BAC Information

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BAC

Clone NameB6Ng01-173H07
Chromosome7 (Build37)
Map Location 11,242,070 - 11,392,577
singlet/doubletdoublet
Overlap geneEG628596, Nlrp4b, LOC333184, V1re13, BQ559217
Upstream geneLOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1
Downstream geneLOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173H07.bB6Ng01-173H07.g
ACCGA001796GA001797
length1721,188
definitionB6Ng01-173H07.b B6Ng01-173H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,242,070 - 11,242,241)(11,391,408 - 11,392,577)
sequence
ttatatggatataatcctcagtgccagcaggaagcaggtcatcaccctta
cttgcatcagcaaaggggtcgaaagagtggaggttctggatagcggacat
acgataagattccttttcctcggtggaaacggcctgcggaaggcggctgc
gggagaaggcgggcgggggcgg
gaattctaatctgaggtgcctcataaagaaggagtccactacccagcttc
actatatttgttttttaacctgaaaaatttttgaaaaagctgaaaacaca
agctgtattattttcaccctacaaagacaggcaaaatttttagctgtgta
ttgttaagaaaggtgtatatttatatgattaaagaggtggagaaatggct
cagcacttaagagagtttacacatgcacacacacacacacacacacacag
agagagagagagagagagagagagagagagagagagagagagaaagagag
agagagaggtatatcttggtaaaggaacacaaaaaggctcttgaatttgc
aagaacacagatacttagggaaaatgtggatccttattgcctttcacgta
tcaagtatttcacggctcaagtgtccctcgttcatcacaaaggttactgg
tctcaagaatagtatcttaggacacaaagatatgcaatacatgtttacag
gcttggtctcagctcactccccaacaccaagtgaatacacaaggcacaag
aaagggccaaaggctttgaccactaaaacacccacctcactccaaataaa
ctgaggagtcgatatcacagtgccataggtttttctgggaagtctgaaga
gatctgagattttatttttatcggcatctgctttgtaaaacaatacctga
gataatactacgatgtaaatttgtagggagatgtggctgaagttttcctg
tgtgaacttaaaacaagatcccacccctaccacaacccaccccaaaccct
ggagttcttttctgggttaattttcagaggggaaataaggctgggtctct
ggctgctattgctcttcagatcacagggtatgctgtcataagaaggggtt
ggctagcttgcttgctttgctttgttttttttgttttaatagtcaagaca
cttgttgcagctttcccttttggtgtaggatcttgaagaagaacttgttc
ttgtgaacaaaagattccccctcactggtgccactctcaagaaattcttc
cttcagaagaagtcaccgaggaataactgagatcctgtgttgctgtgaat
ggtcttccttctcttgccaactggtaaggccttctggtcatcgtcagctt
tgatgcctgattgaagatgaccttgaaactgatgacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11242070_11242241
seq2: B6Ng01-173H07.b_49_220

seq1  TTATATGGATATAATCCTCAGTGCCAGCAGGAAGCAGGTCATCACCCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGGATATAATCCTCAGTGCCAGCAGGAAGCAGGTCATCACCCTTA  50

seq1  CTTGCATCAGCAAAGGGGTCGAAAGAGTGGAGGTTCTGGATAGCGGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATCAGCAAAGGGGTCGAAAGAGTGGAGGTTCTGGATAGCGGACAT  100

seq1  ACGATAAGATTCCTTTTCCTCGGTGGAAACGGCCTGCGGAAGGCGGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATAAGATTCCTTTTCCTCGGTGGAAACGGCCTGCGGAAGGCGGCTGC  150

seq1  GGGAGAAGGCGGGCGGGGGCGG  172
      ||||||||||||||||||||||
seq2  GGGAGAAGGCGGGCGGGGGCGG  172

seq1: chr7_11391408_11392577
seq2: B6Ng01-173H07.g_66_1253 (reverse)

seq1  AGGTCATCAGTCTC-AGCTCATCCCTCAATCA-GCATCAAAAGCTG-CAG  47
      ||||||||||| || || |||| | ||||||| ||||| ||||||| |  
seq2  AGGTCATCAGTTTCAAGGTCAT-CTTCAATCAGGCATC-AAAGCTGACGA  48

seq1  TGA-CAGAA-GCCCTACCAGTGTGGC-AGAGAAGGGAAGACCATTCACAG  94
      ||| ||||| ||| ||||||| |||| |||||| ||||||||||||||||
seq2  TGACCAGAAGGCCTTACCAGT-TGGCAAGAGAA-GGAAGACCATTCACAG  96

seq1  CCACACA-GATCTCAGTTA-TCCTCGGTGAACTCCTTCTG-AGGAAAGAT  141
      | ||||| ||||||||||| ||||||||| ||| |||||| |||||  ||
seq2  CAACACAGGATCTCAGTTATTCCTCGGTG-ACTTCTTCTGAAGGAAGAAT  145

seq1  TTCTT--GAGTGGAACCAGTGA-GGGGAATCTTTTG-TCACAAGA--CAG  185
      |||||  |||||| |||||||| ||||||||||||| ||||||||   ||
seq2  TTCTTGAGAGTGGCACCAGTGAGGGGGAATCTTTTGTTCACAAGAACAAG  195

seq1  GTCTTCTTCAGGAT-CTACACCAAA--GGGAAGCTGC-ACAAGTGTCTTG  231
       ||||||||| ||| ||||||||||  || ||||||| ||||||||||||
seq2  TTCTTCTTCAAGATCCTACACCAAAAGGGAAAGCTGCAACAAGTGTCTTG  245

seq1  ACTA-TAAAACAAAAAAA--CAAGC-AAGCAAGCAAGCTAGCCAACCCCT  277
      |||| |||||||||||||   |||| ||||||||||||||||||||||||
seq2  ACTATTAAAACAAAAAAAACAAAGCAAAGCAAGCAAGCTAGCCAACCCCT  295

seq1  TCCTATGACAGCATACCCTGTGATCTGAAGAGCAATAGCAGCCAGAGACC  327
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGACAGCATACCCTGTGATCTGAAGAGCAATAGCAGCCAGAGACC  345

seq1  CAGCCTTATTTCCCCTCTGAAAATTAACCCAGGAAAGAACTCCAGGGTTT  377
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGCCTTATTTCCCCTCTGAAAATTAACCCAGAAAAGAACTCCAGGGTTT  395

seq1  GGGGTGGGTTGTGGTAGGGGTGGGATCTTGTTTTAAGTTCACACAGGAAA  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGTTGTGGTAGGGGTGGGATCTTGTTTTAAGTTCACACAGGAAA  445

seq1  ACTTCAGCCACATCTCCCTACAAATTTACATCGTAGTATTATCTCAGGTA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGCCACATCTCCCTACAAATTTACATCGTAGTATTATCTCAGGTA  495

seq1  TTGTTTTACAAAGCAGATGCCGATAAAAATAAAATCTCAGATCTCTTCAG  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTACAAAGCAGATGCCGATAAAAATAAAATCTCAGATCTCTTCAG  545

seq1  ACTTCCCAGAAAAACCTATGGCACTGTGATATCGACTCCTCAGTTTATTT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCAGAAAAACCTATGGCACTGTGATATCGACTCCTCAGTTTATTT  595

seq1  GGAGTGAGGTGGGTGTTTTAGTGGTCAAAGCCTTTGGCCCTTTCTTGTGC  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGGTGGGTGTTTTAGTGGTCAAAGCCTTTGGCCCTTTCTTGTGC  645

seq1  CTTGTGTATTCACTTGGTGTTGGGGAGTGAGCTGAGACCAAGCCTGTAAA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTATTCACTTGGTGTTGGGGAGTGAGCTGAGACCAAGCCTGTAAA  695

seq1  CATGTATTGCATATCTTTGTGTCCTAAGATACTATTCTTGAGACCAGTAA  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTGCATATCTTTGTGTCCTAAGATACTATTCTTGAGACCAGTAA  745

seq1  CCTTTGTGATGAACGAGGGACACTTGAGCCGTGAAATACTTGATACGTGA  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGATGAACGAGGGACACTTGAGCCGTGAAATACTTGATACGTGA  795

seq1  AAGGCAATAAGGATCCACATTTTCCCTAAGTATCTGTGTTCTTGCAAATT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAATAAGGATCCACATTTTCCCTAAGTATCTGTGTTCTTGCAAATT  845

seq1  CAAGAGCCTTTTTGTGTTCCTTTACCAAGATATACCTCTCTCTCTCTCTT  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCCTTTTTGTGTTCCTTTACCAAGATATACCTCTCTCTCTCTCTT  895

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTG  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTG  945

seq1  TGTGTGTGTGTGTGTGTGCATGTGTAAACTCTCTTAAGTGCTGAGCCATT  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGCATGTGTAAACTCTCTTAAGTGCTGAGCCATT  995

seq1  TCTCCACCTCTTTAATCATATAAATATACACCTTTCTTAACAATACACAG  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACCTCTTTAATCATATAAATATACACCTTTCTTAACAATACACAG  1045

seq1  CTAAAAATTTTGCCTGTCTTTGTAGGGTGAAAATAATACAGCTTGTGTTT  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATTTTGCCTGTCTTTGTAGGGTGAAAATAATACAGCTTGTGTTT  1095

seq1  TCAGCTTTTTCAAAAATTTTTCAGGTTAAAAAACAAATATAGTGAAGCTG  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTTTCAAAAATTTTTCAGGTTAAAAAACAAATATAGTGAAGCTG  1145

seq1  GGTAGTGGACTCCTTCTTTATGAGGCACCTCAGATTAGAATTC  1170
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGGACTCCTTCTTTATGAGGCACCTCAGATTAGAATTC  1188