BAC Information

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BAC

Clone NameB6Ng01-169O04
Chromosome7 (Build37)
Map Location 94,372,716 - 94,547,877
singlet/doubletdoublet
Overlap geneLOC621477, Nox4
Upstream geneVmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430
Downstream geneTyr, Grm5, Ctsc, LOC100039756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169O04.bB6Ng01-169O04.g
ACCDH960741DH960742
length1,2081,021
definitionDH960741|Mus musculus domesticus DNA, BAC clone: B6Ng01-169O04, 5' end.DH960742|Mus musculus domesticus DNA, BAC clone: B6Ng01-169O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,372,716 - 94,373,774)(94,546,851 - 94,547,877)
sequence
gaattcattttctgttggcctcctactgcaggacatgcagaaaacctttc
agagtattgtgattccctagtgagactcctttgatgaaaactaaattttc
attttcaagtagttattaattagagatagtttctgagttatagaaagggg
catgtatcctctgttttcagctctaagaacccctctggcacagatcaatg
caggcccatgcatgctgcctcactatgttcacatctgttctgttgtgttt
agatgaccttgttttgtatgtgtcttccatcccctttggttcttatactt
ttttgcctcctcttcctcagggttctatgagccctaaggtgagaaatgat
gaaatgttccattgaagtctgagttttgcaaggtctctcactcgctgcct
attgtctgattttggtctctgtatttgttcccatctgatgcaggaggaag
cccctctgatcatgactgagcaatgtactggtctatgagtatagcagaat
gtcactggatgtcattttaattctacattgctttcgttgaacagtaatat
ttggttttagcctagggctctgggctaaataatctcgggctcttggtcac
ccaggcaatgtgagatagaggtcccatctcacagagtttgctttaagtaa
tattagatattggcaagttcctctcacaagcatggtggcaacattgtact
ggtgtatctttcagtcaaaacttctttgtcaattaaggggtttgtagcta
gatggttgcttactattgttctgtgatagcaagaggaatccctcatagaa
tgtatttatgtaaacttaaaattttgctcagattttaggaaatgtacaga
ctttatgcagttaatctgtagttcactttgctgaaaagaatcctatcata
aaacaatttgagcttcattttctccaaatgatacccttatttggacagaa
tttactctacattctaagtctactagcacatcagtatgtaatcacccaga
acataaacagaacttttaatttaagtccttgatgctatttcctttttcag
ctgaccactttgcttaattggaaattgaatcaaaacaattcttaatttct
gaaattattcatttaaattctttactggtttttggcaagaaactttactg
ggggcattcactccccctgacgtaccgatagatcagatacaagtctccca
tcatgtat
gaattctttgcttagaggcatataaattagattttatctacaaaatgaat
tttatagtatcatcctaaaaactaataatttcttaaagaaaaaggaatat
acatggagagaaacctatagtagaaattatgacctctatagtcccttaaa
tatatgatcttgctatttgagaattcttgtgtcccaaaattacatccagt
atgctatatgtcatacaattccattattttctcaaaaagatatattacat
aagataattaatatttgggtatgtgtgtatttataattctaaaacttggg
aaacaagagacagaaggaaacaaagtgcaaggctatctttggctacatag
caaatttgagaatgactcattcaatatgaggctttgtttcaaaacaattg
agaaagtaagtactattttatattcctcaccaggctcaaaggcaaaatct
aatggccagtgtgagaagtaatttgccgcattcacatgactggactatga
cattaacagctgtagaatgcacattctcaagattattatgccagtgtgta
gttaggcagtactccttcaattatttttcttttttcacaaaccaacaacc
acctctccttggaattactaatttatctgtaaacttatagaaattccaca
gacaccattttaattttaatatttattaccatcaaaattcgtgatttaag
atttatacaacagtaaccaccaccatagaatctaaaaagaaatgaagctg
tcttctatatgtgtgataaagctttaatttattcctgttcaaaaatatac
catgtttaacatatagatccttgaacatgcactggagtttagattaggca
aggaagttcactcaacatagcacacaagtctgaaatatcatcttgtttgt
aagtttgacctgaatttttgaaatgtgatgaattcacataggcataaaat
agttatgattggtaggaatcagtatgcacatcagctggacagcccaagtt
tttttttatgagtaatttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_94372716_94373774
seq2: B6Ng01-169O04.b_339_1253

seq1  TATACTTTTTTGCCTCCTCTTCCTCAGGGTTCTATGAGCCCTAAGGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTTTTGCCTCCTCTTCCTCAGGGTTCTATGAGCCCTAAGGTGAG  50

seq1  AAATGATGAAATGTTCCATTGAAGTCTGAGTTTTGCAAGGTCTCTCACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGAAATGTTCCATTGAAGTCTGAGTTTTGCAAGGTCTCTCACTC  100

seq1  GCTGCCTATTGTCTGATTTTGGTCTCTGTATTTGTTCCCATCTGATGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTATTGTCTGATTTTGGTCTCTGTATTTGTTCCCATCTGATGCAG  150

seq1  GAGGAAGCCCCTCTGATCATGACTGAGCAATGTACTGGTCTATGAGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGCCCCTCTGATCATGACTGAGCAATGTACTGGTCTATGAGTATA  200

seq1  GCAGAATGTCACTGGATGTCATTTTAATTCTACATTGCTTTCGTTGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGTCACTGGATGTCATTTTAATTCTACATTGCTTTCGTTGAACA  250

seq1  GTAATATTTGGTTTTAGCCTAGGGCTCTGGGCTAAATAATCTCGGGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTTGGTTTTAGCCTAGGGCTCTGGGCTAAATAATCTCGGGCTCT  300

seq1  TGGTCACCCAGGCAATGTGAGATAGAGGTCCCATCTCACAGAGTTTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACCCAGGCAATGTGAGATAGAGGTCCCATCTCACAGAGTTTGCTT  350

seq1  TAAGTAATATTAGATATTGGCAAGTTCCTCTCACAAGCATGGTGGCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAATATTAGATATTGGCAAGTTCCTCTCACAAGCATGGTGGCAACA  400

seq1  TTGTACTGGTGTATCTTTCAGTCAAAACTTCTTTGTCAATTAAGGGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTGGTGTATCTTTCAGTCAAAACTTCTTTGTCAATTAAGGGGTTT  450

seq1  GTAGCTAGATGGTTGCTTACTATTGTTCTGTGATAGCAAGAGGAATCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTAGATGGTTGCTTACTATTGTTCTGTGATAGCAAGAGGAATCCCT  500

seq1  CATAGAATGTATTTATGTAAACTTAAAATTTTGCTCAGATTTTAGGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAATGTATTTATGTAAACTTAAAATTTTGCTCAGATTTTAGGAAAT  550

seq1  GTACAGACTTTATGCAGTTAATCTGTAGTTCACTTTGCTGAAAAAGAATC  600
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTACAGACTTTATGCAGTTAATCTGTAGTTCACTTTGCTG-AAAAGAATC  599

seq1  CTATCATAAAACAATTTGAGCTTCATTTTCTCCAAATGATACCCTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATAAAACAATTTGAGCTTCATTTTCTCCAAATGATACCCTTATTT  649

seq1  GGACAGAATTTTACTCTACATTCTTAAGTCTACTAGCACATCAGTATGTA  700
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  GGACAGAA-TTTACTCTACATTC-TAAGTCTACTAGCACATCAGTATGTA  697

seq1  ATCACCCAGAACATAAACAGAACTTTTTAATTTTAAGTTCTTTGATGCTA  750
      |||||||||||||||||||||||||||  | |||||| || |||||||||
seq2  ATCACCCAGAACATAAACAGAACTTTT--AATTTAAG-TCCTTGATGCTA  744

seq1  TTT-CTTTTTCAGCTGACCACTTTGCTTATATTTGGAAAAATTGAATCAT  799
      ||| |||||||||||||||||||||||  || ||||  ||||||||||| 
seq2  TTTCCTTTTTCAGCTGACCACTTTGCT--TAATTGG--AAATTGAATCA-  789

seq1  AAACAAATTCTTAATTTCTGAAATATATCATTATAAATTC-TTACTGGGT  848
      |||| |||||||||||||||||||   ||||| ||||||| ||||| |||
seq2  AAAC-AATTCTTAATTTCTGAAATTATTCATT-TAAATTCTTTACT-GGT  836

seq1  TTTTTGCAAAGTAGAACTTTTACTGGGGAGGCATTCACTCACCCTAGACA  898
      |||| |||    ||||  |||||||||  ||||||||||| |||| ||| 
seq2  TTTTGGCA----AGAAACTTTACTGGG--GGCATTCACTCCCCCT-GAC-  878

seq1  GGGAAACCGCAATAGATCAAAGTACAGATGCTACCAACATCCAGTTAGGT  948
           ||||  |||||||| | |||| |  || ||| |||  |       
seq2  ---GTACCG--ATAGATCAGA-TACA-AGTCTCCCATCATGTAT------  915

seq1  GAATCAATGAATTTCATTGGAGTTATTACTGCAATATGGGTGAGAGGTTA  998
                                                        
seq2  --------------------------------------------------  915

seq1  CATATAGGAGCAGAAATGACTCAAAGACAGCTGCATCACCAAAGCCCACC  1048
                                                        
seq2  --------------------------------------------------  915

seq1  CCATCATGTAT  1059
                 
seq2  -----------  915

seq1: chr7_94546851_94547877
seq2: B6Ng01-169O04.g_69_1089 (reverse)

seq1  AATAAA--CCTCATAAAAAAAAACTTGGGCTTGTCCAGGCTTGATGTGCA  48
      ||||||   ||||||||||||||||||||| |||||||   |||||||| 
seq2  AATAAATTACTCATAAAAAAAAACTTGGGC-TGTCCAG--CTGATGTGC-  46

seq1  ATACTGATTCCTTACCAATCATAACTTATTTTTATGCCTATGTGAATTCA  98
      ||||||||||| ||||||||||||||   |||||||||||||||||||||
seq2  ATACTGATTCC-TACCAATCATAACT--ATTTTATGCCTATGTGAATTCA  93

seq1  TCACATTTCAAAAATTCAGGTCAAACTTACAAAACAAGATGATATTTCAG  148
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCACATTTCAAAAATTCAGGTCAAACTTAC-AAACAAGATGATATTTCAG  142

seq1  ACTTGTGTGCTATGTTGAGTGAACTTCCTTGCCTAATCTAAACTCCAGTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGTGCTATGTTGAGTGAACTTCCTTGCCTAATCTAAACTCCAGTG  192

seq1  CATGTTCAAGGATCTATATGTTAAACATGGTATATTTTTGAACAGGAATA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCAAGGATCTATATGTTAAACATGGTATATTTTTGAACAGGAATA  242

seq1  AATTAAAGCTTTATCACACATATAGAAGACAGCTTCATTTCTTTTTAGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGCTTTATCACACATATAGAAGACAGCTTCATTTCTTTTTAGAT  292

seq1  TCTATGGTGGTGGTTACTGTTGTATAAATCTTAAATCACGAATTTTGATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGTGGTGGTTACTGTTGTATAAATCTTAAATCACGAATTTTGATG  342

seq1  GTAATAAATATTAAAATTAAAATGGTGTCTGTGGAATTTCTATAAGTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAATATTAAAATTAAAATGGTGTCTGTGGAATTTCTATAAGTTTA  392

seq1  CAGATAAATTAGTAATTCCAAGGAGAGGTGGTTGTTGGTTTGTGAAAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAATTAGTAATTCCAAGGAGAGGTGGTTGTTGGTTTGTGAAAAAA  442

seq1  GAAAAATAATTGAAGGAGTACTGCCTAACTACACACTGGCATAATAATCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAATTGAAGGAGTACTGCCTAACTACACACTGGCATAATAATCT  492

seq1  TGAGAATGTGCATTCTACAGCTGTTAATGTCATAGTCCAGTCATGTGAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGTGCATTCTACAGCTGTTAATGTCATAGTCCAGTCATGTGAAT  542

seq1  GCGGCAAATTACTTCTCACACTGGCCATTAGATTTTGCCTTTGAGCCTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCAAATTACTTCTCACACTGGCCATTAGATTTTGCCTTTGAGCCTGG  592

seq1  TGAGGAATATAAAATAGTACTTACTTTCTCAATTGTTTTGAAACAAAGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATATAAAATAGTACTTACTTTCTCAATTGTTTTGAAACAAAGCC  642

seq1  TCATATTGAATGAGTCATTCTCAAATTTGCTATGTAGCCAAAGATAGCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTGAATGAGTCATTCTCAAATTTGCTATGTAGCCAAAGATAGCCT  692

seq1  TGCACTTTGTTTCCTTCTGTCTCTTGTTTCCCAAGTTTTAGAATTATAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTTGTTTCCTTCTGTCTCTTGTTTCCCAAGTTTTAGAATTATAAA  742

seq1  TACACACATACCCAAATATTAATTATCTTATGTAATATATCTTTTTGAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACATACCCAAATATTAATTATCTTATGTAATATATCTTTTTGAGA  792

seq1  AAATAATGGAATTGTATGACATATAGCATACTGGATGTAATTTTGGGACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGGAATTGTATGACATATAGCATACTGGATGTAATTTTGGGACA  842

seq1  CAAGAATTCTCAAATAGCAAGATCATATATTTAAGGGACTATAGAGGTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTCTCAAATAGCAAGATCATATATTTAAGGGACTATAGAGGTCA  892

seq1  TAATTTCTACTATAGGTTTCTCTCCATGTATATTCCTTTTTCTTTAAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTACTATAGGTTTCTCTCCATGTATATTCCTTTTTCTTTAAGAA  942

seq1  ATTATTAGTTTTTAGGATGATACTATAAAATTCATTTTGTAGATAAAATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAGTTTTTAGGATGATACTATAAAATTCATTTTGTAGATAAAATC  992

seq1  TAATTTATATGCCTCTAAGCAAAGAATTC  1027
      |||||||||||||||||||||||||||||
seq2  TAATTTATATGCCTCTAAGCAAAGAATTC  1021