BAC Information

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BAC

Clone NameB6Ng01-173I16
Chromosome7 (Build37)
Map Location 78,339,880 - 78,425,526
singlet/doubletdoublet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535, Mctp2, LOC100042873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173I16.bB6Ng01-173I16.g
ACCGA001862GA001863
length1,090790
definitionB6Ng01-173I16.b B6Ng01-173I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,339,880 - 78,340,955)(78,424,956 - 78,425,526)
sequence
gaattctttgtttagccctgtaccccatgtttttcatggggttatttgat
tttctagagtacagcttcttgagttctttgtatatattggatgaatctca
attaaaaactacaaaatattcagatagattgtttttatagtgacactaac
agtgtgtgtgaaacaattcatgcttttattggggaaattgtcagtgtgta
cctttctccatgatcccagtagcagggaagagcactgctctgggaggagc
actgctcatggaggaggactgctcatggaggaggactgctcagggaggag
gactgctcatggaggaggactgctcatggaggaggcatgctcagatacaa
cacccaataattgaaatgagacatgtgaacagaaagagggaataaggata
tgggaacttgaacagcagctaaagacagggataaaaaggcaaagggagag
gggaggttgccttgggaacatactctgtagggagggtccatgtggatggt
aggcacaaaactcttctagggaccttgattcttgctatttggttcagaac
tatcagtgagcagtcatcatggcatacgggtaagtaatggtaaaatggtt
agatgtctttgctctgtctgctttggccatgagaaaactaagaagtcatg
aggcatctaactaaccagctaactcactgtgtcttgagattttgaccctt
gctgaatctcttcagggtcaggactacatgggataagggaactctacaca
cataggccaattacagaaccgcttctaggtttattattcttgggtttcgc
ttgggtttatgtctgagaggagagtagtcatcagaaccttgtactgtttc
agaggcccataatttttagtcagtgcttcacagtagtagtcttgagcctt
cctgtgagtacgcctgggaaaataattggtgggcattactgcgcatgccc
agtgaacttagatgtcatcttcacaaaagttgtatgctcctcagttacag
agaacataatcccacaacctccacccttccattaatagattgaattctct
tcttgcaaaaccaaactatctgtcccacaccgatcccacc

gaattcttgggatgatggagtgcacctttttaaaaatgacactcatgtgt
gtgtgacagaggtagagatagcatgtgagtgcaatgtccacagaggccag
aagagctagagttacagagagttgctcagcatgtatgggtcctaggaatt
aaactctggtccccttaaagagtaatgacactcttaactgctcagcagtc
tgtacagcttcccaattttttgagaggatcctcaaagcatagtaaatgaa
caccaaaaataaacaaatgagattttatcaagataaaaagctgctgtacc
acaagagaaacaatcatgggaaagaagaatcaccccagataatgaagaga
agacctgagaccatgactctgacaagggtttaatatccaaatcatgagaa
atcccaaaacctaaaaagcagaaaaggaaaaacacttatttaaaactgaa
attccagaaattcaatagcaaaacattgaaacaaaagaaaatatccatat
ttttaaattgaccaatacacctaaatgcacttgtctcttgcaaaggtata
cagatgacaatacacaacacacaggaacacacaaacaggcacacatccat
gcacaaacacacacatgcacacagagatagttattgaggaaatgcaaaca
caagctatgatgagctatcagcaataatacttcagtaataataatcaata
tgaagaaaaagaggaggaggaggaggaagaggaggagaaggaggagaaga
aaggtaagtgcctgtaaaagaaaaaggaattccctgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_78339880_78340955
seq2: B6Ng01-173I16.b_42_1131

seq1  GAATTCTTTGTTTAGCCCTGTACCCCATGTTTTTCATGGGGTTATTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCCCTGTACCCCATGTTTTTCATGGGGTTATTTGAT  50

seq1  TTTCTAGAGTACAGCTTCTTGAGTTCTTTGTATATATTGGATGAATCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGAGTACAGCTTCTTGAGTTCTTTGTATATATTGGATGAATCTCA  100

seq1  ATTAAAAACTACAAAATATTCAGATAGATTGTTTTTATAGTGACACTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACTACAAAATATTCAGATAGATTGTTTTTATAGTGACACTAAC  150

seq1  AGTGTGTGTGAAACAATTCATGCTTTTATTGGGGAAATTGTCAGTGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGAAACAATTCATGCTTTTATTGGGGAAATTGTCAGTGTGTA  200

seq1  CCTTTCTCCATGATCCCAGTAGCAGGGAAGAGCACTGCTCTGGGAGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCATGATCCCAGTAGCAGGGAAGAGCACTGCTCTGGGAGGAGC  250

seq1  ACTGCTCATGGAGGAGGACTGCTCATGGAGGAGGACTGCTCAGGGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCATGGAGGAGGACTGCTCATGGAGGAGGACTGCTCAGGGAGGAG  300

seq1  GACTGCTCATGGAGGAGGACTGCTCATGGAGGAGGCATGCTCAGATACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTCATGGAGGAGGACTGCTCATGGAGGAGGCATGCTCAGATACAA  350

seq1  CACCCAATAATTGAAATGAGACATGTGAACAGAAAGAGGGAATAAGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAATAATTGAAATGAGACATGTGAACAGAAAGAGGGAATAAGGATA  400

seq1  TGGGAACTTGAACAGCAGCTAAAGACAGGGATAAAAAGGCAAAGGGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTTGAACAGCAGCTAAAGACAGGGATAAAAAGGCAAAGGGAGAG  450

seq1  GGGAGGTTGCCTTGGGAACATACTCTGTAGGGAGGGTCCATGTGGATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTTGCCTTGGGAACATACTCTGTAGGGAGGGTCCATGTGGATGGT  500

seq1  AGGCACAAAACTCTTCTAGGGACCTTGATTCTTGCTATTTGGTTCAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAAAACTCTTCTAGGGACCTTGATTCTTGCTATTTGGTTCAGAAC  550

seq1  TATCAGTGAGCAGTCATCATGGCATACGGGTAAGTAATGGTAAAATGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGAGCAGTCATCATGGCATACGGGTAAGTAATGGTAAAATGGTT  600

seq1  AGATGTCTTTGCTCTGTCTGCTTTGGCCATGAGAAAACTAAGAAGTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCTTTGCTCTGTCTGCTTTGGCCATGAGAAAACTAAGAAGTCATG  650

seq1  AGGCATCTAACTAACCAGCTAACTCACTGTGTCTTGAGATTTTGACCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCTAACTAACCAGCTAACTCACTGTGTCTTGAGATTTTGACCCTT  700

seq1  GCTGAATCTCTTCAGGGTCAGGACTACATGGGATAAGGGAACTCTACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATCTCTTCAGGGTCAGGACTACATGGGATAAGGGAACTCTACACA  750

seq1  CATAGGCCAATTACAGAACCGCTTCTAGGTTTATTATTCTTGGGTTTCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCCAATTACAGAACCGCTTCTAGGTTTATTATTCTTGGGTTTCGC  800

seq1  TTGGGTTTATGTCTGAGAGGAGAGTAGTCATCAGAACC-TGTACTGTTTC  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGGGTTTATGTCTGAGAGGAGAGTAGTCATCAGAACCTTGTACTGTTTC  850

seq1  AGAGGCCCATAA-TTTTAGTCAGTGCTTCACAGTAGTAGTCTTGAGCCTT  898
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCCATAATTTTTAGTCAGTGCTTCACAGTAGTAGTCTTGAGCCTT  900

seq1  CCTGTGAGTACGCCTGG--AAATAATTGGT-GGCA-TACTGCGCATGCCC  944
      |||||||||||||||||  ||||||||||| |||| ||||||||||||||
seq2  CCTGTGAGTACGCCTGGGAAAATAATTGGTGGGCATTACTGCGCATGCCC  950

seq1  AGTGAACTTAGATGTCATCTTCACAAAAGTTGTATGCT-CTCAGTCACAG  993
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  AGTGAACTTAGATGTCATCTTCACAAAAGTTGTATGCTCCTCAGTTACAG  1000

seq1  AGAACA-AAT-CCACAA-CTCCACCCTTCCATTTAATAGATTGTAATCTC  1040
      |||||| ||| |||||| ||||||||||||| ||||||||||| | ||||
seq2  AGAACATAATCCCACAACCTCCACCCTTCCA-TTAATAGATTGAATTCTC  1049

seq1  T--CTGCAAAA-CAAACTATCTGT-CCACACC-ATCCCACC  1076
      |   ||||||| |||||||||||| ||||||| ||||||||
seq2  TTCTTGCAAAACCAAACTATCTGTCCCACACCGATCCCACC  1090


seq1: chr7_78424956_78425526
seq2: B6Ng01-173I16.g_69_639 (reverse)

seq1  TGTGTTGTGTATTGTCATCTGTATACCTTTGCAAGAGACAAGTGCATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGTGTATTGTCATCTGTATACCTTTGCAAGAGACAAGTGCATTTA  50

seq1  GGTGTATTGGTCAATTTAAAAATATGGATATTTTCTTTTGTTTCAATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATTGGTCAATTTAAAAATATGGATATTTTCTTTTGTTTCAATGTT  100

seq1  TTGCTATTGAATTTCTGGAATTTCAGTTTTAAATAAGTGTTTTTCCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTGAATTTCTGGAATTTCAGTTTTAAATAAGTGTTTTTCCTTTT  150

seq1  CTGCTTTTTAGGTTTTGGGATTTCTCATGATTTGGATATTAAACCCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTTAGGTTTTGGGATTTCTCATGATTTGGATATTAAACCCTTGT  200

seq1  CAGAGTCATGGTCTCAGGTCTTCTCTTCATTATCTGGGGTGATTCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCATGGTCTCAGGTCTTCTCTTCATTATCTGGGGTGATTCTTCTT  250

seq1  TCCCATGATTGTTTCTCTTGTGGTACAGCAGCTTTTTATCTTGATAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGATTGTTTCTCTTGTGGTACAGCAGCTTTTTATCTTGATAAAAT  300

seq1  CTCATTTGTTTATTTTTGGTGTTCATTTACTATGCTTTGAGGATCCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGTTTATTTTTGGTGTTCATTTACTATGCTTTGAGGATCCTCTC  350

seq1  AAAAAATTGGGAAGCTGTACAGACTGCTGAGCAGTTAAGAGTGTCATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTGGGAAGCTGTACAGACTGCTGAGCAGTTAAGAGTGTCATTAC  400

seq1  TCTTTAAGGGGACCAGAGTTTAATTCCTAGGACCCATACATGCTGAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGGGGACCAGAGTTTAATTCCTAGGACCCATACATGCTGAGCAA  450

seq1  CTCTCTGTAACTCTAGCTCTTCTGGCCTCTGTGGACATTGCACTCACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTAACTCTAGCTCTTCTGGCCTCTGTGGACATTGCACTCACATG  500

seq1  CTATCTCTACCTCTGTCACACACACATGAGTGTCATTTTTAAAAAGGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTACCTCTGTCACACACACATGAGTGTCATTTTTAAAAAGGTGC  550

seq1  ACTCCATCATCCCAAGAATTC  571
      |||||||||||||||||||||
seq2  ACTCCATCATCCCAAGAATTC  571


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