BAC Information

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BAC

Clone NameB6Ng01-170I04
Chromosome7 (Build37)
Map Location 51,525,900 - 51,676,415
singlet/doubletdoublet
Overlap geneEG638453, Clec11a, Shank1, 1700008O03Rik, Syt3
Upstream geneZfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854
Downstream geneLrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170I04.bB6Ng01-170I04.g
ACCDH961205DH961206
length1,1081,170
definitionDH961205|Mus musculus domesticus DNA, BAC clone: B6Ng01-170I04, 5' end.DH961206|Mus musculus domesticus DNA, BAC clone: B6Ng01-170I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,525,900 - 51,527,003)(51,675,229 - 51,676,415)
sequence
gaattctttaataatcaattcatatctggttccccattgtctctgtctta
gggtttccattgctgtgaacagacaccatgaccaaggcaactcttataag
gacaacgtttacaggcttataggttctgaggttcagtccaatttcatcat
ggcaggaagcatggcaggcaggcatgacacgggaggtggagctgagagtt
ccacatcttggtccgaaggcaagcaggaacagactttcttccaggcagct
aggaggagggtctcaaagcccaccccgacagtgacacacttcctccaaca
aggccacacctccaaatagtgccactcactgggccaagcatcttcaagtc
agcccagcccagcaggaagcttcagcataggcttgcatggtggaattcac
actctggagtctaaagaatctgttcctcagagatgaggaagattcgaacc
ggggttcttcaccagagcccgtcaggaccccaggggcagagagagcactg
gatagagaatctctgtagcttactgactcacacgccccaccccctttggc
tgtctgtgttctggcccaatatacacatctcagagaccctctttacaagt
ctggccaactcaagccctcaaggtttcccactaaatgccacctcagaaga
ggtgggcacccctctcagcccttcactgaaacccctttctggcattaaaa
aaaatcacattattttgtgtacatatatgtgaatgtgtatgtgtgtgtgt
gtacagaggtttagacaattttagacaattttcattagtcagtagttctc
tccttctaccatgtttgtccatacccttgaaacactttcacacacacaca
ataaaaggagggatatgatttgtcaacaggatctagaatcaccagggaga
tgggttcacacatacctgtgggagactggcttgattctgttgaggtgaga
agagccatcttaattatgggcagcccttcagactgtgggcagccatctta
actattggcagaactccagattgtgggaagccatcttaatattgggcagc
aagtcgtttagaaagcttgaactaacaccacgcattttgtttggctcctg
tttcttga
gaattctctttcctcttgcccaggtccactccatcatccatccccacagt
actacagacaatatgtattcatttccaacagtcccttcccaccatcactt
ctgctacctcagtatcctaaagccagctgcaggtctcctggctggcctga
tcatgggcactgtcacatccttccaggccagcctctgcagggtagctgga
gtgcacttgatgacaaataattgccgtcatgctatctctaagggctgccc
actgtattcactaaatctaaccatcgttgtccccaccctggtccggtcct
gatactgctcaaccccatcacccttcgctcagactctggcttctcttgcc
ataggcagcttacacaccccagcacctctactccagttcctttttgccca
gtgccctctgtggaatggctctcactctcaggcctcagtctgaccaccct
ccccctccccccacccctggccatgcttcctcattgacaatggagtttcc
tgttcactttcttgtcactcaccaagaacccctcccctaggagtaaaacc
atgaacgaaggcctatcccatctcattggctgctcccttccctgagtcca
ggaaacatcaggccaattgcatgtccattaaatttgctgcacataataat
atatgtactatgtagacctatgtgccctcatagacaataccctcttgtct
acaatgtcgtcttgcagggggctagagatgatggcttagaaaaatgtcct
tgcagcacaagtacatacgttggattcctagcactcaagctaacactaga
tagatagatagatagatagatagatagatagatagagccagtcatggtgg
cctgcactagcagtccagcactggagaggtagagaagagtttcctggttc
actggccagtctgttacttaactggtgagaatccagaccagcaagaggcc
ctgtcttagaaacaggctgacagtgactgaggaatgacagtcaagggtgg
tcttctgcttttacacagttgcgacccacgaacaccacccaggtcttctc
ctcaccttaacagatattaaccacctccttgatgttctggggtgagggaa
gcttctgggtccctaagcctggggctctgtgaggaaggtgtgaaactggc
tgattaggggccccagacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_51525900_51527003
seq2: B6Ng01-170I04.b_46_1153

seq1  GAATTCTTTAATAATCAATTCATATCTGGTTCCCCATTGTCTCTGTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATAATCAATTCATATCTGGTTCCCCATTGTCTCTGTCTTA  50

seq1  GGGTTTCCATTGCTGTGAACAGACACCATGACCAAGGCAACTCTTATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCCATTGCTGTGAACAGACACCATGACCAAGGCAACTCTTATAAG  100

seq1  GACAACGTTTACAGGCTTATAGGTTCTGAGGTTCAGTCCAATTTCATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACGTTTACAGGCTTATAGGTTCTGAGGTTCAGTCCAATTTCATCAT  150

seq1  GGCAGGAAGCATGGCAGGCAGGCATGACACGGGAGGTGGAGCTGAGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAAGCATGGCAGGCAGGCATGACACGGGAGGTGGAGCTGAGAGTT  200

seq1  CCACATCTTGGTCCGAAGGCAAGCAGGAACAGACTTTCTTCCAGGCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCTTGGTCCGAAGGCAAGCAGGAACAGACTTTCTTCCAGGCAGCT  250

seq1  AGGAGGAGGGTCTCAAAGCCCACCCCGACAGTGACACACTTCCTCCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGGTCTCAAAGCCCACCCCGACAGTGACACACTTCCTCCAACA  300

seq1  AGGCCACACCTCCAAATAGTGCCACTCACTGGGCCAAGCATCTTCAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACACCTCCAAATAGTGCCACTCACTGGGCCAAGCATCTTCAAGTC  350

seq1  AGCCCAGCCCAGCAGGAAGCTTCAGCATAGGCTTGCATGGTGGAATTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCCCAGCAGGAAGCTTCAGCATAGGCTTGCATGGTGGAATTCAC  400

seq1  ACTCTGGAGTCTAAAGAATCTGTTCCTCAGAGATGAGGAAGATTCGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGAGTCTAAAGAATCTGTTCCTCAGAGATGAGGAAGATTCGAACC  450

seq1  GGGGTTCTTCACCAGAGCCCGTCAGGACCCCAGGGGCAGAGAGAGCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCTTCACCAGAGCCCGTCAGGACCCCAGGGGCAGAGAGAGCACTG  500

seq1  GATAGAGAATCTCTGTAGCTTACTGACTCACACGCCCCACCCCCTTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGAATCTCTGTAGCTTACTGACTCACACGCCCCACCCCCTTTGGC  550

seq1  TGTCTGTGTTCTGGCCCAATATACACATCTCAGAGACCCTCTTTACAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTTCTGGCCCAATATACACATCTCAGAGACCCTCTTTACAAGT  600

seq1  CTGGCCAACTCAAGCCCTCAAGGTTTCCCACTAAATGCCACCTCAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAACTCAAGCCCTCAAGGTTTCCCACTAAATGCCACCTCAGAAGA  650

seq1  GGTGGGCACCCCTCTCAGCCCTTCACTGAAACCCCTTTCTGGCATTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCACCCCTCTCAGCCCTTCACTGAAACCCCTTTCTGGCATTAAAA  700

seq1  AAAATCACATTATTTTGTGTACATATATGTGAATGTGTATGTGTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACATTATTTTGTGTACATATATGTGAATGTGTATGTGTGTGTGT  750

seq1  GTACAGAGG-TTAGACAA-TTTAGACAATTTTCAGTAGTCAGTAGTTCTC  798
      ||||||||| |||||||| ||||||||||||||| |||||||||||||||
seq2  GTACAGAGGTTTAGACAATTTTAGACAATTTTCATTAGTCAGTAGTTCTC  800

seq1  TCCTTCTACCATGTTTGTCCATACCCTTGAAACACTTTCACACACACACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTACCATGTTTGTCCATACCCTTGAAACACTTTCACACACACACA  850

seq1  ATAAAAGGAGGGATATGAATTGTCAACAGGATCTAGAATCACCAGGGAGA  898
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATAAAAGGAGGGATATGATTTGTCAACAGGATCTAGAATCACCAGGGAGA  900

seq1  TGGGTTCACACATACCTGTGGGAGACTGGCTTGATTCTGTTGAGGTGAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCACACATACCTGTGGGAGACTGGCTTGATTCTGTTGAGGTGAGA  950

seq1  AGAGCCATCTTAACTATGGGCAGCCCTTCAGACTGTGGGCAGCCATCTTA  998
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAGCCATCTTAATTATGGGCAGCCCTTCAGACTGTGGGCAGCCATCTTA  1000

seq1  ACTATGGGCAGACCTCCAGACTGTGGGAAGCCATCTTAACTATGGGCAGC  1048
      ||||| |||||| ||||||| ||||||||||||||||||   ||||||||
seq2  ACTATTGGCAGAACTCCAGATTGTGGGAAGCCATCTTAATATTGGGCAGC  1050

seq1  AAGTCGTTGAG-AAGC-TGAGCTGAGCACCA-GCATTTTGTTTGTCTCCT  1095
      |||||||| || |||| ||| || | ||||| |||||||||||| |||||
seq2  AAGTCGTTTAGAAAGCTTGAACT-AACACCACGCATTTTGTTTGGCTCCT  1099

seq1  GTTTCTTGA  1104
      |||||||||
seq2  GTTTCTTGA  1108

seq1: chr7_51675229_51676415
seq2: B6Ng01-170I04.g_70_1239 (reverse)

seq1  GTGTCTTGTGTGGCCCCTCAAAATCAGCCAGGTCTCACACCTACCTCACA  50
      |||||   || |||||||   ||||||||| || |||||||| |||||||
seq2  GTGTC---TGGGGCCCCT---AATCAGCCA-GTTTCACACCTTCCTCACA  43

seq1  GAGCCCCCAGGGCCTAAGAGAACACAGAAGCTTTCCTCACACCCAGAACA  100
      ||| |||||||  || || | || ||||||||| |||||| |||||||||
seq2  GAG-CCCCAGG--CTTAG-GGACCCAGAAGCTTCCCTCAC-CCCAGAACA  88

seq1  TTCAAGGAAAGTGGTTAATATCTTGTTAAGTTG-GGAGATGACCTGTGT-  148
       |||||| | |||||||||||| ||||||| || ||||| |||||| || 
seq2  -TCAAGG-AGGTGGTTAATATC-TGTTAAGGTGAGGAGAAGACCTGGGTG  135

seq1  GTGTTCGTGGGTTCGCACCTGTGTGAAAGGCAG-AGA-CACCCTTGGCTG  196
      ||||||||||| ||||| |||||| ||| |||| ||| |||||||| |||
seq2  GTGTTCGTGGG-TCGCAACTGTGT-AAAAGCAGAAGACCACCCTTGACTG  183

seq1  TCATTCCTCAGTCACTGTCAGCCTTGTTTCTTAAGACAGGGCCTCTTGCT  246
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  TCATTCCTCAGTCACTGTCAGCC-TGTTTC-TAAGACAGGGCCTCTTGCT  231

seq1  GGTCTGGATTCTCACCAGTTAAGTAAACAGACTGGCCAGTGAACCAGGAA  296
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGTCTGGATTCTCACCAGTTAAGT-AACAGACTGGCCAGTGAACCAGGAA  280

seq1  ACTCTTCTCTACCTCTCCAGTGCTGGGACTGCTAGTGCAGGCCACCATGA  346
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTCTTCTCTACCTCTCCAGTGCT-GGACTGCTAGTGCAGGCCACCATGA  329

seq1  CTGGCTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAGTGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAGTGTT  379

seq1  AGCTTGAGTGCTAGGAATCCAACGTATGTACTTGTGCTTGCAAGGACATT  446
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGCTTGAGTGCTAGGAATCCAACGTATGTACTTGTGC-TGCAAGGACATT  428

seq1  TTTCTAAGCCATCATCTCTAG-CCCCTGCAAGACGACATTGTAGACAAGA  495
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTCTAAGCCATCATCTCTAGCCCCCTGCAAGACGACATTGTAGACAAGA  478

seq1  GGGTATTGTCTATGAGGGCACATAGGTCTACATAGTACATATATTATTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTGTCTATGAGGGCACATAGGTCTACATAGTACATATATTATTAT  528

seq1  GTGCAGCAAATTTAATGGACATGCAATTGGCCTGATGTTTCCTGGACTCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCAAATTTAATGGACATGCAATTGGCCTGATGTTTCCTGGACTCA  578

seq1  GGGAAGGGAGCAGCCAATGAGATGGGATAGGCCTTCGTTCATGGTTTTAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGAGCAGCCAATGAGATGGGATAGGCCTTCGTTCATGGTTTTAC  628

seq1  TCCTAGGGGAGGGGTTCTTGGTGAGTGACAAGAAAGTGAACAGGAAACTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGGGAGGGGTTCTTGGTGAGTGACAAGAAAGTGAACAGGAAACTC  678

seq1  CATTGTCAATGAGGAAGCATGGCCAGGGGTGGGGGGAGGGGGAGGGTGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCAATGAGGAAGCATGGCCAGGGGTGGGGGGAGGGGGAGGGTGGT  728

seq1  CAGACTGAGGCCTGAGAGTGAGAGCCATTCCACAGAGGGCACTGGGCAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAGGCCTGAGAGTGAGAGCCATTCCACAGAGGGCACTGGGCAAA  778

seq1  AAGGAACTGGAGTAGAGGTGCTGGGGTGTGTAAGCTGCCTATGGCAAGAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTGGAGTAGAGGTGCTGGGGTGTGTAAGCTGCCTATGGCAAGAG  828

seq1  AAGCCAGAGTCTGAGCGAAGGGTGATGGGGTTGAGCAGTATCAGGACCGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGTCTGAGCGAAGGGTGATGGGGTTGAGCAGTATCAGGACCGG  878

seq1  ACCAGGGTGGGGACAACGATGGTTAGATTTAGTGAATACAGTGGGCAGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGTGGGGACAACGATGGTTAGATTTAGTGAATACAGTGGGCAGCC  928

seq1  CTTAGAGATAGCATGACGGCAATTATTTGTCATCAAGTGCACTCCAGCTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGATAGCATGACGGCAATTATTTGTCATCAAGTGCACTCCAGCTA  978

seq1  CCCTGCAGAGGCTGGCCTGGAAGGATGTGACAGTGCCCATGATCAGGCCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGAGGCTGGCCTGGAAGGATGTGACAGTGCCCATGATCAGGCCA  1028

seq1  GCCAGGAGACCTGCAGCTGGCTTTAGGATACTGAGGTAGCAGAAGTGATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAGACCTGCAGCTGGCTTTAGGATACTGAGGTAGCAGAAGTGATG  1078

seq1  GTGGGAAGGGACTGTTGGAAATGAATACATATTGTCTGTAGTACTGTGGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGGGACTGTTGGAAATGAATACATATTGTCTGTAGTACTGTGGG  1128

seq1  GATGGATGATGGAGTGGACCTGGGCAAGAGGAAAGAGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGATGGAGTGGACCTGGGCAAGAGGAAAGAGAATTC  1170