BAC Information

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BAC

Clone NameB6Ng01-176P01
Chromosome7 (Build37)
Map Location 53,392,807 - 53,497,437
singlet/doubletdoublet
Overlap geneAbcc8, Ush1c, Otog
Upstream geneAldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11
Downstream geneMyod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176P01.bB6Ng01-176P01.g
ACCGA004343GA004344
length713992
definitionB6Ng01-176P01.b B6Ng01-176P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,392,807 - 53,393,519)(53,496,455 - 53,497,437)
sequence
gaattccttaccctcctgcttctacttcccaggttttggagttactggtg
agcattccacaccaaagcttatatatacacatatttattttacagtgata
ggaactgacccaggccttgcctttactaggcaagcgtactatcttgagtc
aacactctacagtccccaggacagttttctaaaaaaaagtttgacctgtc
atttggagtagtctggatcgcaggtaactttgtttggtttggattggttt
actgttaaagttggtttcttgtatgataagggtagctgatgctgagtttt
actagttaaactagtcaaggttggctgtgttaagatcacttaggttaaga
ctagttattcacaatggctactgcccggggaagccagacattgtgctaat
tgctgtctaagcatcatagagccttttcccataacagctgctcaaaagag
gcccagagcacagggaggtgtgtcctgtgatggacagcccttggaatgtc
cttactagggtctttctctcacctcactagggccttgacggtggaccgaa
ccacactagacagcaggaacagcggtgtgaccaggatgtggaagagagag
agagaggcaaaggccaccgagggtgagaagtctgactctttgaagaagct
gacgtggcccacaaaggtctgtggataaagcacagggggcacagggtgac
tcagggtgtgggt
gaattccactctcctaagccctcacctgcctgctctcctctgggctgggg
aggactcagctttctcctgaaaggggagatgcctgcctctcctaaaaaga
aatactagggacccaagagactagaaaaatggggacagagggatgtcatg
aatttacacactcagacacgcaccagagtgttcgctcctctccacatgac
ccctgagaaaatcttctattatctcaggcccagaggaagtcccttgcctg
gggacatgcccttctgccccacccccacccccgggcatctcttacctggc
cttccataactgttgtgacatcctccactgcaagggacatctcctggtat
gtgtggctagatgagaaatgagcttggcatatgtaaggagttaggagcgg
ccttgcttccactcaccccaaagcccagccctcccgatacactaagctcc
tgggttcttgtgtgcatgaagggaccatgggtgaggcagtgacttacctg
ggctcaggagcaggctcctgttgcagctctgcactgattttccatgtgag
tgctgaggctagggagggaccatattctccacaccaggtaagaccccctt
tgctgggggctcccactgtattctcccactgggcacccaccccaccctca
ccccaacccacccccattttctgaagccctttctttctccagctctcggg
acccttccagagaaggtttccttccttccaccccttggacctttggacct
cagttgtctctagttctccatctcttctcaactacctttatcttgggtcc
caggcctggctgtctagatgtcttcctcccctctcacaggtctctgccct
ttctcacacacctttctttctcttctctaccacccggcccagacttgttc
gcttaacattttcccagcccccagaattcccccgggttcaatacccggct
cacccctggtgctgcaccttctgcagtggacctcaactccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_53392807_53393519
seq2: B6Ng01-176P01.b_38_750

seq1  GAATTCCTTACCCTCCTGCTTCTACTTCCCAGGTTTTGGAGTTACTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACCCTCCTGCTTCTACTTCCCAGGTTTTGGAGTTACTGGTG  50

seq1  AGCATTCCACACCAAAGCTTATATATACACATATTTATTTTACAGTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCCACACCAAAGCTTATATATACACATATTTATTTTACAGTGATA  100

seq1  GGAACTGACCCAGGCCTTGCCTTTACTAGGCAAGCGTACTATCTTGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGACCCAGGCCTTGCCTTTACTAGGCAAGCGTACTATCTTGAGTC  150

seq1  AACACTCTACAGTCCCCAGGACAGTTTTCTAAAAAAAAGTTTGACCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCTACAGTCCCCAGGACAGTTTTCTAAAAAAAAGTTTGACCTGTC  200

seq1  ATTTGGAGTAGTCTGGATCGCAGGTAACTTTGTTTGGTTTGGATTGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGTAGTCTGGATCGCAGGTAACTTTGTTTGGTTTGGATTGGTTT  250

seq1  ACTGTTAAAGTTGGTTTCTTGTATGATAAGGGTAGCTGATGCTGAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAAAGTTGGTTTCTTGTATGATAAGGGTAGCTGATGCTGAGTTTT  300

seq1  ACTAGTTAAACTAGTCAAGGTTGGCTGTGTTAAGATCACTTAGGTTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTAAACTAGTCAAGGTTGGCTGTGTTAAGATCACTTAGGTTAAGA  350

seq1  CTAGTTATTCACAATGGCTACTGCCCGGGGAAGCCAGACATTGTGCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTATTCACAATGGCTACTGCCCGGGGAAGCCAGACATTGTGCTAAT  400

seq1  TGCTGTCTAAGCATCATAGAGCCTTTTCCCATAACAGCTGCTCAAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTAAGCATCATAGAGCCTTTTCCCATAACAGCTGCTCAAAAGAG  450

seq1  GCCCAGAGCACAGGGAGGTGTGTCCTGTGATGGACAGCCCTTGGAATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGCACAGGGAGGTGTGTCCTGTGATGGACAGCCCTTGGAATGTC  500

seq1  CTTACTAGGGTCTTTCTCTCACCTCACTAGGGCCTTGACGGTGGACCGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAGGGTCTTTCTCTCACCTCACTAGGGCCTTGACGGTGGACCGAA  550

seq1  CCACACTAGACAGCAGGAACAGCGGTGTGACCAGGATGTGGAAGAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTAGACAGCAGGAACAGCGGTGTGACCAGGATGTGGAAGAGAGAG  600

seq1  AGAGAGGCAAAGGCCACCGAGGGTGAGAAGTCTGACTCTTTGAAGAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCAAAGGCCACCGAGGGTGAGAAGTCTGACTCTTTGAAGAAGCT  650

seq1  GACGTGGCCCACAAAGGTCTGTGGATAAAGCACAGGGGGCACAGGGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGGCCCACAAAGGTCTGTGGATAAAGCACAGGGGGCACAGGGTGAC  700

seq1  TCAGGGTGTGGGT  713
      |||||||||||||
seq2  TCAGGGTGTGGGT  713

seq1: chr7_53496455_53497437
seq2: B6Ng01-176P01.g_69_1060 (reverse)

seq1  TAGG-GTTGA-GTCCACTGCAG-AGGTGCAGCACCA-GGGTGAGACGGGT  46
      |||| ||||| ||||||||||| ||||||||||||| ||||||| |||||
seq2  TAGGAGTTGAGGTCCACTGCAGAAGGTGCAGCACCAGGGGTGAGCCGGGT  50

seq1  TATGAA-CCGGGGGAA-TCT-GGGGCTGGGAAAATGTTTAAGCGAACAGG  93
        |||| ||||||||| ||| ||||||||||||||| ||||||||||| |
seq2  ATTGAACCCGGGGGAATTCTGGGGGCTGGGAAAATG-TTAAGCGAACAAG  99

seq1  TCTGGGCCGGGTTGTAGAGAAGAGAAAG-AAGGTGTGTGAGAAAGGGCAG  142
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  TCTGGGCCGGGTGGTAGAGAAGAGAAAGAAAGGTGTGTGAGAAAGGGCAG  149

seq1  AGACCTGTGAGAGGGGAGGAAGACATCTAGACAGCCAGGCCTGGGACCC-  191
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGACCTGTGAGAGGGGAGGAAGACATCTAGACAGCCAGGCCTGGGACCCA  199

seq1  AGAT-AAGGTAGTTGAGAAGAGATGGAGAACTAGAGACAACTGAGGTCCA  240
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGGTAGTTGAGAAGAGATGGAGAACTAGAGACAACTGAGGTCCA  249

seq1  AAGGTCCAAGGGGTGGAAGGAAGGAAACCTTCTCTGGAAGGGTCCCGAGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCAAGGGGTGGAAGGAAGGAAACCTTCTCTGGAAGGGTCCCGAGA  299

seq1  GCTGGAGAAAGAAAGGGCTTCAGAAAATGGGGGTGGGTTGGGGTGAGGGT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAAAGAAAGGGCTTCAGAAAATGGGGGTGGGTTGGGGTGAGGGT  349

seq1  GGGGTGGGTGCCCAGTGGGAGAATACAGTGGGAGCCCCCAGCAAAGGGGG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGTGCCCAGTGGGAGAATACAGTGGGAGCCCCCAGCAAAGGGGG  399

seq1  TCTTACCTGGTGTGGAGAATATGGTCCCTCCCTAGCCTCAGCACTCACAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTGGTGTGGAGAATATGGTCCCTCCCTAGCCTCAGCACTCACAT  449

seq1  GGAAAATCAGTGCAGAGCTGCAACAGGAGCCTGCTCCTGAGCCCAGGTAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATCAGTGCAGAGCTGCAACAGGAGCCTGCTCCTGAGCCCAGGTAA  499

seq1  GTCACTGCCTCACCCATGGTCCCTTCATGCACACAAGAACCCAGGAGCTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGCCTCACCCATGGTCCCTTCATGCACACAAGAACCCAGGAGCTT  549

seq1  AGTGTATCGGGAGGGCTGGGCTTTGGGGTGAGTGGAAGCAAGGCCGCTCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATCGGGAGGGCTGGGCTTTGGGGTGAGTGGAAGCAAGGCCGCTCC  599

seq1  TAACTCCTTACATATGCCAAGCTCATTTCTCATCTAGCCACACATACCAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCTTACATATGCCAAGCTCATTTCTCATCTAGCCACACATACCAG  649

seq1  GAGATGTCCCTTGCAGTGGAGGATGTCACAACAGTTATGGAAGGCCAGGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTCCCTTGCAGTGGAGGATGTCACAACAGTTATGGAAGGCCAGGT  699

seq1  AAGAGATGCCCGGGGGTGGGGGTGGGGCAGAAGGGCATGTCCCCAGGCAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGCCCGGGGGTGGGGGTGGGGCAGAAGGGCATGTCCCCAGGCAA  749

seq1  GGGACTTCCTCTGGGCCTGAGATAATAGAAGATTTTCTCAGGGGTCATGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTCCTCTGGGCCTGAGATAATAGAAGATTTTCTCAGGGGTCATGT  799

seq1  GGAGAGGAGCGAACACTCTGGTGCGTGTCTGAGTGTGTAAATTCATGACA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGCGAACACTCTGGTGCGTGTCTGAGTGTGTAAATTCATGACA  849

seq1  TCCCTCTGTCCCCATTTTTCTAGTCTCTTGGGTCCCTAGTATTTCTTTTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGTCCCCATTTTTCTAGTCTCTTGGGTCCCTAGTATTTCTTTTT  899

seq1  AGGAGAGGCAGGCATCTCCCCTTTCAGGAGAAAGCTGAGTCCTCCCCAGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGCAGGCATCTCCCCTTTCAGGAGAAAGCTGAGTCCTCCCCAGC  949

seq1  CCAGAGGAGAGCAGGCAGGTGAGGGCTTAGGAGAGTGGAATTC  983
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAGAGCAGGCAGGTGAGGGCTTAGGAGAGTGGAATTC  992