BAC Information

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BAC

Clone NameB6Ng01-180K17
Chromosome7 (Build37)
Map Location 25,278,748 - 25,453,540
singlet/doubletdoublet
Overlap geneCadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101
Upstream geneEG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur
Downstream geneGm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180K17.bB6Ng01-180K17.g
ACCGA007038GA007039
length5571,098
definitionB6Ng01-180K17.b B6Ng01-180K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,452,979 - 25,453,540)(25,278,748 - 25,279,833)
sequence
tctggaggtaaagatccctcaggtttctggtgctcggggctctagaggtg
agggaagacggggctccccgttccctaagccccccctgttgccccatctt
ttctggctcctaggaggcatggacgccaccgtgcaagttaaaggctgcac
cactacgatcggctgcagactgatggccatgatagactcagtgggaccca
tgacagtgaaggagacctgtagttaccagtcattccttcagccccggaag
gcagaaatcggggcctctcagatgcccacttcactgtgggtgctggagct
actgtttccgttactgctgctccccctcacccacttcccttgaagaggac
actgggggtcaggggaggccttggtcctagacactggactttgcctagga
gggagccttctgcctgctgatactggaagaagtgggggtggggtgtgaag
agcagagaaagaggatgcatgtgtatttgacacaataaaattagtgattt
gctattaaatgtgtgcgcgtgcatgcatgctttttggggggcaggggaag
ggtggaa
gaattccacgcatcccatcctgcatcctgcatgagggtgtccctgtagga
aaaaaaatgtctatttttttattaggaacaaccccatatatgactatatg
atatttctacctaggtccaattagaatagacaccatcatatagttttacc
tagctgcaagggagtcagacagggggacagcgtaaagaacaatgaggatt
ctttaatgatgaggtaaagaagaatgttgagataggaaggtgtcagcccc
tgcatctatcctgcaggaggaatctgttctgcacttggtgactcttaaca
gagtgtgtgccacttctgatgggatattatatggattggtgcctagttcc
gtataaatggtaaaagtttttcaactgactgaatcccacctgacttatct
ctgggtaccaacctcagaaacctcccagacaactaacccacgggacagaa
tggaagagacctgaaaaacagctgaacttactttatttcatcaaggcaga
gaaaggctcttgatatgaccctggatggactggaaagcctccttcttcgg
cgtccctggtgctgggaggacaggcgtgctctgtcatgcccagccattgc
catttaaagacagctgaggtggctatggtgcctcatctctatctcccagc
attctacaggaaaaaccaaactgtgcattccaggttcagggagacaccgt
gcctcaaagagttaagatggggacataacagaggaaggtattcaatcccc
aatgtccttctctggagtctgtgcacacactcatgagtacttacacaagt
atgcatacaacacacacacacgcgcacgcgcgcgcgcgcacacacacaca
cacacacacacacacacacacagagtaagttattaatccagagactggag
gggatggcttggtggttaagagcactgactgctcttccagaggacccagg
ttttcatacccagccacccacacgggtgactcacatccactctgaaattt
cctgtttcaggatctgatgccctctttctgttctctgtacaccagaacac
cacaaaatggttgtgcaccacatacatgccaaataaaattatgcatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25452979_25453540
seq2: B6Ng01-180K17.b_50_612 (reverse)

seq1  TTCCACCCTTCCCCTGCCCCCC-AAAAGCATGCATGCACGCGCACACATT  49
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCCACCCTTCCCCTGCCCCCCAAAAAGCATGCATGCACGCGCACACATT  50

seq1  TAATAGCAAATCACTAATTTTATTGTGTCAAATACACATGCATCCTCTTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCAAATCACTAATTTTATTGTGTCAAATACACATGCATCCTCTTT  100

seq1  CTCTGCTCTTCACACCCCACCCCCACTTCTTCCAGTATCAGCAGGCAGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCTTCACACCCCACCCCCACTTCTTCCAGTATCAGCAGGCAGAA  150

seq1  GGCTCCCTCCTAGGCAAAGTCCAGTGTCTAGGACCAAGGCCTCCCCTGAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCTCCTAGGCAAAGTCCAGTGTCTAGGACCAAGGCCTCCCCTGAC  200

seq1  CCCCAGTGTCCTCTTCAAGGGAAGTGGGTGAGGGGGAGCAGCAGTAACGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGTCCTCTTCAAGGGAAGTGGGTGAGGGGGAGCAGCAGTAACGG  250

seq1  AAACAGTAGCTCCAGCACCCACAGTGAAGTGGGCATCTGAGAGGCCCCGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTAGCTCCAGCACCCACAGTGAAGTGGGCATCTGAGAGGCCCCGA  300

seq1  TTTCTGCCTTCCGGGGCTGAAGGAATGACTGGTAACTACAGGTCTCCTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCTTCCGGGGCTGAAGGAATGACTGGTAACTACAGGTCTCCTTC  350

seq1  ACTGTCATGGGTCCCACTGAGTCTATCATGGCCATCAGTCTGCAGCCGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATGGGTCCCACTGAGTCTATCATGGCCATCAGTCTGCAGCCGAT  400

seq1  CGTAGTGGTGCAGCCTTTAACTTGCACGGTGGCGTCCATGCCTCCTAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGTGGTGCAGCCTTTAACTTGCACGGTGGCGTCCATGCCTCCTAGGA  450

seq1  GCCAGAAAAGATGGGGCAACAGGGGGGGCTTAGGGAACGGGGAGCCCCGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAAAGATGGGGCAACAGGGGGGGCTTAGGGAACGGGGAGCCCCGT  500

seq1  CTTCCCTCACCTCTAGAGCCCCGAGCACCAGAAACCTGAGGGATCTTTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCACCTCTAGAGCCCCGAGCACCAGAAACCTGAGGGATCTTTAC  550

seq1  CTCCAGAGAATTC  562
      |||||||||||||
seq2  CTCCAGAGAATTC  563

seq1: chr7_25278748_25279833
seq2: B6Ng01-180K17.g_68_1165

seq1  GAATTCCACGCATCCCATCCTGCATCCTGCATGAGGGTGTCCCTGTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGCATCCCATCCTGCATCCTGCATGAGGGTGTCCCTGTAGGA  50

seq1  AAAAAAATGTCTATTTTTTTATTAGGAACAACCCCATATATGACTATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGTCTATTTTTTTATTAGGAACAACCCCATATATGACTATATG  100

seq1  ATATTTCTACCTAGGTCCAATTAGAATAGACACCATCATATAGTTTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTACCTAGGTCCAATTAGAATAGACACCATCATATAGTTTTACC  150

seq1  TAGCTGCAAGGGAGTCAGACAGGGGGACAGCGTAAAGAACAATGAGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCAAGGGAGTCAGACAGGGGGACAGCGTAAAGAACAATGAGGATT  200

seq1  CTTTAATGATGAGGTAAAGAAGAATGTTGAGATAGGAAGGTGTCAGCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATGATGAGGTAAAGAAGAATGTTGAGATAGGAAGGTGTCAGCCCC  250

seq1  TGCATCTATCCTGCAGGAGGAATCTGTTCTGCACTTGGTGACTCTTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTATCCTGCAGGAGGAATCTGTTCTGCACTTGGTGACTCTTAACA  300

seq1  GAGTGTGTGCCACTTCTGATGGGATATTATATGGATTGGTGCCTAGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTGCCACTTCTGATGGGATATTATATGGATTGGTGCCTAGTTCC  350

seq1  GTATAAATGGTAAAAGTTTTTCAACTGACTGAATCCCACCTGACTTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATGGTAAAAGTTTTTCAACTGACTGAATCCCACCTGACTTATCT  400

seq1  CTGGGTACCAACCTCAGAAACCTCCCAGACAACTAACCCACGGGACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTACCAACCTCAGAAACCTCCCAGACAACTAACCCACGGGACAGAA  450

seq1  TGGAAGAGACCTGAAAAACAGCTGAACTTACTTTATTTCATCAAGGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGACCTGAAAAACAGCTGAACTTACTTTATTTCATCAAGGCAGA  500

seq1  GAAAGGCTCTTGATATGACCCTGGATGGACTGGAAAGCCTCCTTCTTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTCTTGATATGACCCTGGATGGACTGGAAAGCCTCCTTCTTCGG  550

seq1  CGTCCCTGGTGCTGGGAGGACAGGCGTGCTCTGTCATGCCCAGCCATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCTGGTGCTGGGAGGACAGGCGTGCTCTGTCATGCCCAGCCATTGC  600

seq1  CATTTAAAGACAGCTGAGGTGGCTATGGTGCCTCATCTCTATCTCCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAGACAGCTGAGGTGGCTATGGTGCCTCATCTCTATCTCCCAGC  650

seq1  ATTCTACAGGAAAAACCAAACTGTGCATTCCAGGTTCAGGGAGACACCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACAGGAAAAACCAAACTGTGCATTCCAGGTTCAGGGAGACACCGT  700

seq1  GCCTCAAAGAGTTAAGATGGGGACATAACAGAGGAAGGTATTCAAT-CCC  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCCTCAAAGAGTTAAGATGGGGACATAACAGAGGAAGGTATTCAATCCCC  750

seq1  AATGTCCTTCTCTGGAGTCTGTGCACACACTCATGAGTACTTACACAAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTTCTCTGGAGTCTGTGCACACACTCATGAGTACTTACACAAGT  800

seq1  ATGCATACAACACACACACACGCGCACGCGCGCGCGCGCACACACACACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACAACACACACACACGCGCACGCGCGCGCGCGCACACACACACA  850

seq1  CACACACACACACACACACACAGAGTAAG-TATTAATCCAGAGACTGGA-  897
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  CACACACACACACACACACACAGAGTAAGTTATTAATCCAGAGACTGGAG  900

seq1  GGGATGGCTTGGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGACCCAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGCTTGGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGACCCAGG  950

seq1  -TTTCATACCCAG-CACCCACAC-GGTGACTCACATCCACTCTGAAA-TT  993
       |||||||||||| ||||||||| ||||||||||||||||||||||| ||
seq2  TTTTCATACCCAGCCACCCACACGGGTGACTCACATCCACTCTGAAATTT  1000

seq1  CCTGTTTCAGGGTTCTGATGCCCTC-TTCTGTTCTCTGTGGCCACCAGAC  1042
      ||||||||| || |||||||||||| |||||||||||||   ||||||| 
seq2  CCTGTTTCA-GGATCTGATGCCCTCTTTCTGTTCTCTGT--ACACCAGA-  1046

seq1  ACAC----AAATGG-TGTGCA-CACATACATG-CAGATAAAA-TATGCAT  1084
      ||||    |||||| |||||| |||||||||| || |||||| |||||||
seq2  ACACCACAAAATGGTTGTGCACCACATACATGCCAAATAAAATTATGCAT  1096

seq1  AC  1086
      ||
seq2  AC  1098