BAC Information

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BAC

Clone NameB6Ng01-170M09
Chromosome7 (Build37)
Map Location 52,892,706 - 53,028,910
singlet/doubletdoublet
Overlap geneRasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1
Upstream geneMyh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1
Downstream geneEG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170M09.bB6Ng01-170M09.g
ACCDH961401DH961402
length1,144425
definitionDH961401|Mus musculus domesticus DNA, BAC clone: B6Ng01-170M09, 5' end.DH961402|Mus musculus domesticus DNA, BAC clone: B6Ng01-170M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,892,706 - 52,893,886)(53,028,480 - 53,028,910)
sequence
gaattcactagtctggccttgagctcacaaatgagtcacctacccctgtc
ttctgagttgctgggactaaaggtggtcacgagcacactaggcctctact
tttgtctgcacgtgtatatatgtgcaccatgaccatgacgtgccagaagt
ggagggcagctcttctgaaatgggacttacaggccacgtaggtgctggga
agcaaactagttctcagctgggtcctctgcaagagcagcaattgttctta
actgctaagccttcaccccaggcccttcacttcactgatttctatcttat
tacagtactggggattgaacccagagagttgcatatgccaggcaaacact
gccgctgacctgcatctccaagacccctttttactttttaattttgagat
aagagtttcaccatgtttcccaacctggccttgtactttgaatcctcttg
cctcaacctcctaagaaactgggatggctggcctgccctatgggacccag
ctgtgaccacagacgtctaacttggggacttcccctaggcttcatggagc
agcttacggactgactaccccaccctgactccagctcagctccaccatct
cctcagccactaccagttgggtcctggccgtggtcccccaccagcctggg
acccaccacctgcagagcgggatgctgtggacacaggtgtgcagatccgg
gctaacgaacattgagatgtcttctttatttgagacctaagagtccctgt
tcccagcccttcccactttcagttcccagggttcagatgccctctctgaa
gggcttaagactggctgcaattataacagtagcagggcttgcttactttg
cggtccccttcagtaagttaagaagagttcaacatttcattgttttttta
cttagacttaatctcttagcctcgtctcccccttcttgcctaacccaact
aacagagggatagtttctccaatcctcagaatctcccaagttcccagccc
atcctcaagttccagggtacctggaacctatttcctggaaagagcccttt
ttcctagtttctctgcctttcaagaaggattccctcctggaagcccggcg
tctctgaacctctggaaataggcggggcctgccacctccagagt
ctttgcaccatcctaggctaggctgatgcacggccctctccgaagctgct
tgatcagccccacacatggtggctgcattccgaaagcaagacacaaggag
gtgatatgtctttttaaagttttgtatcatctgtgaaatgaaagtaacag
ccttccaggcaggagtttcaatgatggagggaattaagtagtctgcagcc
atccccaggcaaatgattccgtgaatgccgccgctgtgagaggtaggaac
ggtgttagggaggtcactgcctcacacctggagttccaacacttagaaag
ccgaggcagggagggtgctacaagtttgaaggtagcctgggctacaaagt
gagtccttgtttatttcttttgtcgattttattttattgtatgtatgtat
gtatgtatgtatgtatgtatgtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52892706_52893886
seq2: B6Ng01-170M09.b_48_1187

seq1  TCACTAGTCTGGCCTTGAGCTCACAAATGAGTCACCTACCCCTGTCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGTCTGGCCTTGAGCTCACAAATGAGTCACCTACCCCTGTCTTCT  50

seq1  GAGTTGCTGGGACTAAAGGTGGTCACGAGCACACTAGGCCTCTACTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCTGGGACTAAAGGTGGTCACGAGCACACTAGGCCTCTACTTTTG  100

seq1  TCTGCACGTGTATATATGTGCACCATGACCATGACGTGCCAGAAGTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACGTGTATATATGTGCACCATGACCATGACGTGCCAGAAGTGGAG  150

seq1  GGCAGCTCTTCTGAAATGGGACTTACAGGCCACGTAGGTGCTGGGAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTCTTCTGAAATGGGACTTACAGGCCACGTAGGTGCTGGGAAGCA  200

seq1  AACTAGTTCTCAGCTGGGTCCTCTGCAAGAGCAGCAATTGTTCTTAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTTCTCAGCTGGGTCCTCTGCAAGAGCAGCAATTGTTCTTAACTG  250

seq1  CTAAGCCTTCACCCCAGGCCCTTCACTTCACTGATTTCTATCTTATTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCTTCACCCCAGGCCCTTCACTTCACTGATTTCTATCTTATTACA  300

seq1  GTACTGGGGATTGAACCCAGAGAGTTGCATATGCCAGGCAAACACTGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGGATTGAACCCAGAGAGTTGCATATGCCAGGCAAACACTGCCG  350

seq1  CTGACCTGCATCTCCAAGACCCCTTTTTACTTTTTAATTTTGAGATAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGCATCTCCAAGACCCCTTTTTACTTTTTAATTTTGAGATAAGA  400

seq1  GTTTCACCATGTTTCCCAACCTGGCCTTGTACTTTGAATCCTCTTGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACCATGTTTCCCAACCTGGCCTTGTACTTTGAATCCTCTTGCCTC  450

seq1  AACCTCCTAAGAAACTGGGATGGCTGGCCTGCCCTATGGGACCCAGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCTAAGAAACTGGGATGGCTGGCCTGCCCTATGGGACCCAGCTGT  500

seq1  GACCACAGACGTCTAACTTGGGGACTTCCCCTAGGCTTCATGGAGCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGACGTCTAACTTGGGGACTTCCCCTAGGCTTCATGGAGCAGCT  550

seq1  TACGGACTGACTACCCCACCCTGACTCCAGCTCAGCTCCACCATCTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGACTGACTACCCCACCCTGACTCCAGCTCAGCTCCACCATCTCCTC  600

seq1  AGCCACTACCAGTTGGGTCCTGGCCGTGGTCCCCCACCAGCCTGGGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTACCAGTTGGGTCCTGGCCGTGGTCCCCCACCAGCCTGGGACCC  650

seq1  ACCACCTGCAGAGCGGGATGCTGTGGACACAGGTGTGCAGATCCGGGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGCAGAGCGGGATGCTGTGGACACAGGTGTGCAGATCCGGGCTA  700

seq1  ACGAACATTGAGATGTCTTCTTTATTTGAGACCTAAGAGTCCCTGTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACATTGAGATGTCTTCTTTATTTGAGACCTAAGAGTCCCTGTTCCC  750

seq1  AGCCCTTCCCACTTTCAGTTCCCAGGGTTCAGATGCCCTCTCTGAAGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTCCCACTTTCAGTTCCCAGGGTTCAGATGCCCTCTCTGAAGGGC  800

seq1  TTAAAGACTGGCTGCAATTATAACAGTAGCAGGGCTTGCTTACTTTGCGG  850
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-AAGACTGGCTGCAATTATAACAGTAGCAGGGCTTGCTTACTTTGCGG  849

seq1  TCCCCTTCAGTAAGTTAAGAAGAGTTCAAACATTTCATTGTTTTTTTTAC  900
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  TCCCCTTCAGTAAGTTAAGAAGAGTTC-AACATTTCATTG-TTTTTTTAC  897

seq1  TTAGACTTAATCTCTTAGCCTCGTCTCTCCACATCTCTTGCCCTAACCCA  950
      ||||||||||||||||||||||||||| ||     ||||| |||||||||
seq2  TTAGACTTAATCTCTTAGCCTCGTCTCCCC---CTTCTTG-CCTAACCCA  943

seq1  ACTAACAGAGGGATAGGTTTCT-CAATCCTCAGAAATCTCCCAAGGTTCC  999
      ||||||||||||||| |||||| |||||||||| |||||||||||  | |
seq2  ACTAACAGAGGGATA-GTTTCTCCAATCCTCAG-AATCTCCCAAG--TTC  989

seq1  CCAGCCCATCCTCAAGGTTCCAGGGTACCTGGGACCCTATTTTCCTGGTA  1049
      ||||||||||||||| |||||||||||||| ||| |||| |||||||| |
seq2  CCAGCCCATCCTCAA-GTTCCAGGGTACCT-GGAACCTA-TTTCCTGGAA  1036

seq1  ATGGGCCTTTTTTCCCTAGTTTTCTTGGCTTTTCAAGATAGGATTTCTCT  1099
      |  | |||||||  ||||| |||||  || |||||||| |||||| |   
seq2  AGAGCCCTTTTT--CCTAG-TTTCTCTGCCTTTCAAGA-AGGATTCCCTC  1082

seq1  CTGTAGCCCTGGCTGTCT-TGTAACTCTGTAGATCAGGCTGGCCTCGAAC  1148
      ||| |  || ||| |||| || | ||||| | || |||| ||        
seq2  CTGGAAGCCCGGC-GTCTCTGAACCTCTGGAAAT-AGGCGGG--------  1122

seq1  TCAAAGAGATCCACCTGCCTCTGCCTCCAGAGT  1181
                   ||||||    ||||||||||
seq2  ------------GCCTGCC---ACCTCCAGAGT  1140

seq1: chr7_53028480_53028910
seq2: B6Ng01-170M09.g_68_498 (reverse)

seq1  AATACATACATACATACATACATACATACATACATACAATAAAATAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATACATACATACATACATACATACATACATACAATAAAATAAAAT  50

seq1  CGACAAAAGAAATAAACAAGGACTCACTTTGTAGCCCAGGCTACCTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAAAAGAAATAAACAAGGACTCACTTTGTAGCCCAGGCTACCTTCAA  100

seq1  ACTTGTAGCACCCTCCCTGCCTCGGCTTTCTAAGTGTTGGAACTCCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAGCACCCTCCCTGCCTCGGCTTTCTAAGTGTTGGAACTCCAGGT  150

seq1  GTGAGGCAGTGACCTCCCTAACACCGTTCCTACCTCTCACAGCGGCGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCAGTGACCTCCCTAACACCGTTCCTACCTCTCACAGCGGCGGCA  200

seq1  TTCACGGAATCATTTGCCTGGGGATGGCTGCAGACTACTTAATTCCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGGAATCATTTGCCTGGGGATGGCTGCAGACTACTTAATTCCCTCC  250

seq1  ATCATTGAAACTCCTGCCTGGAAGGCTGTTACTTTCATTTCACAGATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGAAACTCCTGCCTGGAAGGCTGTTACTTTCATTTCACAGATGAT  300

seq1  ACAAAACTTTAAAAAGACATATCACCTCCTTGTGTCTTGCTTTCGGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTTTAAAAAGACATATCACCTCCTTGTGTCTTGCTTTCGGAATG  350

seq1  CAGCCACCATGTGTGGGGCTGATCAAGCAGCTTCGGAGAGGGCCGTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCATGTGTGGGGCTGATCAAGCAGCTTCGGAGAGGGCCGTGCAT  400

seq1  CAGCCTAGCCTAGGATGGTGCAGAGGAATTC  431
      |||||||||||||||||||||| ||||||||
seq2  CAGCCTAGCCTAGGATGGTGCAAAGGAATTC  431