BAC Information

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BAC

Clone NameB6Ng01-169P23
Chromosome7 (Build37)
Map Location 29,697,819 - 29,853,048
singlet/doubletdoublet
Overlap geneActn4, Eif3s12, Map4k1, Ryr1
Upstream gene1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12
Downstream geneRasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169P23.bB6Ng01-169P23.g
ACCDH960824DH960825
length1,0841,027
definitionDH960824|Mus musculus domesticus DNA, BAC clone: B6Ng01-169P23, 5' end.DH960825|Mus musculus domesticus DNA, BAC clone: B6Ng01-169P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,697,819 - 29,698,903)(29,852,024 - 29,853,048)
sequence
gaattctccttcctaccacacccaagcaggctggatgcaggtgttcctct
gacacccccaactcttgagttctctccatctccagggtcccttcccacac
cagagcagctcaggagtaccatcattctgcagatgtctggcccgtaactc
tgcaaccccataactctgcaaccccatcagcctagtatgccacagatggc
tggttgctttggacatggtcccctgcctttcccaagaggccagaacttca
gctttgtgtaagcaaataaagagcaaaactctgcacaggaaatggcggcc
gatgggaaggttcaaaattccctcttttctcctctggacagaagaatgct
tctagaatccagaaggtcaagaaagggaggggatcaatggtcaagtaaga
cagacctgaaaacaacccagccagctgctatgcccatagaggacttgaca
gtgctgagagcgtccaggaggtgagcagatggacgctaactcgagcagct
cccaccctgtgctggtcacgagctcagctgtgaaggtcagcaatgggcgg
ctctggggatggggatggagatacccaccttccgcagcttgtcatactca
atcagctcaggcctgtgccggtggatgagtgcattgaaggccagcccgtc
cttccagctggaagagaacacacaggttagaaacgggggccctgcggtga
catttttttgttgttgttgagaattctagaatttgtttgttttttttaaa
cagaaatattttaagaatgcgctttcgttttaatcccaagagtgggaatg
tggggctgctttcgtcggactgtccgcagcagtgactgtgatttgcctcg
tgctctagcagaagcatttttttgttagttgcagataatttctgtgattg
catgatgtttggaattttggtaagtttcagaggttatgtaaatgctggag
ctccaagaaggcgaggtgggtgctttcgttggtctttttaggtggttggt
gtagttttttcagcagcccacgtcaaagagaaacaaaggaaagaatagac
tcaggaatcacctcctccctcactgtcttctcct
gaattcctgaacctgggcagaagcaacttcaagcaggggcagaaggaacg
ccttgggggcggggcttgggacggaggcggggccataaggaagccaaggg
gtagacctgaaagcagcaagcggacctcctactgggcggtgaagtcgcgg
ccagcagatatgctaaaggccaaaggggagaagcatggggaagctagact
cggagaacaacctaaggacctgcaagtgggcagtgtgcatagactgacca
gaaaggtgtgtggaatagggcaaggccggtgtctgagctgactgtctctg
cctctccacacaggggtcttaaggacatggaactggacacatcctccatt
gagaagcgatttgccttcggcttcctgcagcagctgcttcgctggatgga
catctcccaggagttcatcgcccacctgggtaggaaaaattccctcccat
cttttcacatcatctgcaaagacccacccagggcactgcttcacccatct
ctccctcaactagtatttgtgaagcatccgtcatggcagactctgctggg
gatgacggcatggattagcagggaacaagacagaggtggttcttcatctg
catcgctgttttggagtccgacagttagaatcacacatagctaagccaag
tgtgataggcagtgcctagtgttgggggaagaggacaccaggggaaggtg
ggctggggtgtagagccagctgccatttaagctgcgtattcaaggaagac
atgagtgacactgtaagatctgtgccaagacacggaggagtggggtgggg
gcacctgaacacctggagcgtgtcatggcaaacggcttgtgaaaccacca
cccttcatactaggtcatgcaaggaggagaggggggctccatagctagat
gggaggtaagagcttttcctctgcacagagatgggaggcacagtggggtc
tggagcagggaactatgctcagtgccaaagtcctctgatcttgactgtgg
gcctgataagtggtgaggtttggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_29697819_29698903
seq2: B6Ng01-169P23.b_46_1129

seq1  GAATTCTCCTTCCTACCACACCCAAGCAGGCTGGATGCAGGTGTTCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCCTACCACACCCAAGCAGGCTGGATGCAGGTGTTCCTCT  50

seq1  GACACCCCCAACTCTTGAGTTCTCTCCATCTCCAGGGTCCCTTCCCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCCCAACTCTTGAGTTCTCTCCATCTCCAGGGTCCCTTCCCACAC  100

seq1  CAGAGCAGCTCAGGAGTACCATCATTCTGCAGATGTCTGGCCCGTAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGCTCAGGAGTACCATCATTCTGCAGATGTCTGGCCCGTAACTC  150

seq1  TGCAACCCCATAACTCTGCAACCCCATCAGCCTAGTATGCCACAGATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCCCATAACTCTGCAACCCCATCAGCCTAGTATGCCACAGATGGC  200

seq1  TGGTTGCTTTGGACATGGTCCCCTGCCTTTCCCAAGAGGCCAGAACTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTTTGGACATGGTCCCCTGCCTTTCCCAAGAGGCCAGAACTTCA  250

seq1  GCTTTGTGTAAGCAAATAAAGAGCAAAACTCTGCACAGGAAATGGCGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGTAAGCAAATAAAGAGCAAAACTCTGCACAGGAAATGGCGGCC  300

seq1  GATGGGAAGGTTCAAAATTCCCTCTTTTCTCCTCTGGACAGAAGAATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAAGGTTCAAAATTCCCTCTTTTCTCCTCTGGACAGAAGAATGCT  350

seq1  TCTAGAATCCAGAAGGTCAAGAAAGGGAGGGGATCAATGGTCAAGTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATCCAGAAGGTCAAGAAAGGGAGGGGATCAATGGTCAAGTAAGA  400

seq1  CAGACCTGAAAACAACCCAGCCAGCTGCTATGCCCATAGAGGACTTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTGAAAACAACCCAGCCAGCTGCTATGCCCATAGAGGACTTGACA  450

seq1  GTGCTGAGAGCGTCCAGGAGGTGAGCAGATGGACGCTAACTCGAGCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGAGCGTCCAGGAGGTGAGCAGATGGACGCTAACTCGAGCAGCT  500

seq1  CCCACCCTGTGCTGGTCACGAGCTCAGCTGTGAAGGTCAGCAATGGGCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTGTGCTGGTCACGAGCTCAGCTGTGAAGGTCAGCAATGGGCGG  550

seq1  CTCTGGGGATGGGGATGGAGATACCCACCTTCCGCAGCTTGTCATACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGATGGGGATGGAGATACCCACCTTCCGCAGCTTGTCATACTCA  600

seq1  ATCAGCTCAGGCCTGTGCCGGTGGATGAGTGCATTGAAGGCCAGCCCGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTCAGGCCTGTGCCGGTGGATGAGTGCATTGAAGGCCAGCCCGTC  650

seq1  CTTCCAGCTGGAAGAGAACACACAGGTTAGAAACGGGGGCCCTGCGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCTGGAAGAGAACACACAGGTTAGAAACGGGGGCCCTGCGGTGA  700

seq1  CATTTTTTTGTTGTTGTTGAGAATTCTAGAATTTGTTTGTTTTTTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTGTTGTTGTTGAGAATTCTAGAATTTGTTTGTTTTTTTTAAA  750

seq1  CAGAAATATTTTAAGAATGCGCTTTCGTTTTAATCCCAAGAGTGGGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATATTTTAAGAATGCGCTTTCGTTTTAATCCCAAGAGTGGGAATG  800

seq1  TGGGGCTGC-TTCGTCGGACTGTCCGCAGCAGTGACTGTGATTTGCCTCG  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGCTTTCGTCGGACTGTCCGCAGCAGTGACTGTGATTTGCCTCG  850

seq1  TGCTCTAGCAGAAGCATTTTTTTGTTAGTTGCAGATAATTTCTGTGATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAGCAGAAGCATTTTTTTGTTAGTTGCAGATAATTTCTGTGATTG  900

seq1  CATGATGTTTGGAATTTTGGTAAGTTTTCAGAGGTTATGTAAATGCTGGA  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CATGATGTTTGGAATTTTGGTAAG-TTTCAGAGGTTATGTAAATGCTGGA  949

seq1  GCCCCAAG-AGGCGAGGTGGGTGCTTTCGTTGGTC-TTTTAGGTGGTTGG  997
      || ||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  GCTCCAAGAAGGCGAGGTGGGTGCTTTCGTTGGTCTTTTTAGGTGGTTGG  999

seq1  TGGTAG-TTTTTCAGCAGCCACGGTCAAAGAAGAAACAAAAGGAAAGAAA  1046
      | |||| |||||||||||||   ||||||| |||||| ||||||||||| 
seq2  T-GTAGTTTTTTCAGCAGCCCACGTCAAAG-AGAAAC-AAAGGAAAGAA-  1045

seq1  TTAGACTCAGGGATCAC--TCTCCCTCACTGTCTCTCTCCT  1085
       |||||||||| |||||   |||||||||||||| ||||||
seq2  -TAGACTCAGGAATCACCTCCTCCCTCACTGTCT-TCTCCT  1084

seq1: chr7_29852024_29853048
seq2: B6Ng01-169P23.g_69_1095 (reverse)

seq1  CAAACCAAACCTCA-CACCTATCCTGGCCACAGTCAAG-TCAGAGGGACT  48
      |||||||||||||| ||| ||||  | ||||||||||| ||||| |||||
seq2  CAAACCAAACCTCACCACTTATCAGGCCCACAGTCAAGATCAGA-GGACT  49

seq1  CTGGCCACCTGAGC-TAGGTCCCTGCT-CAGACCCCACTGTGCCT-CCAT  95
       ||||   |||||| ||| |||||||| ||||||||||||||||| ||||
seq2  TTGGC--ACTGAGCATAGTTCCCTGCTCCAGACCCCACTGTGCCTCCCAT  97

seq1  CTCTGTGCAGAGGACAAGCTCTTACCTCCCATCTAGCTATGGAGCCCCCC  145
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCAGAGGAAAAGCTCTTACCTCCCATCTAGCTATGGAGCCCCCC  147

seq1  TCTCCTCCTTGCATGACCTAGTATGAAGGGTGGTGGTTTCACAAGCCGTT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCTTGCATGACCTAGTATGAAGGGTGGTGGTTTCACAAGCCGTT  197

seq1  TGCCATGACACGCTCCAGGTGTTCAGGTGCCCCCACCCCACTCCTCCGTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGACACGCTCCAGGTGTTCAGGTGCCCCCACCCCACTCCTCCGTG  247

seq1  TCTTGGCACAGATCTTACAGTGTCACTCATGTCTTCCTTGAATACGCAGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCACAGATCTTACAGTGTCACTCATGTCTTCCTTGAATACGCAGC  297

seq1  TTAAATGGCAGCTGGCTCTACACCCCAGCCCACCTTCCCCTGGTGTCCTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGGCAGCTGGCTCTACACCCCAGCCCACCTTCCCCTGGTGTCCTC  347

seq1  TTCCCCCAACACTAGGCACTGCCTATCACACTTGGCTTAGCTATGTGTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCAACACTAGGCACTGCCTATCACACTTGGCTTAGCTATGTGTGA  397

seq1  TTCTAACTGTCGGACTCCAAAACAGCGATGCAGATGAAGAACCACCTCTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTGTCGGACTCCAAAACAGCGATGCAGATGAAGAACCACCTCTG  447

seq1  TCTTGTTCCCTGCTAATCCATGCCGTCATCCCCAGCAGAGTCTGCCATGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCCCTGCTAATCCATGCCGTCATCCCCAGCAGAGTCTGCCATGA  497

seq1  CGGATGCTTCACAAATACTAGTTGAGGGAGAGATGGGTGAAGCAGTGCCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGCTTCACAAATACTAGTTGAGGGAGAGATGGGTGAAGCAGTGCCC  547

seq1  TGGGTGGGTCTTTGCAGATGATGTGAAAAGATGGGAGGGAATTTTTCCTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGTCTTTGCAGATGATGTGAAAAGATGGGAGGGAATTTTTCCTA  597

seq1  CCCAGGTGGGCGATGAACTCCTGGGAGATGTCCATCCAGCGAAGCAGCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGGGCGATGAACTCCTGGGAGATGTCCATCCAGCGAAGCAGCTG  647

seq1  CTGCAGGAAGCCGAAGGCAAATCGCTTCTCAATGGAGGATGTGTCCAGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGAAGCCGAAGGCAAATCGCTTCTCAATGGAGGATGTGTCCAGTT  697

seq1  CCATGTCCTTAAGACCCCTGTGTGGAGAGGCAGAGACAGTCAGCTCAGAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCCTTAAGACCCCTGTGTGGAGAGGCAGAGACAGTCAGCTCAGAC  747

seq1  ACCGGCCTTGCCCTATTCCACACACCTTTCTGGTCAGTCTATGCACACTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGCCTTGCCCTATTCCACACACCTTTCTGGTCAGTCTATGCACACTG  797

seq1  CCCACTTGCAGGTCCTTAGGTTGTTCTCCGAGTCTAGCTTCCCCATGCTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTGCAGGTCCTTAGGTTGTTCTCCGAGTCTAGCTTCCCCATGCTT  847

seq1  CTCCCCTTTGGCCTTTAGCATATCTGCTGGCCGCGACTTCACCGCCCAGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTTGGCCTTTAGCATATCTGCTGGCCGCGACTTCACCGCCCAGT  897

seq1  AGGAGGTCCGCTTGCTGCTTTCAGGTCTACCCCTTGGCTTCCTTATGGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTCCGCTTGCTGCTTTCAGGTCTACCCCTTGGCTTCCTTATGGCC  947

seq1  CCGCCTCCGTCCCAAGCCCCGCCCCCAAGGCGTTCCTTCTGCCCCTGCTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTCCGTCCCAAGCCCCGCCCCCAAGGCGTTCCTTCTGCCCCTGCTT  997

seq1  GAAGTTGCTTCTGCCCAGGTTCAGGAATTC  1025
      ||||||||||||||||||||||||||||||
seq2  GAAGTTGCTTCTGCCCAGGTTCAGGAATTC  1027