BAC Information

Click to search

BAC

Clone NameB6Ng01-175L10
Chromosome7 (Build37)
Map Location 125,335,146 - 125,493,851
singlet/doubletdoublet
Overlap gene2610207I05Rik, LOC100043339
Upstream geneXylt1, LOC669758, Rps15a, Arl6ip1
Downstream geneSyt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175L10.bB6Ng01-175L10.g
ACCGA003445GA003446
length453969
definitionB6Ng01-175L10.b B6Ng01-175L10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,335,146 - 125,335,604)(125,492,915 - 125,493,851)
sequence
ctcaaaaataaaacagagatgtataagaaaggacgtttccaacagctatc
aaaggtgaggtgaaagagcagggaggaaggagcatctatggacagtgcag
gcactctgagcacacaggctggagaaagcaggcacaagcatcaagttttc
ttccttctcacaaaactatcatttaacacagaacattgctctctactaaa
attgttttcacctctgtatggtccaatagaaggaagaaatatataaacta
ggtgcagtaatcctaaaatcaaaatcagacagcataattccaatacttgg
gaagcaaaggaaaaggtgggcagatctctttttttcaccagtcagagcta
tagagctaattcaaataaaaagaaatatcaaaaatgatgccacatcaaat
ttcttgtatccttttgtgtgtgtgtgtgtgtgtgtgtgtgtaatgatggg
att
gaattcaggttgtcatgcttataaggcaagaactttgccaactaagccat
ctccctgatcctggtatcatgtctttgagaagtacaaataggaaaggaga
taaattcagggtcaaagagagctgatgccttcttcctttaaagtggaagg
cactggagtgccagaacatttcaaagtgtccttcagatttctttgtcgac
agatggggctcaagggtgtcactgttctctctggacctttctggatgttt
ctctataaacctggtagcatgtaggaccagcaacaagtatgatacagaac
cacaggatgaagtaagctatagattcccgtagcctctttggggttgtttg
aatccttagtttgaatccacagaaagctggatgcaatggaactcactgct
aatcccagatcccagatcccagctaccagctaccagagatggtagacgga
gacaagagaattagccagaggcttgcaggctagctatcctggagcatgct
ggttggcagaaacaagagaccctgccttaacaggatggaaagagagaaca
gactcctgaaagttgtctttctgaccttcacatgtacacacacacacaca
cacacacacacacacacacactgacatcataagtagaatggtactcgtca
ccagggaagggcttcagcatggggtacactaaagaaagatgagaggtaaa
aaggaccaaaattcactatctacacatataaatgggccaaatcattttta
aaatggtgactaaaatactaaattttatttatgtattcagaacaatattt
tattttcaattctataataattttttaattttttttaaaaatgtacttat
ttggcaagcttttaatgtgctaatgatggcaggtgtcaaaggtcatgtga
atcagaacctcttttttcttcatggaaggttctgggggatcgaatttcaa
ggtcaatcaagcttgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_125335146_125335604
seq2: B6Ng01-175L10.b_43_501

seq1  GAATTCCTCAAAAATAAAACAGAGATGTATAAGAAAGGACGTTTCCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAAAAATAAAACAGAGATGTATAAGAAAGGACGTTTCCAACA  50

seq1  GCTATCAAAGGTGAGGTGAAAGAGCAGGGAGGAAGGAGCATCTATGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAAAGGTGAGGTGAAAGAGCAGGGAGGAAGGAGCATCTATGGACA  100

seq1  GTGCAGGCACTCTGAGCACACAGGCTGGAGAAAGCAGGCACAAGCATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGCACTCTGAGCACACAGGCTGGAGAAAGCAGGCACAAGCATCAA  150

seq1  GTTTTCTTCCTTCTCACAAAACTATCATTTAACACAGAACATTGCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTCCTTCTCACAAAACTATCATTTAACACAGAACATTGCTCTCT  200

seq1  ACTAAAATTGTTTTCACCTCTGTATGGTCCAATAGAAGGAAGAAATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATTGTTTTCACCTCTGTATGGTCCAATAGAAGGAAGAAATATAT  250

seq1  AAACTAGGTGCAGTAATCCTAAAATCAAAATCAGACAGCATAATTCCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGGTGCAGTAATCCTAAAATCAAAATCAGACAGCATAATTCCAAT  300

seq1  ACTTGGGAAGCAAAGGAAAAGGTGGGCAGATCTCTTTTTTTCACCAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAAGCAAAGGAAAAGGTGGGCAGATCTCTTTTTTTCACCAGTCA  350

seq1  GAGCTATAGAGCTAATTCAAATAAAAAGAAATATCAAAAATGATGCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATAGAGCTAATTCAAATAAAAAGAAATATCAAAAATGATGCCACA  400

seq1  TCAAATTTCTTGTATCCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTCTTGTATCCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTAAT  450

seq1  GATGGGATT  459
      |||||||||
seq2  GATGGGATT  459

seq1: chr7_125492915_125493851
seq2: B6Ng01-175L10.g_70_1024 (reverse)

seq1  TGACCT--GAATTCGAT-CCCCAGAACCTT-CATGGAG-AAAAAGAGG-T  44
      ||||||   |||||||| |||||||||||| |||| || ||||||||| |
seq2  TGACCTTGAAATTCGATCCCCCAGAACCTTCCATGAAGAAAAAAGAGGTT  50

seq1  CTGA-TCACATGACCTTTGACACCTGCC-TCA-TGGCACAT--AAAGC-T  88
      |||| ||||||||||||||||||||||| ||| | ||||||  ||||| |
seq2  CTGATTCACATGACCTTTGACACCTGCCATCATTAGCACATTAAAAGCTT  100

seq1  GCCAAATAAGTACATTTTTAAAAAAA--TTAAAAATTATTATAGAATTGA  136
      ||||||||||||||||||||||||||  | ||||||||||||||||||||
seq2  GCCAAATAAGTACATTTTTAAAAAAAATTAAAAAATTATTATAGAATTGA  150

seq1  AAATAAAAATATGTTCTGAATACATAAATAAAATTTAGTATTTTAGTCAC  186
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATATTGTTCTGAATACATAAATAAAATTTAGTATTTTAGTCAC  200

seq1  CATTTTAAAAATGATTTGG-CCATTTATATGTGTAGATAGTGAATTTTGG  235
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATTTTAAAAATGATTTGGCCCATTTATATGTGTAGATAGTGAATTTTGG  250

seq1  TCCTTTTTACCTCTCATC-TTCTTTAGTGTACCCCATGCTGAAGCCCTT-  283
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  TCCTTTTTACCTCTCATCTTTCTTTAGTGTACCCCATGCTGAAGCCCTTC  300

seq1  CCTGGTGACGAGTACCATTCTACTTATGATGTCAGTGTGTGTGTGTGTGT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGACGAGTACCATTCTACTTATGATGTCAGTGTGTGTGTGTGTGT  350

seq1  GTGTGTGTGTGTGTGTGTGTACATGTGAAGGTCAG-AAGACAACTTTCAG  382
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTACATGTGAAGGTCAGAAAGACAACTTTCAG  400

seq1  GAGTCTGTTCTCTCTTTCCATCCTGTTAAGGCAGGGTCTCTTGTTTCTGC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGTTCTCTCTTTCCATCCTGTTAAGGCAGGGTCTCTTGTTTCTGC  450

seq1  CAACCAGCATGCTCCAGGATAGCTAGCCTGCAAGCCTCTGGCTAATTCTC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGCATGCTCCAGGATAGCTAGCCTGCAAGCCTCTGGCTAATTCTC  500

seq1  TTGTCTCCGTCTACCATCTCTGGTAGCTGGTAGCTGGGATCTGGGATCTG  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCGTCTACCATCTCTGGTAGCTGGTAGCTGGGATCTGGGATCTG  550

seq1  GGATTAGCAGTGAGTTCCATTGCATCCAGCTTTCTGTGGATTCAAACTAA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGCAGTGAGTTCCATTGCATCCAGCTTTCTGTGGATTCAAACTAA  600

seq1  GGATTCAAACAACCCCAAAGAGGCTACGGGAATCTATAGCTTACTTCATC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAAACAACCCCAAAGAGGCTACGGGAATCTATAGCTTACTTCATC  650

seq1  CTGTGGTTCTGTATCATACTTGTTGCTGGTCCTACATGCTACCAGGTTTA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTTCTGTATCATACTTGTTGCTGGTCCTACATGCTACCAGGTTTA  700

seq1  TAGAGAAACATCCAGAAAGGTCCAGAGAGAACAGTGACACCCTTGAGCCC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAACATCCAGAAAGGTCCAGAGAGAACAGTGACACCCTTGAGCCC  750

seq1  CATCTGTCGACAAAGAAATCTGAAGGACACTTTGAAATGTTCTGGCACTC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTCGACAAAGAAATCTGAAGGACACTTTGAAATGTTCTGGCACTC  800

seq1  CAGTGCCTTCCACTTTAAAGGAAGAAGGCATCAGCTCTCTTTGACCCTGA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTTCCACTTTAAAGGAAGAAGGCATCAGCTCTCTTTGACCCTGA  850

seq1  ATTTATCTCCTTTCCTATTTGTACTTCTCAAAGACATGATACCAGGATCA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTCCTTTCCTATTTGTACTTCTCAAAGACATGATACCAGGATCA  900

seq1  GGGAGATGGCTTAGTTGGCAAAGTTCTTGCCTTATAAGCATGACAACCTG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGGCTTAGTTGGCAAAGTTCTTGCCTTATAAGCATGACAACCTG  950

seq1  AATTC  937
      |||||
seq2  AATTC  955