BAC Information

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BAC

Clone NameB6Ng01-179D11
Chromosome7 (Build37)
Map Location 31,252,789 - 31,429,924
singlet/doubletdoublet
Overlap geneNphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik
Upstream geneSipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2
Downstream gene2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179D11.bB6Ng01-179D11.g
ACCGA006000GA006001
length1,023434
definitionB6Ng01-179D11.b B6Ng01-179D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,428,910 - 31,429,924)(31,252,789 - 31,253,228)
sequence
gaattcctgagctcttgtctctccgtccacgacccccgccccctcggcct
gagcctcctcctggcctcatggccctagaggtaagcagggaattgcggag
aggggacagaaagggccaggagagaccagaagcctatgagttccacacac
agagggtgccgggtgaggggaggcaacccctcatactccacgtctggaag
cagatctagtgcttgaatggaaggtgccatggctggagacgttgcagagc
atgagacttccaacacccttcccttccttccccctataggtgccagagcc
actgggtgaagacaagaagaaaggcaagccagagaaactgaaacgctgca
ttcgcacagcagcggggagcagctgggaggaccccagcctgctggagtgg
gatgccggtgagtggccagagcaagaggctggatattacccatccaagaa
caggctgcactcagttttcagggccaccaacatggaaaaggaagcagggg
gactccgcagtgctggagggcaggactctcctcaccacgttgggaagtgg
tgggcataattgatctttagggctttggtgatgcctctctgtatcccagg
ctggccttaactttcaatccttttggcttagccttgtgagggatggaatt
acaggtgtgagccgccatggccgattgttatcgagggctttcagaccctt
acttgtggggaaccaggcctgctgaagggcaaaaggattttgtttcaact
ttatatgaaaacttgaaagcgcacagtgcacagtgaatgacctagattct
gcagttaacatttgtgatgtatttgtttttattcctgtgtgtttaggttt
cccgtatcccccaacccgtacacgcacatgcgcacacaactcgagcacac
acacgtacacatgttacattgtgcacgataggcatccatagaatcctgcc
ttcacaaagtcatccctgtgtttgaaatgagaaattgaaaattattttgg
ttgtttgagaaggtgggcgtctc

tcttccataaagggcaagctgtacccacctccatactattctggacacct
gaaagacactcctcctccctgagatctgtcccccctcacccgctaagttt
cttcatcaagcacctatctcccaatagatgctcccaccatccgtgccctg
aaggaccctactgaggtgaatgttgggggttctgtggatatagtctgcac
cgtcgatgccaatcccatcctcccagagatgttcagctgggagagactgg
taagcacctagcctttggtggacggaggttgagctaggaagatgcagtct
ccgggttgctagcgccttggaagtggatgttgcactgtgtgaagccatgt
gtgactgtacaggtcagggtatcttctgggaactgattttgttgaatggc
aggtgaatgtgtgaatgagtgaatagtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_31428910_31429924
seq2: B6Ng01-179D11.b_41_1063 (reverse)

seq1  GAGAC-CCCACCTCACAAAACAACAAAAATAA-TTTCAA-TTCTCATTTC  47
      ||||| |||||||    ||||||| ||||||| |||||| ||||||||||
seq2  GAGACGCCCACCTTCTCAAACAACCAAAATAATTTTCAATTTCTCATTTC  50

seq1  AAACACAGGGATGACTTTGTGAAGGCAGGATTCTATGGATGCCTATCGTG  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGGGATGACTTTGTGAAGGCAGGATTCTATGGATGCCTATCGTG  100

seq1  CAC-ATGT-ACATGTGTACGTGTGTGTGCTCGAG-TGTGTGCGCATGTGC  144
      ||| |||| ||||||||||||||||||||||||| |||||||||||||||
seq2  CACAATGTAACATGTGTACGTGTGTGTGCTCGAGTTGTGTGCGCATGTGC  150

seq1  GTGTACGGGTTGGGGGATACGGGAAACCTAAACACACAGGAAT-AAAACA  193
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGTACGGGTTGGGGGATACGGGAAACCTAAACACACAGGAATAAAAACA  200

seq1  AATACATCAC-AATGTTAACTGCAGAATCTAGGTCATTCACTGTGCACTG  242
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATACATCACAAATGTTAACTGCAGAATCTAGGTCATTCACTGTGCACTG  250

seq1  TGCGCTTTCAAGTTTTCATATAAAGTTGAAACAAAATCCTTTTGCCCTTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTTTCAAGTTTTCATATAAAGTTGAAACAAAATCCTTTTGCCCTTC  300

seq1  AGCAGGCCTGGTTCCCCACAAGTAAGGGTCTGAAAGCCCTCGATAACAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCCTGGTTCCCCACAAGTAAGGGTCTGAAAGCCCTCGATAACAAT  350

seq1  CGGCCATGGCGGCTCACACCTGTAATTCCATCCCTCACAAGGCTAAGCCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCATGGCGGCTCACACCTGTAATTCCATCCCTCACAAGGCTAAGCCA  400

seq1  AAAGGATTGAAAGTTAAGGCCAGCCTGGGATACAGAGAGGCATCACCAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTGAAAGTTAAGGCCAGCCTGGGATACAGAGAGGCATCACCAAA  450

seq1  GCCCTAAAGATCAATTATGCCCACCACTTCCCAACGTGGTGAGGAGAGTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAAAGATCAATTATGCCCACCACTTCCCAACGTGGTGAGGAGAGTC  500

seq1  CTGCCCTCCAGCACTGCGGAGTCCCCCTGCTTCCTTTTCCATGTTGGTGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCCAGCACTGCGGAGTCCCCCTGCTTCCTTTTCCATGTTGGTGG  550

seq1  CCCTGAAAACTGAGTGCAGCCTGTTCTTGGATGGGTAATATCCAGCCTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAAACTGAGTGCAGCCTGTTCTTGGATGGGTAATATCCAGCCTCT  600

seq1  TGCTCTGGCCACTCACCGGCATCCCACTCCAGCAGGCTGGGGTCCTCCCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGCCACTCACCGGCATCCCACTCCAGCAGGCTGGGGTCCTCCCA  650

seq1  GCTGCTCCCCGCTGCTGTGCGAATGCAGCGTTTCAGTTTCTCTGGCTTGC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCCCCGCTGCTGTGCGAATGCAGCGTTTCAGTTTCTCTGGCTTGC  700

seq1  CTTTCTTCTTGTCTTCACCCAGTGGCTCTGGCACCTATAGGGGGAAGGAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTGTCTTCACCCAGTGGCTCTGGCACCTATAGGGGGAAGGAA  750

seq1  GGGAAGGGTGTTGGAAGTCTCATGCTCTGCAACGTCTCCAGCCATGGCAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGTGTTGGAAGTCTCATGCTCTGCAACGTCTCCAGCCATGGCAC  800

seq1  CTTCCATTCAAGCACTAGATCTGCTTCCAGACGTGGAGTATGAGGGGTTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTCAAGCACTAGATCTGCTTCCAGACGTGGAGTATGAGGGGTTG  850

seq1  CCTCCCCTCACCCGGCACCCTCTGTGTGTGGAACTCATAGGCTTCTGGTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCACCCGGCACCCTCTGTGTGTGGAACTCATAGGCTTCTGGTC  900

seq1  TCTCCTGGCCCTTTCTGTCCCCTCTCCGCAATTCCCTGCTTACCTCTAGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGCCCTTTCTGTCCCCTCTCCGCAATTCCCTGCTTACCTCTAGG  950

seq1  GCCATGAGGCCAGGAGGAGGCTCAGGCCGAGGGGGCCGAGGTCGTGGACG  992
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  GCCATGAGGCCAGGAGGAGGCTCAGGCCGAGGGGGCGGGGGTCGTGGACG  1000

seq1  GAGAGACAAGAGCTCAGGAATTC  1015
      |||||||||||||||||||||||
seq2  GAGAGACAAGAGCTCAGGAATTC  1023


seq1: chr7_31252789_31253228
seq2: B6Ng01-179D11.g_62_501

seq1  GAATTCTCTTCCATAAAGGGCAAGCTGTACCCACCTCCATACTATTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCATAAAGGGCAAGCTGTACCCACCTCCATACTATTCTGG  50

seq1  ACACCTGAAAGACACTCCTCCTCCCTGAGATCTGTCCCCCCTCACCCGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGAAAGACACTCCTCCTCCCTGAGATCTGTCCCCCCTCACCCGCT  100

seq1  AAGTTTCTTCATCAAGCACCTATCTCCCAATAGATGCTCCCACCATCCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTTCATCAAGCACCTATCTCCCAATAGATGCTCCCACCATCCGT  150

seq1  GCCCTGAAGGACCCTACTGAGGTGAATGTTGGGGGTTCTGTGGATATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAAGGACCCTACTGAGGTGAATGTTGGGGGTTCTGTGGATATAGT  200

seq1  CTGCACCGTCGATGCCAATCCCATCCTCCCAGAGATGTTCAGCTGGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCGTCGATGCCAATCCCATCCTCCCAGAGATGTTCAGCTGGGAGA  250

seq1  GACTGGTAAGCACCTAGCCTTTGGTGGACGGAGGTTGAGCTAGGAAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTAAGCACCTAGCCTTTGGTGGACGGAGGTTGAGCTAGGAAGATG  300

seq1  CAGTCTCCGGGTTGCTAGCGCCTTGGAAGTGGATGTTGCACTGTGTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCCGGGTTGCTAGCGCCTTGGAAGTGGATGTTGCACTGTGTGAAG  350

seq1  CCATGTGTGACTGTACAGGTCAGGGTATCTTCTGGGAACTGATTTTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTGACTGTACAGGTCAGGGTATCTTCTGGGAACTGATTTTGTTG  400

seq1  AATGGCAGGTGAATGTGTGAATGAGTGAATAGTGTGTGTG  440
      ||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGGTGAATGTGTGAATGAGTGAATAGTGTGTGTG  440


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