BAC Information

Click to search

BAC

Clone NameB6Ng01-171C20
Chromosome7 (Build37)
Map Location 49,567,959 - 49,569,073
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668565, AI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2
Downstream geneLOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171C20.bB6Ng01-171C20.g
ACCGA000129GA000130
length1,1211,132
definitionB6Ng01-171C20.b B6Ng01-171C20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttgcttagctctgaaccccatttttttaatggggttatttgaa
tttctggagtctagcttcttgagctctttgtatatattggatattagtcc
cctatcagatttaggattggtaaaaatcctttcccaatctgttggtggcc
tttttgtcttattgacagtgtcttttgcctttcagaagctttgcaatttt
atgcggttccatttgtcaattcttgatcttacagcataacaaatctaact
ctttagtcactttctgtgtaaaacaatagtaaaaattacaataagaacaa
caaataacagcaacaacaaaaccctcatacctgaaataaagatgaaggga
atgtgaggaatccaagttttaagtgaatactgcatattgatgaatattgt
ttaaaaatataaagaaatgatgttaaaaacactgtgtccaggatgaaatg
aaatagtccaataatttgtgggaaaggttattgtcaccaccactattaaa
tttatcagttaaccttcccatatttatgtattagcgtttatttccattac
cctaattctaatggaagttgaacacttttcatgtatcttaacttgttcac
tccataatttttggagagcaaatgatataattttgttcaccttcttaata
ttcatccttttcactcatttgtggttgttcattatatttggtagctagga
ctcttttctgggtatctggtattctgatagaatactggaggtattctcta
ttgtttatgtttccagctagcatacatttattttcaagggtttaataagg
ccattttattttttattagatatttttctgtatttacgtttaaaatatta
tcccctttcctagtttcccctttgaaaatcccttatcctttcccccctcc
ccctgttccccaattccaatcactcctgcttcctcaccacaggcactcct
cctctactggggcaatagaacttttctcaggaccaagggtttctcccact
gggtgaccaactaacattctctgctacatatgcagctagagtcacaggtc
cctctgtgtgttcttgattggtggttaagtacaagttgaactcagtgatt
actggcttaggttcaatattg
gaattcagaacttttcagctggggaacgagagtaccagtgagtatagctt
tacgaggtaagtctgatcttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaatatgtttggccttgaattttttctggtgttagg
agcccttttgttccttttcacatgttatcaagtgattaagatagggctga
aaattctagaggaaattcaggacaagctatcagaagtaaagcggggagag
agagtaggaacaaagaggaaatatggtacacaaaataagtatacaggcct
ttccaagggtcttgaacccgaggaaaagttaaggttaggtaggaatacct
ggagagagattagaagaaaaagaggaaaaagggaaaagaagaaagatcaa
ttagcggaggtctctaggaaaaggagcctgtgctcatcgctggatgggct
cggggagccagctcttggtagctctgaatcagatgatgaattctcctctg
aagaaacagactgggaggaagaagcagctcattatgagaaaaaagggtac
cagccaggtaaagtgctagctaatcagttaaggaagccaaaagcagctgg
cgaaggccagtttgctgattggcctcagggcagtcggcttcaaggtccgc
cctatgcggagtccccgccctgcgtagtgcgtcagccctgcgcagagagg
cagtgcgcagagaggcagtgcgcagactcattcattcccagagaggaaca
aaggaaaatacaacaggcatttccggtctttgaaggagccgagggtgggc
gtgtccacgctccgggtagaatacttacaaattaagaaattgccgagtcg
gtccgtaaatacggaacccaatgctaattttaccttggtgcagttagaca
ggcttgccggcatggcactaactctgccgactggccaaacggttgtaaaa
gccgctcctccttagtatggcaaatatatgggaatgggagagcgcttggc
acgagctgcacaagcgcaggtcgagcacgcagctgcttgactcgagcgag
gattgacttggactggttacgtcagagcttattcgctgatcgacactaca
tgggactagccgaattctgccgcatttgaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49567959_49569073
seq2: B6Ng01-171C20.b_44_1164 (reverse)

seq1  CAATA-TGAA-CTAA-CCAGTAACCACTGAGCTC-ACTTGTACTAAACCA  46
      ||||| |||| |||| ||||||| ||||||| || ||||||||| |||||
seq2  CAATATTGAACCTAAGCCAGTAATCACTGAGTTCAACTTGTACTTAACCA  50

seq1  CCAATCAAAGAAAACACACAGAGGGACTTGTGGCTCTAGCTGCATATGTA  96
      |||||||   | ||||||||||||||| |||| |||||||||||||||||
seq2  CCAATCA---AGAACACACAGAGGGACCTGTGACTCTAGCTGCATATGTA  97

seq1  GCAGAGAATGGTTTAGTTGGTCA-CCAGTGGGAGAAACCCTTGGTCTTGA  145
      ||||||||||  ||||||||||| |||||||||||||||||||||| |||
seq2  GCAGAGAATG--TTAGTTGGTCACCCAGTGGGAGAAACCCTTGGTCCTGA  145

seq1  G-AAAGTTCTA-TGCCCCAGTAGAGGA-GAGTGCCTGT-GTGAGGAAGCA  191
      | ||||||||| ||||||||||||||| |||||||||| |||||||||||
seq2  GAAAAGTTCTATTGCCCCAGTAGAGGAGGAGTGCCTGTGGTGAGGAAGCA  195

seq1  GGAGTGATTGG-ATTGGGGAACAGGGGGAGGGGGGAAAGGATAAGGGATT  240
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGATTGGAATTGGGGAACAGGGGGAGGGGGGAAAGGATAAGGGATT  245

seq1  TTCAAAGGGGAAACTAGGAAAGGGGATAATATTTTAAACGTAAATACAG-  289
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCAAAGGGGAAACTAGGAAAGGGGATAATATTTTAAACGTAAATACAGA  295

seq1  AAAATATCTAATAAAAAATAAAATGGCCTTATTAAACCCTTGAAAATAAA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCTAATAAAAAATAAAATGGCCTTATTAAACCCTTGAAAATAAA  345

seq1  TGTATGCTAGCTGGAAACATAAACAATAGAGAATACCTCCAGTATTCTAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCTAGCTGGAAACATAAACAATAGAGAATACCTCCAGTATTCTAT  395

seq1  CAGAATACCAGATACCCAGAAAAGAGTCCTAGCTACCAAATATAATGAAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATACCAGATACCCAGAAAAGAGTCCTAGCTACCAAATATAATGAAC  445

seq1  AACCACAAATGAGTGAAAAGGATGAATATTAAGAAGGTGAACAAAATTAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAATGAGTGAAAAGGATGAATATTAAGAAGGTGAACAAAATTAT  495

seq1  ATCATTTGCTCTCCAAAAATTATGGAGTGAACAAGTTAAGATACATGAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGCTCTCCAAAAATTATGGAGTGAACAAGTTAAGATACATGAAA  545

seq1  AGTGTTCAACTTCCATTAGAATTAGGGTAATGGAAATAAACGCTAATACA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCAACTTCCATTAGAATTAGGGTAATGGAAATAAACGCTAATACA  595

seq1  TAAATATGGGAAGGTTAACTGATAAATTTAATAGTGGTGGTGACAATAAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGGGAAGGTTAACTGATAAATTTAATAGTGGTGGTGACAATAAC  645

seq1  CTTTCCCACAAATTATTGGACTATTTCATTTCATCCTGGACACAGTGTTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCACAAATTATTGGACTATTTCATTTCATCCTGGACACAGTGTTT  695

seq1  TTAACATCATTTCTTTATATTTTTAAACAATATTCATCAATATGCAGTAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATCATTTCTTTATATTTTTAAACAATATTCATCAATATGCAGTAT  745

seq1  TCACTTAAAACTTGGATTCCTCACATTCCCTTCATCTTTATTTCAGGTAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAAAACTTGGATTCCTCACATTCCCTTCATCTTTATTTCAGGTAT  795

seq1  GAGGGTTTTGTTGTTGCTGTTATTTGTTGTTCTTATTGTAATTTTTACTA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTTGTTGTTGCTGTTATTTGTTGTTCTTATTGTAATTTTTACTA  845

seq1  TTGTTTTACACAGAAAGTGACTAAAGAGTTAGATTTGTTATGCTGTAAGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTACACAGAAAGTGACTAAAGAGTTAGATTTGTTATGCTGTAAGA  895

seq1  TCAAGAATTGACAAATGGAACCGCATAAAATTGCAAAGCTTCTGAAAGGC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATTGACAAATGGAACCGCATAAAATTGCAAAGCTTCTGAAAGGC  945

seq1  AAAAGACACTGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACACTGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGA  995

seq1  TTTTTACCAATCCTAAATCTGATAGGGGACTAATATCCAATATATACAAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCAATCCTAAATCTGATAGGGGACTAATATCCAATATATACAAA  1045

seq1  GAGCTCAAGAAGCTAGACTCCAGAAATTCAAATAACCCCATTAAAAAAAT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAAGAAGCTAGACTCCAGAAATTCAAATAACCCCATTAAAAAAAT  1095

seq1  GGGGTTCAGAGCTAAGCAAGGAATTC  1115
      ||||||||||||||||||||||||||
seq2  GGGGTTCAGAGCTAAGCAAGGAATTC  1121