BAC Information

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BAC

Clone NameB6Ng01-189M02
Chromosome7 (Build37)
Map Location 16,772,301 - 16,985,679
singlet/doubletdoublet
Overlap geneDhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1
Upstream geneLOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2
Downstream geneBC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189M02.bB6Ng01-189M02.g
ACCGA013692GA013693
length900567
definitionB6Ng01-189M02.b B6Ng01-189M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,772,301 - 16,773,194)(16,985,107 - 16,985,679)
sequence
gaattcctacaaagaacacagcataaaaaccagctctgttgagatgactc
cgttggttaaagccacctccaccaagactagagaacacaagttcaattct
caggacccacgtggtggaaggagaaagtcaactctcataagctgtgccct
aacttctacatgcatgtcacagtgcagatatgagctctccctgtgaagta
aataccaaaagatgttctcaaaaaaaggagcataacaaaccttaaaaaga
ggttgagtttcagccaggcgtggtggcacatgcctttaatcccagcacct
gggaggcagaggcaggtggatttctgagttcgaggccagcctggtctaca
aagtgagttccaagacagccagggctacacagagaaaccctgcctcgaaa
aaaacaaacaaacaaacaaacaatcccaaagaggttgagtttctgtgtgg
gtggccagtttcagtggctgctcatacccaggatagctgtgacagtgaca
gtgattgacatggcagatagaaacccagcactgaaaccaacaaactcaag
ggccaacctgatacttgctgcaagataccacaaaactgcttgctttcagg
gagctcgaatcttagtacccgattatggagactaacaggctccatcgagc
ttcgtggatggtctgttccagatgtcatgtggacaccaacctagacacgt
ttcaagctgctaacagataatggcacagtgggtgtacagagcttgtgaat
gctctgtatgatatcagtaactgcagatgacttggcaatgtgtcacgaag
tgacaacatactatccacaacagctaatccccgaactacttcaatgatga
gaacgtggcaatggttagagttgtagaattgacagaagagctggagtcca

acacaaaatggcggcacagccgggacaagcacggaggctgaagccggagg
aagggcgtggagggagggggtagcggagaggccggaggagcgtcacgtgg
agaagggcagagccagcccgcccgaaagtcggcgaaaagagccgaagcgg
aagggcgaggcggaggagagggcacggaaagagccgaacacagctgagat
taacgagactctgaaaaaagccggaaagagccgagggaagatctaggtca
ctgcagcaacgcggagcggatcagagacccacctaaaggaccaagggtgg
tcgtgggggcggggctagggaaggccgggagagccggaaatagccgaagc
gcttcgggatgggagaagcccccccctgggggggggcgaggcgagagtcc
ggaaagagccgaagtcagggaagggatcccgggaggaggcggaagtagcc
gaaatacattgagcggagctaataggaattttcgaataacctgaacgggt
ggggctagataggcgatttattaactcaagggtaaatgactttcaggaac
tcgcccccaaagcaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16772301_16773194
seq2: B6Ng01-189M02.b_45_944

seq1  GAATTCCTACAAAGAACACAGCATAAAAACCAGCTCTGTTGAGATGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACAAAGAACACAGCATAAAAACCAGCTCTGTTGAGATGACTC  50

seq1  CGTTGGTTAAAGCCACCTCCACCAAGACTAGAGAACACAAGTTCAATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGTTAAAGCCACCTCCACCAAGACTAGAGAACACAAGTTCAATTCT  100

seq1  CAGGACCCACGTGGTGGAAGGAGAAAGTCAACTCTCATAAGCTGTGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCCACGTGGTGGAAGGAGAAAGTCAACTCTCATAAGCTGTGCCCT  150

seq1  AACTTCTACATGCATGTCACAGTGCAGATATGAGCTCTCCCTGTGAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTACATGCATGTCACAGTGCAGATATGAGCTCTCCCTGTGAAGTA  200

seq1  AATACCAAAAGATGTTCTCAAAAAAAGGAGCATAACAAACCTTAAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAAAGATGTTCTCAAAAAAAGGAGCATAACAAACCTTAAAAAGA  250

seq1  GGTTGAGTTTCAGCCAGGCGTGGTGGCACATGCCTTTAATCCCAGCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGTTTCAGCCAGGCGTGGTGGCACATGCCTTTAATCCCAGCACCT  300

seq1  GGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  350

seq1  AAGTGAGTTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGCCTCGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGCCTCGAAA  400

seq1  AAAACAAACAAACAAACAAACAATCCCAAAGAGGTTGAGTTTCTGTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAACAAACAAACAATCCCAAAGAGGTTGAGTTTCTGTGTGG  450

seq1  GTGGCCAGTTTCAGTGGCTGCTCATACCCAGGATAGCTGTGACAGTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCAGTTTCAGTGGCTGCTCATACCCAGGATAGCTGTGACAGTGACA  500

seq1  GTGATTGACATGGCAGATAGAAACCCAGCACTGAAACCAACAAACTCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGACATGGCAGATAGAAACCCAGCACTGAAACCAACAAACTCAAG  550

seq1  GGCCAACCTGATACTTGCTGCAAGATACCACAAAACTGCTTGCTTTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACCTGATACTTGCTGCAAGATACCACAAAACTGCTTGCTTTCAGG  600

seq1  GAGCTCGAATCTTAGTACCCGATTATGGAGACTAACAGGCTCCATCGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCGAATCTTAGTACCCGATTATGGAGACTAACAGGCTCCATCGAGC  650

seq1  TTCGTGGATGGTCTGTTCCAGATGTCATGTGGACACCAACCTAGACACG-  699
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCGTGGATGGTCTGTTCCAGATGTCATGTGGACACCAACCTAGACACGT  700

seq1  TTCAAGCTGCTAACAGATAATGGCACAGTGGGTGTACAGAGCTTGTGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCTGCTAACAGATAATGGCACAGTGGGTGTACAGAGCTTGTGAAT  750

seq1  GCTCTGTATGATATCAGTAACTGCAGATGACTT-GCAATGTGTCACGAAG  798
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTCTGTATGATATCAGTAACTGCAGATGACTTGGCAATGTGTCACGAAG  800

seq1  TGACAACATACTATCCACAACAGCTAAT-CCCGAACTAC-TCAATGATGA  846
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  TGACAACATACTATCCACAACAGCTAATCCCCGAACTACTTCAATGATGA  850

seq1  GAACGTGGCAATGG-TAGAGTTGTAG-ATTGACAGAAGAGCTGGTGTCCA  894
      |||||||||||||| ||||||||||| ||||||||||||||||| |||||
seq2  GAACGTGGCAATGGTTAGAGTTGTAGAATTGACAGAAGAGCTGGAGTCCA  900

seq1: chr7_16985107_16985679
seq2: B6Ng01-189M02.g_69_641 (reverse)

seq1  GCTTGCTTTGGGGGCGAGTTCCTGAAAGTCATTTACCCTTGAGTTAATTA  50
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTTGCTTTGGGGGCGAGTTCCTGAAAGTCATTTACCCTTGAGTTAATAA  50

seq1  ATCGCCTTTCTAGCCCCACCCGTTCAGCTTATTCGCTAATTCCTATTCGC  100
      ||||||| ||||||||||||||||||| |||||||  |||||||||| ||
seq2  ATCGCCTATCTAGCCCCACCCGTTCAGGTTATTCGAAAATTCCTATTAGC  100

seq1  TCCGCTCAATGTATTTCGGCTACTTCCGCCTCCTCCCGGGATCCCTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTCAATGTATTTCGGCTACTTCCGCCTCCTCCCGGGATCCCTTCCC  150

seq1  TGACTTCGGCTCTTTCCGGACTCTCGCCTCGCCCCCCCCCAGGGGGGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCGGCTCTTTCCGGACTCTCGCCTCGCCCCCCCCCAGGGGGGGGC  200

seq1  TTCTCCCATCCCGAAGCGCTTCGGCTATTTCCGGCTCTCCCGGCCTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCATCCCGAAGCGCTTCGGCTATTTCCGGCTCTCCCGGCCTTCCC  250

seq1  TAGCCCCGCCCCCACGACCACCCTTGGTCCTTTAGGTGGGTCTCTGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCGCCCCCACGACCACCCTTGGTCCTTTAGGTGGGTCTCTGATCC  300

seq1  GCTCCGCGTTGCTGCAGTGACCTAGATCTTCCCTCGGCTCTTTCCGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGCGTTGCTGCAGTGACCTAGATCTTCCCTCGGCTCTTTCCGGCTT  350

seq1  TTTTCAGAGTCTCGTTAATCTCAGCTGTGTTCGGCTCTTTCCGTGCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAGTCTCGTTAATCTCAGCTGTGTTCGGCTCTTTCCGTGCCCTC  400

seq1  TCCTCCGCCTCGCCCTTCCGCTTCGGCTCTTTTCGCCGACTTTCGGGCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGCCTCGCCCTTCCGCTTCGGCTCTTTTCGCCGACTTTCGGGCGG  450

seq1  GCTGGCTCTGCCCTTCTCCACGTGACGCTCCTCCGGCCTCTCCGCTACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTCTGCCCTTCTCCACGTGACGCTCCTCCGGCCTCTCCGCTACCC  500

seq1  CCTCCCTCCACGCCCTTCCTCCGGCTTCAGCCTCCGTGCTTGTCCCGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCACGCCCTTCCTCCGGCTTCAGCCTCCGTGCTTGTCCCGGCT  550

seq1  GTGCCGCCATTTTGTGTGAATTC  573
      |||||||||||||||||||||||
seq2  GTGCCGCCATTTTGTGTGAATTC  573