAAAAGCTA  150

seq1  AGATCCTAAAAACCTGTAGTAAAATCCTTTTGCCTCAACCTCCCAAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTAAAAACCTGTAGTAAAATCCTTTTGCCTCAACCTCCCAAAAGC  200

seq1  TGGAACTACAGGTGTGAGCTACCATGCCAGCCTAACATGAAATATTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTACAGGTGTGAGCTACCATGCCAGCCTAACATGAAATATTTTCC  250

seq1  TTTATTTAACTCTTGAACTTAAATGAAGGAATCAAGTAGATGTTGTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAACTCTTGAACTTAAATGAAGGAATCAAGTAGATGTTGTATTA  300

seq1  ATATGTCCACAAGAAAAGCCAAAGAGAAAAATCTATGTAAAAATAAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCCACAAGAAAAGCCAAAGAGAAAAATCTATGTAAAAATAAAGGA  350

seq1  CTGTTGAGACAAACATGCAAATGGGCATAAGACTGGCTCCAGCCAGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGACAAACATGCAAATGGGCATAAGACTGGCTCCAGCCAGTGGA  400

seq1  GAAAGAGGTCTGTCCAGTGGACAGGATTAATATGCATGTCTAGAGGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGTCTGTCCAGTGGACAGGATTAATATGCATGTCTAGAGGCCAG  450

seq1  CATAATTTTGCCATTGCTGTCAATGATCTACTACTAACAACTCTGCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTGCCATTGCTGTCAATGATCTACTACTAACAACTCTGCTAAG  500

seq1  ACTGAAGGAGGCCTTAGCCTGGAAGGCAGTCAAGACTGCGCACGAGGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGAGGCCTTAGCCTGGAAGGCAGTCAAGACTGCGCACGAGGTCC  550

seq1  CTCTGAAGCACCAGATCCTTCCACACTGTCCCTATCATTCCCCACCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGCACCAGATCCTTCCACACTGTCCCTATCATTCCCCACCCTCA  600

seq1  ATGTCACACCCCAGTACATACACACACACACACACACACAGAAGGATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACACCCCAGTACATACACACACACACACACACACAGAAGGATTTT  650

seq1  AATTTGCATAGACCTGGACCACCAGCATACCAAATGGGGCTTGGCATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCATAGACCTGGACCACCAGCATACCAAATGGGGCTTGGCATACC  700

seq1  AGTAAGTATCTGTTGAATGGACACATAAATAGTGGGGACAGTCAGGGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTATCTGTTGAATGGACACATAAATAGTGGGGACAGTCAGGGGTA  750

seq1  ACTCTAGGACTTTAGGCATATCATAATCCCAAATGTACAAACATTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGGACTTTAGGCATATCATAATCCCAAATGTACAAACATTTTTTT  800

seq1  AAGTTTTTATTTGTATGTGTGTTTTGCCTGCATATATATCTATGCACCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTATTTGTATGTGTGTTTTGCCTGCATATATATCTATGCACCAC  850

seq1  ATGCAAGCCTGGAGCCTGAAGAGGCCAGAGAGTGTGTCAGATTCCCTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGCCTGGAGCCTGAAGAGGCCAGAGAGTGTGTCAGATTCCCTGCA  900

seq1  ACTGGAATTGTAGACAGTCCTGAGCTGCCATGTGGGTGCTAGGAATTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAATTGTAGACAGTCCTGAGCTGCCATGTGGGTGCTAGGAATTGAA  950

seq1  CCTGGGTCCTCCAAAAGAGCAATACATACTCTTGACCACTGAGCAACCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCCTCCAAAAGAGCAATACATACTCTTGACCACTGAGCAACCTC  1000

seq1  TACAGCCCTACTTTTAATCTTTTAAACACTATGCATATGTATGTGCATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCCTACTTTTAATCTTTTAAACACTATGCATATGTATGTGCATAT  1050

seq1  GTGTGATATGCATGTCGGTACAGGCACACGCATGCCACAGTGTGCTTATG  1100
      |||||||||||||||| |||||||||||||||||||||| |||||||   
seq2  GTGTGATATGCATGTCCGTACAGGCACACGCATGCCACATTGTGCTTTAT  1100

seq1  GAGCACAGAG-AACAGTTTTATCGAATTGGTTTTCTCCTCCCACCCTTAG  1149
      |||||||||| ||||| || |||||||||||| || ||||||| ||||||
seq2  GAGCACAGAGAAACAG-TTAATCGAATTGGTTCTC-CCTCCCA-CCTTAG  1147

seq1  GTGCC-TTCTCAAGA--TGGAAGTC-ATA-TCATT-ATGCTTATATGGCA  1193
      ||||| |||||||||   ||| ||| ||| ||||| ||||||||||||||
seq2  GTGCCTTTCTCAAGAATGGGAGGTCAATATTCATTAATGCTTATATGGCA  1197

seq1  AT-CACTTT  1201
      || ||||||
seq2  ATACACTTT  1206

seq1: chr7_129301798_129302987
seq2: B6Ng01-166J12.g_69_1229 (reverse)

seq1  CAGAGCTGGCCGTTTTTTTCTATGAAAAGCCACACGCCTGCTCTGTGTGG  50
      ||||||||||      ||||| || |||| ||||||||||   ||||| |
seq2  CAGAGCTGGC-----GTTTCT-TGGAAAG-CACACGCCTGTCTTGTGT-G  42

seq1  CCACTCTTTTTACATGTTGTAAATCCATTTTTTTTTTTTTTTCGAG-ACA  99
      ||||| | ||||||||| | || ||||      ||||||||||||| |||
seq2  CCACT-TCTTTACATGTGGAAATTCCA------TTTTTTTTTCGAGAACA  85

seq1  GGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCA-CTTTGTAGACCA  148
      ||| |||||||||||||||| |||||||| ||||||| ||||||||||  
seq2  GGG-TTCTCTGTATAGCTCT-GCTGTCCT-GAACTCACCTTTGTAGAC--  130

seq1  GGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCCCCAGTGCTGGGATTAA  198
       ||||||  || |||||||||| |||||||  ||| |||||||||||  |
seq2  AGCTGGC--TG-ACTCAGAAAT-CGCCTGCTCCCCAAGTGCTGGGAT--A  174

seq1  AGGTGTGTGCCATTACGCCCCGGCTCATTTTTTTTTTTTCCTAAGTGAAG  248
      | | ||||||||||||| |||||||||  |||||||||||||||||||||
seq2  AAGAGTGTGCCATTACG-CCCGGCTCA--TTTTTTTTTTCCTAAGTGAAG  221

seq1  GCTGAACGGACACTTCGGCAGGGCAGACTTGGCCTTGGTATACCGGCATG  298
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  GCTGAACGGACACTTCGGCAGGGCAGACTTGG-CTTGGTATACGGGCATG  270

seq1  CTAGCACTCTTCTAACCAGCTACCCCCCCACCTCTGACTAAAAAATTAAT  348
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTC-TCTAACCAGCTACCCCCCCACCTCTGACTAAAAAATTAAT  319

seq1  TTTTTCTATTTGGGGCTCTGGGCCACACAACTTGGAACAACCCAGGTAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTATTTGGGGCTCTGGGCCACACAACTTGGAACAACCCAGGTAAC  369

seq1  CTTGCATCGCGGGGCAGACGTCCGGTGTTTCTTACATATCACAGGGCATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATCGCGGGGCAGACGTCCGGTGTTTCTTACATATCACAGGGCATA  419

seq1  GGAATCATCTGAAGGTCTTGTTTGACCGGCAGGTCATGCCTGGGAAGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCATCTGAAGGTCTTGTTTGACCGGCAGGTCATGCCTGGGAAGTTT  469

seq1  CTTTCCTTTGGGGTTAGTGGAGCGGTAGCTGAGGCTGATCTCGGCTAACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTGGGGTTAGTGGAGCGGTAGCTGAGGCTGATCTCGGCTAACT  519

seq1  TGTAATCCTGAACCCACGCCCCTCCTTTGCCTTCTTAGGGAATTCCAGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCTGAACCCACGCCCCTCCTTTGCCTTCTTAGGGAATTCCAGGT  569

seq1  GCTGCAGATGCTGCTGGCCTCCTGCGTTGTTCAAGAGAAGGGTTGAGTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGATGCTGCTGGCCTCCTGCGTTGTTCAAGAGAAGGGTTGAGTTA  619

seq1  CTTCTCAGGGGCTGGGAGCCCCTAGTGCCACAGAGGAGATCGGTCCGTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGGGGCTGGGAGCCCCTAGTGCCACAGAGGAGATCGGTCCGTTG  669

seq1  CGCCGTGAAGGTGCATCTGCCTGCTGAGCTTGCTCAGTTTTGGGTTTATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGTGAAGGTGCATCTGCCTGCTGAGCTTGCTCAGTTTTGGGTTTATT  719

seq1  TAGGCTAGCCGGGGAGAGGGCTGTCCACCGCGGAGGCGGTGCACTCTCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAGCCGGGGAGAGGGCTGTCCACCGCGGAGGCGGTGCACTCTCAA  769

seq1  GCTACCGGTTGGCCTGGAGTTTCAGTTCTAGAAGGCCGGGTCCGGTGGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCGGTTGGCCTGGAGTTTCAGTTCTAGAAGGCCGGGTCCGGTGGAG  819

seq1  GAAGGTGTTAGATCTTAACAGTTAGGAGAAGCCCCTGGAGGAGGCGCAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTTAGATCTTAACAGTTAGGAGAAGCCCCTGGAGGAGGCGCAGG  869

seq1  TGAACCACATGAGCACGCCCCAGCCGAGGAGCAGAAAGCAGGACAGAATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACATGAGCACGCCCCAGCCGAGGAGCAGAAAGCAGGACAGAATC  919

seq1  CTGTTCTTCTAGGGATCTTCACGTAGTTGCTTCGTTCCTGGTTTCCCAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCTAGGGATCTTCACGTAGTTGCTTCGTTCCTGGTTTCCCAGG  969

seq1  CAATCCTGAGCAAACGCAGTCCTCCAGTCCCTGCCCATTAAAAATTTCGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTGAGCAAACGCAGTCCTCCAGTCCCTGCCCATTAAAAATTTCGC  1019

seq1  CGGCAAGATCGGAGTTTAAAGGCGGCTGCGCCGTAGAGCACTCCCATGGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAAGATCGGAGTTTAAAGGCGGCTGCGCCGTAGAGCACTCCCATGGT  1069

seq1  GCCGCGCGCTGGGCGGGTTTGTATTTTAAATCCCCGCGGCCAATCAGCAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCGCGCTGGGCGGGTTTGTATTTTAAATCCCCGCGGCCAATCAGCAA  1119

seq1  CGCGCAGGCCCTTGTAACGTTCCCAGCGCCGCGTTTGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCAGGCCCTTGTAACGTTCCCAGCGCCGCGTTTGAATTC  1161