BAC Information

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BAC

Clone NameB6Ng01-184F06
Chromosome7 (Build37)
Map Location 9,747,935 - 9,936,249
singlet/doubletdoublet
Overlap geneEG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4
Upstream geneLOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582
Downstream geneLOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184F06.bB6Ng01-184F06.g
ACCGA009733GA009734
length1,1461,054
definitionB6Ng01-184F06.b B6Ng01-184F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,747,935 - 9,749,081)(9,935,213 - 9,936,249)
sequence
gaattcaggcccatagtgttatagacatattaagtccttttctttaataa
tataataattctatatctctgtgaaatttattgctatgtctcatatagtt
ttttttttatattctgttatttctatgtcataagatacaagattagaact
tcacaagtgaacttttctaagaaagaggggttatgagaatttgatacatc
attctttcatatttttctacactataatttatctatcattataagacact
ttggatgtatgagataacttcatccaatctaactttatttctgtatattt
ttatcaagaggtacaacttatagtccgatttattttgccctataattacc
tgggtatgactttttctaatctgatttgctggtaacacttttaggctgcc
aaatcttgtttaaatttttagattttattggatcttattatctgtctcat
gatgaggcacagaggcagacattgacagaatatttcagaaacttagtcta
aataggagatctctggcgtttttatgtgagtcaaaacctctagtgtacga
tattaccttcaagtagggcaatataggaatatctcttcaaaatgctaaat
cagtgttatgtacaggactctcctgctcaatcgtagaaggatttctggat
tatagcataaagaccttctttaaaaaatattaatcaaataccccaaattg
taaaagtatcaaaatcccttcaaacattggaaacatggatatcaagatta
aaactgaaagacagaaaggcagatattataacatgcaaatatattttgtt
acttcttgtcaaacagctatgcttgctgttcccattagaagtggatctgc
caggattccatgtttgcacatttgaattagagatgagagtataagtcaca
ggtaatcaacagtttgcagtaagtatgattacaagtgttttcaaggaaca
ctacacctcatgctgctctctgtgtgtagatcccttcagcttacctatgg
gcctttcagtccatcttcagtgatgatgaacaatatccctatctctatca
gatgggcccaaaggacacatctctagcattggcaatggtctccttcatac
ctttactcacctggaactggattggccttgtcatccagaatgatga
gaattcctcttgtagtttgatattaatagtttataggagcttcttcttat
gtttattcacatgcaaatgtggaatacataatctgtatcagtagttccag
atgttctgattatcgaattgacagtttgaattatattttcaaaaataaag
tattcttagtactaagctgggaacaactgtcattcaattgtctatcacta
actcatgcttaactcactactattcatttgaggtatgaagtaggatttca
tggtcttttcacctagctcattttcatatgtctatttttcataatgtgtt
atgaaaattttgttatattatgatggcttagttttgtttaatcttgtttt
attttactattctcccatagaatcctgtcattttctaatgagtgacataa
agtggatttgatgaaaaaggaagaaaatatgaatattaactatgatatat
ttgccaggagaactgacaattgttcacatcccagtagaagaactggaaac
tgtaattaggatatattatgtgagaataacaagttattttcaataaataa
aacaatcaaaattaaaaacaaattctccctgttctcagagaatgatcttt
ctgttatgtgttgtgttcttttggtaggtgtttttgtcaagaattattcc
acacatattcatcaaatgtattgttcttgaatgaccttttttccctctca
ttaaacattattctgtttttttccatttttttaataaaggaaagttctcc
ttttgtatatgaatgtgtcttcctacctctgcaggcatcttaggaatgtc
ttaaaaaataaaccagttttgttgtcgtagattttcattttagagaatgt
taacaaaaaagttcaattattcactgaaaattatatgttgcttttgtctg
gttgctggttattgctgtacttgagggtgtggtcaatagcctttattttt
tctggtggttcctattgctgttctataggttcctttgatcctctgggtca
tctaatggtaaagagtggaatgggatttctttcaaatttacttaaaaagt
catg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9747935_9749081
seq2: B6Ng01-184F06.b_45_1190

seq1  GAATTCAGGCCCATAGTGTTATAGACATATTAAGTCCTTTTCTTTAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCCCATAGTGTTATAGACATATTAAGTCCTTTTCTTTAATAA  50

seq1  TATAATAATTCTATATCTCTGTGAAATTTATTGCTATGTCTCATATAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAATTCTATATCTCTGTGAAATTTATTGCTATGTCTCATATAGTT  100

seq1  TTTTTTTTATATTCTGTTATTTCTATGTCATAAGATACAAGATTAGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTATATTCTGTTATTTCTATGTCATAAGATACAAGATTAGAACT  150

seq1  TCACAAGTGAACTTTTCTAAGAAAGAGGGGTTATGAGAATTTGATACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGTGAACTTTTCTAAGAAAGAGGGGTTATGAGAATTTGATACATC  200

seq1  ATTCTTTCATATTTTTCTACACTATAATTTATCTATCATTATAAGACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCATATTTTTCTACACTATAATTTATCTATCATTATAAGACACT  250

seq1  TTGGATGTATGAGATAACTTCATCCAATCTAACTTTATTTCTGTATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGTATGAGATAACTTCATCCAATCTAACTTTATTTCTGTATATTT  300

seq1  TTATCAAGAGGTACAACTTATAGTCCGATTTATTTTGCCCTATAATTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGAGGTACAACTTATAGTCCGATTTATTTTGCCCTATAATTACC  350

seq1  TGGGTATGACTTTTTCTAATCTGATTTGCTGGTAACACTTTTAGGCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATGACTTTTTCTAATCTGATTTGCTGGTAACACTTTTAGGCTGCC  400

seq1  AAATCTTGTTTAAATTTTTAGATTTTATTGGATCTTATTATCTGTCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGTTTAAATTTTTAGATTTTATTGGATCTTATTATCTGTCTCAT  450

seq1  GATGAGGCACAGAGGCAGACATTGACAGAATATTTCAGAAACTTAGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGCACAGAGGCAGACATTGACAGAATATTTCAGAAACTTAGTCTA  500

seq1  AATAGGAGATCTCTGGCGTTTTTATGTGAGTCAAAACCTCTAGTGTACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAGATCTCTGGCGTTTTTATGTGAGTCAAAACCTCTAGTGTACGA  550

seq1  TATTACCTTCAAGTAGGGCAATATAGGAATATCTCTTCAAAATGCTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCTTCAAGTAGGGCAATATAGGAATATCTCTTCAAAATGCTAAAT  600

seq1  CAGTGTTATGTACAGGACTCTCCTGCTCAATCGTAGAAGGATTTCTGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTATGTACAGGACTCTCCTGCTCAATCGTAGAAGGATTTCTGGAT  650

seq1  TATAGCATAAAGACCTTCTTTAAAAAATATTAATCAAATACCCCAAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATAAAGACCTTCTTTAAAAAATATTAATCAAATACCCCAAATTG  700

seq1  TAAAAGTATCAAAATCCCTTCAAACATTGGAAACATGGATATCAAGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTATCAAAATCCCTTCAAACATTGGAAACATGGATATCAAGATTA  750

seq1  AAACTGAAAGACAGAAAGGCAGATATTATAACATGCAAATATATTTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAAGACAGAAAGGCAGATATTATAACATGCAAATATATTTTGTT  800

seq1  ACTTCTTGTCAAACAGCTATGCTTGCTGTTCCCATTAGAAGTGGATCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGTCAAACAGCTATGCTTGCTGTTCCCATTAGAAGTGGATCTGC  850

seq1  CAGGATTCCATGTTTGCACATTTGAATTAGAGATGAGAGTATAAGTCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTCCATGTTTGCACATTTGAATTAGAGATGAGAGTATAAGTCACA  900

seq1  GGTAATCAACAGTTTGCAGGTAAGTATGATTACAAGTGTTTTCAAGG-AC  949
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  GGTAATCAACAGTTTGCA-GTAAGTATGATTACAAGTGTTTTCAAGGAAC  949

seq1  ACTACACCTCATGCTGCTCTCTGTGTTGTAGAT-CCTTCAGCTTACCTAT  998
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  ACTACACCTCATGCTGCTCTCTGTG-TGTAGATCCCTTCAGCTTACCTAT  998

seq1  GGGCCTTTCAGTTCCATCTTCAGTGATGATGAACAATATCCCTATCTCTA  1048
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTTCAG-TCCATCTTCAGTGATGATGAACAATATCCCTATCTCTA  1047

seq1  TCAGATGGCCCCAAAGGACACATCTCTAGCATTGGCAATGGTCTCCTTCA  1098
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGGCCCAAAGGACACATCTCTAGCATTGGCAATGGTCTCCTTCA  1097

seq1  TA-CTTTACTTCAACTGGAACTGGATTGGCCTTGTCATCCCAGATGATGA  1147
      || |||||| ||| ||||||||||||||||||||||||||   |||||||
seq2  TACCTTTAC-TCACCTGGAACTGGATTGGCCTTGTCATCCAGAATGATGA  1146

seq1: chr7_9935213_9936249
seq2: B6Ng01-184F06.g_66_1119 (reverse)

seq1  CATGACTTTTT-AGTAAATTTG-AAGAA--TCCATT-CACTCTTTTCCAT  45
      ||||||||||| |||||||||| |||||   ||||| |||||||| ||||
seq2  CATGACTTTTTAAGTAAATTTGAAAGAAATCCCATTCCACTCTTTACCAT  50

seq1  AAGATGA-CCAGAAGATCAAAGGAACCTATAG-ACAGCAATA-GAAC--A  90
       |||||| ||||| |||||||||||||||||| ||||||||| ||||   
seq2  TAGATGACCCAGAGGATCAAAGGAACCTATAGAACAGCAATAGGAACCAC  100

seq1  CAGAAAAAATAAAGGCTATTGA-CACA-CCTCAAGTACAGCAATAA-CAG  137
      |||||||||||||||||||||| |||| |||||||||||||||||| |||
seq2  CAGAAAAAATAAAGGCTATTGACCACACCCTCAAGTACAGCAATAACCAG  150

seq1  CAACCAGACAAAAGCAACATATAATTTTCAGTG-ATAATTGAACTTTTTT  186
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAACCAGACAAAAGCAACATATAATTTTCAGTGAATAATTGAACTTTTTT  200

seq1  GTTAACATTCTCT-AAATG-AAATCTACGACAACAAAACTGGTTTATTTT  234
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  GTTAACATTCTCTAAAATGAAAATCTACGACAACAAAACTGGTTTATTTT  250

seq1  TTAAGACATTCCTAAGATGCCTGCAGAGGTAGGAAGACACATTCATATAC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACATTCCTAAGATGCCTGCAGAGGTAGGAAGACACATTCATATAC  300

seq1  AAAAGGAGAACTTTCCTTTATT-AAAAAATGGAAAAAAACAGAATAATGT  333
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAAGGAGAACTTTCCTTTATTAAAAAAATGGAAAAAAACAGAATAATGT  350

seq1  TTAATGAGAGGGAAAAAAGGTCATTCAAGAACAATACATTTGATGAATAT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAGAGGGAAAAAAGGTCATTCAAGAACAATACATTTGATGAATAT  400

seq1  GTGTGGAATAATTCTTGACAAAAACACCTACCAAAAGAACACAACACATA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAATAATTCTTGACAAAAACACCTACCAAAAGAACACAACACATA  450

seq1  ACAGAAAGATCATTCTCTGAGAACAGGGAGAATTTGTTTTTAATTTTGAT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGATCATTCTCTGAGAACAGGGAGAATTTGTTTTTAATTTTGAT  500

seq1  TGTTTTATTTATTGAAAATAACTTGTTATTCTCACATAATATATCCTAAT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTTATTGAAAATAACTTGTTATTCTCACATAATATATCCTAAT  550

seq1  TACAGTTTCCAGTTCTTCTACTGGGATGTGAACAATTGTCAGTTCTCCTG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTCCAGTTCTTCTACTGGGATGTGAACAATTGTCAGTTCTCCTG  600

seq1  GCAAATATATCATAGTTAATATTCATATTTTCTTCCTTTTTCATCAAATC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATATCATAGTTAATATTCATATTTTCTTCCTTTTTCATCAAATC  650

seq1  CACTTTATGTCACTCATTAGAAAATGACAGGATTCTATGGGAGAATAGTA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATGTCACTCATTAGAAAATGACAGGATTCTATGGGAGAATAGTA  700

seq1  AAATAAAACAAGATTAAACAAAACTAAGCCATCATAATATAACAAAATTT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACAAGATTAAACAAAACTAAGCCATCATAATATAACAAAATTT  750

seq1  TCATAACACATTATGAAAAATAGACATATGAAAATGAGCTAGGTGAAAAG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACACATTATGAAAAATAGACATATGAAAATGAGCTAGGTGAAAAG  800

seq1  ACCATGAAATCCTACTTCATACCTCAAATGAATAGTAGTGAGTTAAGCAT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAAATCCTACTTCATACCTCAAATGAATAGTAGTGAGTTAAGCAT  850

seq1  GAGTTAGTGATAGACAATTGAATGACAGTTGTTCCCAGCTTAGTACTAAG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGTGATAGACAATTGAATGACAGTTGTTCCCAGCTTAGTACTAAG  900

seq1  AATACTTTATTTTTGAAAATATAATTCAAACTGTCAATTCGATAATCAGA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTATTTTTGAAAATATAATTCAAACTGTCAATTCGATAATCAGA  950

seq1  ACATCTGGAACTACTGATACAGATTATGTATTCCACATTTGCATGTGAAT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGAACTACTGATACAGATTATGTATTCCACATTTGCATGTGAAT  1000

seq1  AAACATAAGAAGAAGCTCCTATAAACTATTAATATCAAACTACAAGAGGA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAGAAGAAGCTCCTATAAACTATTAATATCAAACTACAAGAGGA  1050

seq1  ATTC  1037
      ||||
seq2  ATTC  1054