BAC Information

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BAC

Clone NameB6Ng01-169L05
Chromosome7 (Build37)
Map Location 129,298,681 - 129,447,220
singlet/doubletdoublet
Overlap genePlk1, Ern2, 2010110P09Rik, Prkcb1
Upstream geneOtoa, LOC668556, Hs3st2, Usp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5
Downstream geneLOC668486, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169L05.bB6Ng01-169L05.g
ACCDH960609DH960610
length1,088785
definitionDH960609|Mus musculus domesticus DNA, BAC clone: B6Ng01-169L05, 5' end.DH960610|Mus musculus domesticus DNA, BAC clone: B6Ng01-169L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,298,681 - 129,299,688)(129,446,736 - 129,447,220)
sequence
gaattcattactgtctgctacaagctgttcattcccaacccaagccgagc
ttaactggaaggagataaattgatgagcaagctcttgaccctggaccctg
gaaggtcaggacccctctgtagagctcacaaccataaacacatcctaggt
gcttgctcttagcatctgacttggagaaatgcctccaggaaagagcttgg
tctttgaagggaccctgtagaaccaggctgctagtcagctgtctctaatg
catctctcactagttatccctgtagaaagttgcacactgtaggaaggacc
caccctagagactgtggccccctccaactgctttggacacagcagaccct
gccccttcctaaaagattgtcttcctgcactgggctcattgttctgcaac
tttcctcaatagactgatgttcaccttccccattttttcccagtacataa
tgccagtaagatagggcgttgattcaagtagagctgtccccaggactgat
cttttctaggtttctcaatgagcagataatcaagacaaaggaggtagaag
ggaaggaaacccatcttaacatttttgaataattcaggatttcacctttt
atgagtttgcctggcttatacaatggaaagtagcgttcctctgactccgg
aggctggatgtccaggagcaaaggcagccgcctccttgctgggtcctcac
tttccctctacatgtctgtgacctaattcctttttaactgggttagggat
tactctaacactgccaccttagtatcttttaaattatgtgtgtgtgtctg
agtgtgtgtgtatgaacacaagtgtggaagagaggacagattccacgcgt
gggctcttgtgacctaccctgtgggctcagaggctctagctcagtcacag
gcttagaggcaagtacctttacctactaagccatctactgacccgactct
tttaatgtaagcagcgtttcaggactgtctgcacatgtagccaagaagtc
agtcagcatgctcagtcgatgtcaatatactgtcactgatctgaacgatt
tttctagcccattgcataaaaatatcattggcaaaaaa
gaattcaaaacaatgcatttgtatccctaaaaataaattaagcctccaca
gtccacgggccaatgtcatgagcctccaaggctgcttcttgatgctcttc
agagcgacttttaaaccatgctgtctacccacggtagaaacgccatttat
gtctgacccagttcacccgagcttgcataggaacacacgaaataaaagat
tcatgaagccatacttacccttcccaaggctgaggcattctgatagtttt
tcctattctgatttttcatagtgtacctgacttactaaattgatgttgtg
gtcctccagtgagtggtaaaccacagcagtgaaaatcaaatgtagaagag
gagctggggagatgaatcagttgtaaaatgcttgtgcccctatagtctgt
aaatctctctatgcctctctgtgtgtgcatgcatgcacgagtgcgtgcgt
gcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggagccccgtataga
aaaaatattaatgttataaaaacattcggtgtaaaggagacatcttaggt
tacttatatttagcatacattaaatcttttcttgatctagaaagtctctt
atatatggactgtggattctttcattctctgtatatacagtccatccttc
agttattaatgtgacaaggagaaaaaaatactttgattttgcaaaggctg
tgcgatagtcctctctgtctgactgaatctggtgaagtgttaagccagat
tttacacctttatcgtggtttaatctgcttggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_129298681_129299688
seq2: B6Ng01-169L05.b_142_1129

seq1  GAAGGTCAGGACCCCTCTGTAGAGCTCACAACCATAAACACATCCTAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCAGGACCCCTCTGTAGAGCTCACAACCATAAACACATCCTAGGT  50

seq1  GCTTGCTCTTAGCATCTGACTTGGAGAAATGCCTCCAGGAAAGAGCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTCTTAGCATCTGACTTGGAGAAATGCCTCCAGGAAAGAGCTTGG  100

seq1  TCTTTGAAGGGACCCTGTAGAACCAGGCTGCTAGTCAGCTGTCTCTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAGGGACCCTGTAGAACCAGGCTGCTAGTCAGCTGTCTCTAATG  150

seq1  CATCTCTCACTAGTTATCCCTGTAGAAAGTTGCACACTGTAGGAAGGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCACTAGTTATCCCTGTAGAAAGTTGCACACTGTAGGAAGGACC  200

seq1  CACCCTAGAGACTGTGGCCCCCTCCAACTGCTTTGGACACAGCAGACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTAGAGACTGTGGCCCCCTCCAACTGCTTTGGACACAGCAGACCCT  250

seq1  GCCCCTTCCTAAAAGATTGTCTTCCTGCACTGGGCTCATTGTTCTGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTCCTAAAAGATTGTCTTCCTGCACTGGGCTCATTGTTCTGCAAC  300

seq1  TTTCCTCAATAGACTGATGTTCACCTTCCCCATTTTTTCCCAGTACATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAATAGACTGATGTTCACCTTCCCCATTTTTTCCCAGTACATAA  350

seq1  TGCCAGTAAGATAGGGCGTTGATTCAAGTAGAGCTGTCCCCAGGACTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTAAGATAGGGCGTTGATTCAAGTAGAGCTGTCCCCAGGACTGAT  400

seq1  CTTTTCTAGGTTTCTCAATGAGCAGATAATCAGGACAAAGGAGGTAGAAG  450
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTTTCTAGGTTTCTCAATGAGCAGATAATCAAGACAAAGGAGGTAGAAG  450

seq1  GGAAGGAAACCCATCTTAACATTTTTGAATAATTCAGGATTTCACCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAACCCATCTTAACATTTTTGAATAATTCAGGATTTCACCTTTT  500

seq1  ATGAGTTTGCCTGGCTTATACAATGGAAAGTAGCGTTCCTCTGACTCCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTGCCTGGCTTATACAATGGAAAGTAGCGTTCCTCTGACTCCGG  550

seq1  AGGCTGGATGTCCAGGAGCAAAGGCAGCCGCCTCCTTGCTGGGTCCTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGATGTCCAGGAGCAAAGGCAGCCGCCTCCTTGCTGGGTCCTCAC  600

seq1  TTTCCCTCTACATGTCTGTGACCTAATTCCTTTTTAACTGGGTTAGGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCTACATGTCTGTGACCTAATTCCTTTTTAACTGGGTTAGGGAT  650

seq1  TACTCTAACACTGCCACCTTAGTATCTTTTAAATTATGTGTGTGTGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAACACTGCCACCTTAGTATCTTTTAAATTATGTGTGTGTGTCTG  700

seq1  AGTGTGTGTGTATGAACACAAGTGTGGAAGAGAGGACAGATTCCACGCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGTATGAACACAAGTGTGGAAGAGAGGACAGATTCCACGCGT  750

seq1  GGGCTCTTGTGACCTACCCTGTGGGCTCAGAGGCTCTAGCTCAGGTCACC  800
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  GGGCTCTTGTGACCTACCCTGTGGGCTCAGAGGCTCTAGCTCA-GTCA-C  798

seq1  AGGCTTAGGGGCAAGTACCTTTACCTACTAAGCCATCTTACTGGCCCCGA  850
      |||||||| |||||||||||||||||||||||||||| |||| | |||||
seq2  AGGCTTAGAGGCAAGTACCTTTACCTACTAAGCCATC-TACT-GACCCGA  846

seq1  CTTCTTTTTAATGTAAGCAGCGTTTTCAAGGCCTGTCTGCACATGTAGCC  900
      ||   ||||||||||||||||||||   ||| ||||||||||||||||||
seq2  CT--CTTTTAATGTAAGCAGCGTTT--CAGGACTGTCTGCACATGTAGCC  892

seq1  CACAGAAGTCAGGACAGCATGGCTCAGTCATATTGTCAATATACTGTCAC  950
         |||||||| | |||||| ||||||||    |||||||||||||||||
seq2  --AAGAAGTCA-GTCAGCAT-GCTCAGTC--GATGTCAATATACTGTCAC  936

seq1  TGTTTCCTGAGCACATTTTTCTGGCCACATTGCATAAAAATATTCATTTG  1000
      || |  |||| |  |||||||| ||| ||||||||||||||| ||||| |
seq2  TGAT--CTGAAC-GATTTTTCTAGCC-CATTGCATAAAAATA-TCATTGG  981

seq1  CCAAAAAA  1008
      | ||||| 
seq2  CAAAAAA-  988

seq1: chr7_129446736_129447220
seq2: B6Ng01-169L05.g_68_552 (reverse)

seq1  CACACACACACACACACACACACACACACACACGCACGCACGCACTCGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACGCACGCACGCACTCGTG  50

seq1  CATGCATGCACACACAGAGAGGCATAGAGAGATTTACAGACTATAGGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGCACACACAGAGAGGCATAGAGAGATTTACAGACTATAGGGGC  100

seq1  ACAAGCATTTTACAACTGATTCATCTCCCCAGCTCCTCTTCTACATTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCATTTTACAACTGATTCATCTCCCCAGCTCCTCTTCTACATTTGA  150

seq1  TTTTCACTGCTGTGGTTTACCACTCACTGGAGGACCACAACATCAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTGCTGTGGTTTACCACTCACTGGAGGACCACAACATCAATTTA  200

seq1  GTAAGTCAGGTACACTATGAAAAATCAGAATAGGAAAAACTATCAGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCAGGTACACTATGAAAAATCAGAATAGGAAAAACTATCAGAATG  250

seq1  CCTCAGCCTTGGGAAGGGTAAGTATGGCTTCATGAATCTTTTATTTCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCTTGGGAAGGGTAAGTATGGCTTCATGAATCTTTTATTTCGTG  300

seq1  TGTTCCTATGCAAGCTCGGGTGAACTGGGTCAGACATAAATGGCGTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTATGCAAGCTCGGGTGAACTGGGTCAGACATAAATGGCGTTTCT  350

seq1  ACCGTGGGTAGACAGCATGGTTTAAAAGTCGCTCTGAAGAGCATCAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGGGTAGACAGCATGGTTTAAAAGTCGCTCTGAAGAGCATCAAGAA  400

seq1  GCAGCCTTGGAGGCTCATGACATTGGCCCGTGGACTGTGGAGGCTTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTGGAGGCTCATGACATTGGCCCGTGGACTGTGGAGGCTTAATT  450

seq1  TATTTTTAGGGATACAAATGCATTGTTTTGAATTC  485
      |||||||||||||||||||||||||||||||||||
seq2  TATTTTTAGGGATACAAATGCATTGTTTTGAATTC  485