BAC Information

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BAC

Clone NameB6Ng01-188C18
Chromosome7 (Build37)
Map Location 50,051,051 - 50,052,154
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964
Downstream geneLOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188C18.bB6Ng01-188C18.g
ACCGA012548GA012549
length1,2171,095
definitionB6Ng01-188C18.b B6Ng01-188C18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactctcgcacctgcgtacaaggcgtgtttactagttaggcacag
cggaggcccccgccatcttataatggcgattcctcgcggcacacacagct
ctcctcagagattactggcggcaagcatgcgattgcttgcagcacgtact
ggctttccacataagcaacccagatgtccctcaacagagggatagataca
tagtatgtggtatatttacacaatggagtactactcagtcattaaaaaca
atgcattcatgaaatattcaggcaaatggatggaacttgagaatatcttc
ctgagtgaggtgactcagtcacaaaggcacaaacatgatatgtactcact
gataagtggatattagccaaaatgtacagaatatcaagattcaattcaca
gaccaaatgaagcctaagaagaaggaagaccaaactgtggatgcttaagt
gctttttagaagggtgaacaaaatactcacaggaggaaacatggagacga
aatgaaaagttcagctcaggaactttgggcaggtcatgaaatgcttgcct
ctctgggaaagagaggctaattagcattgttcagaccaaggtgtgggaac
ccacctgtgggtggagacacatttcacaggatggactgttgcccaccctc
agacaagggaactccttgtcatctcattccctaaagaccaatcagtttaa
agggtgcactcttctgccaatcacattgtgcctagttgttgatgctctat
tttgcccctggaaactgcatcaaaactctgaatgagtgccaggtgtcact
gcctctccttcaggtctgggactacccaagagcaatggaaaaataaattt
ctcttgctgtttgcacttgtttcactcaagggggtccccgattaggattc
ccagagtcttacaaaagtgtggagcagagaacgaaaggaaaggctcatac
agaaacttgcccccacctggggaatccattccatatacagccaccaaccc
agaatgcctattggtgatgcctgcaagtgcttgctgaatagaagcctcca
taatgattgtctcctagaaggcttcttcccgtacttcttgacaaatacag
atgaagaaagcctcctaggcatccattgaactggagctcaagggtccctt
gaatgcaggaattgcgatgtacctgacgactctgaaggggttgtccaagt
cctcccaagtggagtgc
gaattctgtgctaaaactttctagtccttcacttttttagttggagtaat
tttaatgtctgcttctaattcttaggctttataggtctatttaaattgtt
tatgtgatcttgctttaacatttgtaaacagaaattttccctattgtatg
gttttggcttctttgtcaaattcaagtgtcctcagatatgtaggtcttca
attcaattccattgatcaagatatctatttctgtaccaataccatgcagt
ttttttctttatcactgtttctctgtataacagcttgagttcagggacag
tgaatcctccaaaaggtttcttcttcttctttttttaatggtaataacat
tttattgcaaaagcagtgaatacaagattatcttgttccaccttcttcct
tgttattaattaacccattacaaatgtcataacttatactggctacattt
ttggtttccttgaggactgtcctttgggtttgtgagagggctcagaagat
aaaagtcctcgttctcaagtctgttgccttgagtttgatccctgaaactt
gcatagtaggaggatagaactgacttcctcaatgttttctttgaccttac
aggcaccatgcatgcagtagtacatgctccatgcaatgtgcacctctcca
cataaaggcctctgtcattttttataggatttcatttaatgtcattttct
atgctttggttgtgttagaatatccagggtttgctgtagtaggattgctg
tgctctgaaggtgccatattgacttctgttgactggtttttttaaatgct
gatctttatccatctggttgtccctgggtgttcctgaatgattcatgttc
tacaggtctgtatgctttgggatctgcaggtctgatgaaaggtctgttga
gaattagtcagacaatggaaggtctggttggttggacagcgcactacatt
gcagcaggactcagtgggaacagaaaagggagcaggaaaggtgtcaataa
atgttttgattaaatcatttttttacagacatcttcaatccactctagtt
tgcaccaccctcacagcttcaaccgataccttcccaccatgcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50051051_50052154
seq2: B6Ng01-188C18.g_65_1159 (reverse)

seq1  GGGGCATGGTGGGAAGGTATCGGTTGGAAAGCTGTTGAGGGTGGTGCAAA  50
      ||||||||||||||||||||||||||  |||||| |||||||||||||||
seq2  GGGGCATGGTGGGAAGGTATCGGTTG--AAGCTG-TGAGGGTGGTGCAAA  47

seq1  CTAGAAGTGGGATTGAAGATTGGTCTGTAAAAAAATGATTTAAATCAAAA  100
      |||| ||| |||||||||||  ||||||||||||||||||| |||| |||
seq2  CTAG-AGT-GGATTGAAGAT--GTCTGTAAAAAAATGATTT-AATC-AAA  91

seq1  ACATTTATTGACACCTTTCCTGCTCCCTTTTCTGTTCCCACTGAGTCCCT  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACATTTATTGACACCTTTCCTGCTCCCTTTTCTGTTCCCACTGAGT-CCT  140

seq1  GCTGCAATGTAGTGCGCTGTCCAACCAACCAGACCTTCCATTGTCTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAATGTAGTGCGCTGTCCAACCAACCAGACCTTCCATTGTCTGACT  190

seq1  AATTCTCAACAGACC-TTCATCAGACCTGCAGATCCCAAAGCATACAGAC  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATTCTCAACAGACCTTTCATCAGACCTGCAGATCCCAAAGCATACAGAC  240

seq1  CTGTAGAACCTGAATCATTCAGGAACACCCAGGGACAACCAGATGGATAA  299
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAACATGAATCATTCAGGAACACCCAGGGACAACCAGATGGATAA  290

seq1  AGATCAGCATTTAAAAAAACCAGTCAACAGAAGTCAATATGGCACCTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGCATTTAAAAAAACCAGTCAACAGAAGTCAATATGGCACCTTCA  340

seq1  GAGCACAGCAATCCTACTACAGCAAACCCTGGATATTCTAACACAACCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGCAATCCTACTACAGCAAACCCTGGATATTCTAACACAACCAA  390

seq1  AGCATAGAAAATGACATTAAATGAAATCCTATAAAAAATGACAGAGGCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGAAAATGACATTAAATGAAATCCTATAAAAAATGACAGAGGCCT  440

seq1  TTATGTGGAGAGGTGCACATTGCATGGAGCATGTACTACTGCATGCATGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGGAGAGGTGCACATTGCATGGAGCATGTACTACTGCATGCATGG  490

seq1  TGCCTGTAAGGTCAAAGAAAACATTGAGGAAGTCAGTTCTATCCTCCTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAAGGTCAAAGAAAACATTGAGGAAGTCAGTTCTATCCTCCTAC  540

seq1  TATGCAAGTTTCAGGGATCAAACTCAAGGCAACAGACTTGAGAACGAGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAGTTTCAGGGATCAAACTCAAGGCAACAGACTTGAGAACGAGGA  590

seq1  CTTTTATCTTCTGAGCCCTCTCACAAACCCAAAGGACAGTCCTCAAGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCTTCTGAGCCCTCTCACAAACCCAAAGGACAGTCCTCAAGGAA  640

seq1  ACCAAAAATGTAGCCAGTATAAGTTATGACATTTGTAATGGGTTAATTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAATGTAGCCAGTATAAGTTATGACATTTGTAATGGGTTAATTAA  690

seq1  TAACAAGGAAGAAGGTGGAACAAGATAATCTTGTATTCACTGCTTTTGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGGAAGAAGGTGGAACAAGATAATCTTGTATTCACTGCTTTTGCA  740

seq1  ATAAAATGTTATTACCATTAAAAAAAGAAGAAGAAGAAACCTTTTGGAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGTTATTACCATTAAAAAAAGAAGAAGAAGAAACCTTTTGGAGG  790

seq1  ATTCACTGTCCCTGAACTCAAGCTGTTATACAGAGAAACAGTGATAAAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGTCCCTGAACTCAAGCTGTTATACAGAGAAACAGTGATAAAGA  840

seq1  AAAAAACTGCATGGTATTGGTACAGAAATAGATATCTTGATCAATGGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTGCATGGTATTGGTACAGAAATAGATATCTTGATCAATGGAAT  890

seq1  TGAATTGAAGACCTACATATCTGAGGACACTTGAATTTGACAAAGAAGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGAAGACCTACATATCTGAGGACACTTGAATTTGACAAAGAAGCC  940

seq1  AAAACCATACAATAGGGAAAATTTCTGTTTACAAATGTTAAAGCAAGATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATACAATAGGGAAAATTTCTGTTTACAAATGTTAAAGCAAGATC  990

seq1  ACATAAACAATTTAAATAGACCTATAAAGCCTAAGAATTAGAAGCAGACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACAATTTAAATAGACCTATAAAGCCTAAGAATTAGAAGCAGACA  1040

seq1  TTAAAATTACTCCAACTAAAAAAGTGAAGGACTAGAAAGTTTTAGCACAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTACTCCAACTAAAAAAGTGAAGGACTAGAAAGTTTTAGCACAG  1090

seq1  AATTC  1104
      |||||
seq2  AATTC  1095