BAC Information

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BAC

Clone NameB6Ng01-168N08
Chromosome7 (Build37)
Map Location 13,665,140 - 13,690,524
singlet/doubletdoublet
Overlap geneV1rj3, LOC100043156
Upstream geneLOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1
Downstream geneV1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168N08.bB6Ng01-168N08.g
ACCDH959971DH959972
length1,0921,147
definitionDH959971|Mus musculus domesticus DNA, BAC clone: B6Ng01-168N08, 5' end.DH959972|Mus musculus domesticus DNA, BAC clone: B6Ng01-168N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,665,140 - 13,666,230)(13,689,355 - 13,690,524)
sequence
gaattcctgggcaatagccgggcgtggtggcgcacgcctttaatcccagc
acttgggaggcagaggcaggtgaatttctgagttcgaggccagcctggtc
tacagagtgagttccaggacagccagggctacacagagaaaccctgtctc
aaaaaaaaaaaaaaagaattcctgggcaatgaatggccaacacaccaaat
gtaagactctggcaagccttaacttactggagatcccctgagtaaataac
ttgaagtaggagatcaattcaaaagcaggaggaattttattgttccagta
tgctggtgttgccttgcacacaaaagagaaagaacgaccccacagactaa
ctagaagtttacttagaaaagattatcagtgtttcttgaagagaaattat
tttatctgtaagtatattttaaaaatttcaaaatagcaaaaactcttaga
agttaaacattaaaaaatgctaatttcaagcacagtgcgaaaaaatatca
atattatttccatgatgtttgtagaacatgatttcaatattttcaactgt
taatattcaataaacagaaaagttattttaagatatattccattatgtct
ccctttgcatttctgagtttattaatttggatactgtctttgtgccctct
ggttagtctggctaaggatttatctatttttttgatttttctcaaagaac
cagcttctagtttggttgattctttgtatagttccttttgcttctatttg
gttgattctttgtatagttccttttgcttctatttggttgatttcagccc
tgagtttgattatttcctgccatctactccttttgggtgtatttgcttct
ttttgttctagggctttcaggtgtgttgtcaggctgctattgtagctctc
tttcagtttatttttggaggtacttagagctatgagtttttctttcttag
gactgcttttcatcgcgtcccaaacgtttgtttctgttgcggcttcattt
tcattaaattctaataagtcttttaatttttttttttatttcttcttgac
caagttatcattgagtagagcatgttcagctttcatgtgtat
gaattcttgaataagtggtgagaatagattgctaaatttactcttaaaca
aaacactttatagacataatcttacattggtaaaaaatctctaaattgcc
aggcggtggtagcacacacctttaatcccagcacttggaaggcagaggca
ggcagatttctgagtttgaggccagcctggtctacaaagtgagttccagg
acagcaaggactgtacagagaaatcctgtctcaaaaaaaaaaaaaaaaaa
ctctaaattttgatacaaaattgaattatacttccttacattttgtgtga
aatttatataccggtacaaatttcaagcttgcattggtataaatatttgt
atattgatacaaaatttaaaattaattttgttactctttgataggcattg
tgcctatacaattcattctttaagtaactcaaatgttggtgcctcacatt
agaatatcttgcctttactagggactggtgccaaagcagagattcatgga
atgtaatgagaattcagaccagcacaggaaaaaaattctaatagaccttc
tcaggataaaatagactgttgaggaatccatggatatcctccaaagaata
aaggtttgtaattcaagtaacaaagtaatttgataagtgtagggatgagt
ctagagttaatatacagcaaccccacacatatacacccaaatccacagaa
catgggtggcataacaatgttgtgagggtcaagatcaaagtttgtgaatc
ttgtgtcattgtgattctctatgtaacagtggccctgagaactctgtctc
tgtaacatgaatacaaaagaaccttcaagtgtaaatagaatccagacatt
gcaataacaaaatatacaaatctttgttagagtgtttatcaatcaaatca
gcctgattgatttggtcatcaaatatcacagaaaaaacatttttgtgaga
tgtgctgtgctcatactgtgggatgtaaagttttaactggccatagtgtc
tgcctattggctgttcagctctcattgtgagcaataaacagaaaaatgaa
atgaaatgctggaacaactgtacagttagatgaaggcaagaattcccatg
aagtctagtatttatcatggaagctgacggaccttatgcccacgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_13665140_13666230
seq2: B6Ng01-168N08.b_50_1141

seq1  GAATTCCTGGGCAATAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGCAATAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGC  50

seq1  ACTTGGGAGGCAGAGGCAGGTGAATTTCTGAGTTCGAGGCCAGCCTGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGGCAGAGGCAGGTGAATTTCTGAGTTCGAGGCCAGCCTGGTC  100

seq1  TACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTC  150

seq1  AAAAAAAAAAAAAAAGAATTCCTGGGCAATGAATGGCCAACACACCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGAATTCCTGGGCAATGAATGGCCAACACACCAAAT  200

seq1  GTAAGACTCTGGCAAGCCTTAACTTACTGGAGATCCCCTGAGTAAATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACTCTGGCAAGCCTTAACTTACTGGAGATCCCCTGAGTAAATAAC  250

seq1  TTGAAGTAGGAGATCAATTCAAAAGCAGGAGGAATTTTATTGTTCCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTAGGAGATCAATTCAAAAGCAGGAGGAATTTTATTGTTCCAGTA  300

seq1  TGCTGGTGTTGCCTTGCACACAAAAGAGAAAGAACGACCCCACAGACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGTTGCCTTGCACACAAAAGAGAAAGAACGACCCCACAGACTAA  350

seq1  CTAGAAGTTTACTTAGAAAAGATTATCAGTGTTTCTTGAAGAGAAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGTTTACTTAGAAAAGATTATCAGTGTTTCTTGAAGAGAAATTAT  400

seq1  TTTATCTGTAAGTATATTTTAAAAATTTCAAAATAGCAAAAACTCTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGTAAGTATATTTTAAAAATTTCAAAATAGCAAAAACTCTTAGA  450

seq1  AGTTAAACATTAAAAAATGCTAATTTCAAGCACAGTGCGAAAAAATATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAACATTAAAAAATGCTAATTTCAAGCACAGTGCGAAAAAATATCA  500

seq1  ATATTATTTCCATGATGTTTGTAGAACATGATTTCAATATTTTCAACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTTCCATGATGTTTGTAGAACATGATTTCAATATTTTCAACTGT  550

seq1  TAATATTCAATAAACAGAAAAGTTATTTTAAGATATATTCCATTATGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCAATAAACAGAAAAGTTATTTTAAGATATATTCCATTATGTCT  600

seq1  CCCTTTGCATTTCTGAGTTTATTAATTTGGATACTGTCTTTGTGCCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGCATTTCTGAGTTTATTAATTTGGATACTGTCTTTGTGCCCTCT  650

seq1  GGTTAGTCTGGCTAAGGATTTATCTATTTTTTTGATTTTTCTCAAAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTCTGGCTAAGGATTTATCTATTTTTTTGATTTTTCTCAAAGAAC  700

seq1  CAGCTTCTAGTTTGGTTGATTCTTTGTATAGTTCCTTTTGCTTCTATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTAGTTTGGTTGATTCTTTGTATAGTTCCTTTTGCTTCTATTTG  750

seq1  GTTGATTCTTTGTATAGTTCCTTTTGCTTCTATTTGGTTGATTTCAGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTCTTTGTATAGTTCCTTTTGCTTCTATTTGGTTGATTTCAGCCC  800

seq1  TGAGTTTGATTATTTCCTGCCATCTACTCCTTTTGGGTGTATTTGCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGATTATTTCCTGCCATCTACTCCTTTTGGGTGTATTTGCTTCT  850

seq1  TTTTGTTCTAGGGCTTTCAGGTGTGTTGTCAGGCTGCTATTGTAAGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTGTTCTAGGGCTTTCAGGTGTGTTGTCAGGCTGCTATTGT-AGCTCT  899

seq1  C-TTCAGTTTATTTTTGGAGGTACTTAGAGCTATGAGTTTT--CTTCTTA  947
      | |||||||||||||||||||||||||||||||||||||||   ||||||
seq2  CTTTCAGTTTATTTTTGGAGGTACTTAGAGCTATGAGTTTTTCTTTCTTA  949

seq1  GGACTGC-TTTCATCGCGTCCCAAACGTTTGTTTCTGTTGCGGCTTCATT  996
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTTTTCATCGCGTCCCAAACGTTTGTTTCTGTTGCGGCTTCATT  999

seq1  TTCATTAAATTCTATAAAGTCTTTAATTTTTTTTCTTTATTTCTTCCTTG  1046
      ||||||||||||||  |||||||| | ||||||| |||||||||| ||||
seq2  TTCATTAAATTCTAATAAGTCTTTTAATTTTTTTTTTTATTTCTT-CTTG  1048

seq1  ACCAAGTTATCATTGAGTAGAGCATTGTTCAGCTTCCATGTGTAT  1091
      |||||||||||||||||||||||| |||||||||| |||||||||
seq2  ACCAAGTTATCATTGAGTAGAGCA-TGTTCAGCTTTCATGTGTAT  1092

seq1: chr7_13689355_13690524
seq2: B6Ng01-168N08.g_70_1216 (reverse)

seq1  TTGCGTTGCGCATAAGTTTCTGTCAGCTTTTCATGATTAAATACTTAGAC  50
      ||||| || |||||||  || |||||| || ||||| ||||||| |||||
seq2  TTGCG-TGGGCATAAG-GTCCGTCAGC-TTCCATGA-TAAATAC-TAGAC  45

seq1  TTTTCATGTGGGATTCTTTGCCTTTCATTCTACTGTACAGTGTGTTCTCA  100
        |||||| || |||| ||||| |||||   |||||||||| ||||| ||
seq2  --TTCATG-GGAATTC-TTGCC-TTCATCTAACTGTACAGT-TGTTC-CA  88

seq1  GGCATTTCATTTCATTTTATCTGTTTATTTTGCTCACATATGAGAGCTGA  150
       ||||||||||||||||| ||||||||  ||||||||| |||||||||||
seq2  -GCATTTCATTTCATTTT-TCTGTTTA--TTGCTCACA-ATGAGAGCTGA  133

seq1  ACAGCCAATAGGCAGAACACTATGGCCAGTGTAAAACTATACATCCCACA  200
      ||||||||||||||| |||||||||||||| ||||||| |||||||||||
seq2  ACAGCCAATAGGCAG-ACACTATGGCCAGT-TAAAACTTTACATCCCACA  181

seq1  GTATTGAGCACAGCACATCTTCACAAAAATGTTTTTTTCTGTGATATTTG  250
      ||| ||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  GTA-TGAGCACAGCACATC-TCACAAAAATG-TTTTTTCTGTGATATTTG  228

seq1  ATGACCAAATCAATCAGGCTGATTTTGATTGATAAACACTCTAACAAAGA  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGACCAAATCAATCAGGCTGA-TTTGATTGATAAACACTCTAACAAAGA  277

seq1  TTTGTATATTTTGTTATTGCAATGTCTGGATTCTATTTACACTTGAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATATTTTGTTATTGCAATGTCTGGATTCTATTTACACTTGAAGGT  327

seq1  TCTTTTGTATTCATGTTACAGAGACAGAGTTCTCAGGGCCACTGTTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTATTCATGTTACAGAGACAGAGTTCTCAGGGCCACTGTTACAT  377

seq1  AGAGAATCACAATGACACAAGATTCACAAACTTTGATCTTGACCCTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATCACAATGACACAAGATTCACAAACTTTGATCTTGACCCTCACA  427

seq1  ACATTGTTATGCCACCCATGTTCTGTGGATTTGGGTGTATATGTGTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTTATGCCACCCATGTTCTGTGGATTTGGGTGTATATGTGTGGGG  477

seq1  TTGCTGTATATTAACTCTAGACTCATCCCTACACTTATCAAATTACTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTATATTAACTCTAGACTCATCCCTACACTTATCAAATTACTTTG  527

seq1  TTACTTGAATTACAAACCTTTATTCTTTGGAGGATATCCATGGATTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGAATTACAAACCTTTATTCTTTGGAGGATATCCATGGATTCCTC  577

seq1  AACAGTCTATTTTATCCTGAGAAGGTCTATTAGAATTTTTTTCCTGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTATTTTATCCTGAGAAGGTCTATTAGAATTTTTTTCCTGTGCT  627

seq1  GGTCTGAATTCTCATTACATTCCATGAATCTCTGCTTTGGCACCAGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAATTCTCATTACATTCCATGAATCTCTGCTTTGGCACCAGTCCC  677

seq1  TAGTAAAGGCAAGATATTCTAATGTGAGGCACCAACATTTGAGTTACTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGGCAAGATATTCTAATGTGAGGCACCAACATTTGAGTTACTTA  727

seq1  AAGAATGAATTGTATAGGCACAATGCCTATCAAAGAGTAACAAAATTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAATTGTATAGGCACAATGCCTATCAAAGAGTAACAAAATTAAT  777

seq1  TTTAAATTTTGTATCAATATACAAATATTTATACCAATGCAAGCTTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTTGTATCAATATACAAATATTTATACCAATGCAAGCTTGAAA  827

seq1  TTTGTACCGGTATATAAATTTCACACAAAATGTAAGGAAGTATAATTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACCGGTATATAAATTTCACACAAAATGTAAGGAAGTATAATTCAA  877

seq1  TTTTGTATCAAAATTTAGAGTTTTTTTTTTTTTTTTTTGAGACAGGATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATCAAAATTTAGAGTTTTTTTTTTTTTTTTTTGAGACAGGATTT  927

seq1  CTCTGTACAGTCCTTGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACAGTCCTTGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGC  977

seq1  CTCAAACTCAGAAATCTGCCTGCCTCTGCCTTCCAAGTGCTGGGATTAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCAGAAATCTGCCTGCCTCTGCCTTCCAAGTGCTGGGATTAAA  1027

seq1  GGTGTGTGCTACCACCGCCTGGCAATTTAGAGATTTTTTACCAATGTAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGCTACCACCGCCTGGCAATTTAGAGATTTTTTACCAATGTAAG  1077

seq1  ATTATGTCTATAAAGTGTTTTGTTTAAGAGTAAATTTAGCAATCTATTCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTCTATAAAGTGTTTTGTTTAAGAGTAAATTTAGCAATCTATTCT  1127

seq1  CACCACTTATTCAAGAATTC  1170
      ||||||||||||||||||||
seq2  CACCACTTATTCAAGAATTC  1147