BAC Information

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BAC

Clone NameB6Ng01-193B17
Chromosome7 (Build37)
Map Location 53,805,137 - 53,970,906
singlet/doubletdoublet
Overlap geneSergef, Tph1, Saal1, Saa3
Upstream genePlekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1
Downstream geneSaa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193B17.bB6Ng01-193B17.g
ACCGA016171GA016172
length5091,131
definitionB6Ng01-193B17.b B6Ng01-193B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,805,137 - 53,805,650)(53,969,781 - 53,970,906)
sequence
atgtgactttgagtattagtagacgctggaaagatggctgaacgtgtgaa
caaaggaagggataaatgagtctacagcctagcagctggggggatgaggg
agggagaaacgcctcacattgcatcatggcgggagaggaaggaagcagcg
ggtgagaggaaggatgatgatggagaggcaggtgtaacgctgaggaagct
ggtgtgactgagcaggtgagaagccaccaagtaggttaaagacaatggga
acgagagggaaggaagggggagagagatgacaagggagtgattgactggg
ggaccaggagaaaggggacatcaaagtctcacagaagcctggaggcctgt
gcctaggactgtgacatcaggaaatgagaggtcggacagagaacaaggtg
cttcacagatatcggttcaccgcatccttatgaacttgagattgtggtag
tgttgggtcccgaccacatttctcttggctcttcccactactctgacctg
tgattgctg
gaattcactggatattatgctttctgcatggaacttgtagtgtgcttctg
tgtgaattcagggaagggtgcaatagccttctacagatagaatgcaggga
gctatgttggttagaaagcccccacatagccctctggaaacttcctttac
agttgggtttcagctggcatgattggagtgcaatgtgctttatattaatg
gtccatttgcaaacccttagatagtgggattctaatgaaatacaaggaaa
tggagaactagagagttccctgaaatccccttacctataatctttgtttg
tatgtgtgtgggtttatgtatgaaatccagtggggtttgttaccagtgtg
caaggatagatagctcagcactgcagaagcatcctccaccccacgaaatg
gcatgctcatctttgttttcctggccctatagcaggatgaagccttccat
tgccatcattctttgcatcttgatcctgggagttgacagccaaagatggg
tccagttcatgaaagaagctggtcaaggtaggcttcaaggatgggggctg
gaggttgtatttctgagttttaagaatttacttgagcagggaccacataa
tcaagggcaaacatgcttgtaaaatccccatagagtggcggtgtagctct
tcctgagaagtttgtagcttttttgctcagtgttgacctttttctgtgag
gatcccaaatctcagatcctgtaatgtttgtacagcagtctttccacggg
aatgtaggtgaaatctgtaggtcaaagatgtagactccccaatagaagtg
gggaagaggcctctactgcccccttgtggagagtgatgagcagttcacgt
ctatatctggttccagggaagggtgcggagggggaaaaccggggcagcag
tgacaacccaacagagacagcaaacaaggctaatttaaggtttgccacac
agagtgggcattgtccaaggagcataatgtatgggaaatgaattcataca
ttaaaattaattctggtgggccgtaggtgtcactactacctttagaacta
tgttacaaagaagcatacgttaagctatccttacttagaaacccctggaa
gaagccggaattagcccaaggttagcactat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_53805137_53805650
seq2: B6Ng01-193B17.b_43_557

seq1  GAATTCATGTGACTTTGAGTATTAGTAGACGCTGGAAAGATGGCTGAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGACTTTGAGTATTAGTAGACGCTGGAAAGATGGCTGAACG  50

seq1  TGTGAACAAAGGAAGGGATAAATGAGTCTACAGCCTAGCAGCTGGGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACAAAGGAAGGGATAAATGAGTCTACAGCCTAGCAGCTGGGGGGA  100

seq1  TGAGGGAGGGAGAAACGCCTCACATTGCATCATGGCGGGAGAGGAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGGGAGAAACGCCTCACATTGCATCATGGCGGGAGAGGAAGGAA  150

seq1  GCAGCGGGTGAGAGGAAGGATGATGATGGAGAGGCAGGTGTAACGCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGGGTGAGAGGAAGGATGATGATGGAGAGGCAGGTGTAACGCTGAG  200

seq1  GAAGCTGGTGTGACTGAGCAGGTGAGAAGCCACCAAGTAGGTTAAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGTGTGACTGAGCAGGTGAGAAGCCACCAAGTAGGTTAAAGACA  250

seq1  ATGGGAACGAGAGGGAAGGAAGGGGGAGAGAGATGACAAGGGAGTGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAACGAGAGGGAAGGAAGGGGGAGAGAGATGACAAGGGAGTGATTG  300

seq1  ACTGGGGGACCAGGAGAAAGGGGACATCAAAGTCTCACAGAAGCCTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGGACCAGGAGAAAGGGGACATCAAAGTCTCACAGAAGCCTGGAG  350

seq1  GCCTGTGCCTAGGACTGTGACATCAGGAAATGAGAGGTCGGACAGAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCCTAGGACTGTGACATCAGGAAATGAGAGGTCGGACAGAGAAC  400

seq1  AAGGTGCTTCACAGATATCGGTTCACCGCATCCTTATGAACTTGAGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCTTCACAGATATCGGTTCACCGCATCCTTATGAACTTGAGATTG  450

seq1  TGGTAGTGTTGGGTCCCGACCACATTTCTCTTGGCCCTT-CCACTACTCT  499
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  TGGTAGTGTTGGGTCCCGACCACATTTCTCTTGGCTCTTCCCACTACTCT  500

seq1  GACCTGTGATTGCTG  514
      |||||||||||||||
seq2  GACCTGTGATTGCTG  515

seq1: chr7_53969781_53970906
seq2: B6Ng01-193B17.g_64_1194 (reverse)

seq1  ATAGTGGCTAACC-TGGGCTAAATTCTGC-TCTTCCAGGGGTTTTCTAAG  48
      ||||| ||||||| |||||||| | | || ||||||||||| ||||||||
seq2  ATAGT-GCTAACCTTGGGCTAATTCCGGCTTCTTCCAGGGG-TTTCTAAG  48

seq1  TAA-GATAGCTT-ACGTATGC-TCTTTGT-ACATTGGTTTCCTTAAAGGG  94
      ||| |||||||| |||||||| ||||||| |||| |  |||  |||| ||
seq2  TAAGGATAGCTTAACGTATGCTTCTTTGTAACATAG--TTC--TAAA-GG  93

seq1  TAGTAGTGACACCTACG--CCACAAG-ATTAATTTTAATGTATGGAATTC  141
      |||||||||||||||||  |||| || |||||||||||||||| ||||||
seq2  TAGTAGTGACACCTACGGCCCACCAGAATTAATTTTAATGTAT-GAATTC  142

seq1  ATTT-CCATACATTATGCTCCTTGGACAATGCCCACTCTGTGTGGCAAAC  190
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCATACATTATGCTCCTTGGACAATGCCCACTCTGTGTGGCAAAC  192

seq1  --TTAATTAGCCTTGTTTGCTGTCTCTG-TGGGTTGTCACCTGCTGCCCC  237
        | |||||||||||||||||||||||| |||||||||| ||||||||||
seq2  CTTAAATTAGCCTTGTTTGCTGTCTCTGTTGGGTTGTCA-CTGCTGCCCC  241

seq1  GGTTTTCCCCCTCCGCA-CCTTCCCTGGAACCAGATATAGACGTGAACTG  286
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGTTTTCCCCCTCCGCACCCTTCCCTGGAACCAGATATAGACGTGAACTG  291

seq1  CTCATCACTCTCCACAAGGGGGCAGTAGAGGCCTCTTCCCCACTTCTATT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCACTCTCCACAAGGGGGCAGTAGAGGCCTCTTCCCCACTTCTATT  341

seq1  GGGGAGTCTACATCTTTGACCTACAGATTTCACCTACATTCCCGTGGAAA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTCTACATCTTTGACCTACAGATTTCACCTACATTCCCGTGGAAA  391

seq1  GACTGCTGTACAAACATTACAGGATCTGAGATTTGGGATCCTCACAGAAA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTGTACAAACATTACAGGATCTGAGATTTGGGATCCTCACAGAAA  441

seq1  AAGGTCAACACTGAGCAAAAAAGCTACAAACTTCTCAGGAAGAGCTACAC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAACACTGAGCAAAAAAGCTACAAACTTCTCAGGAAGAGCTACAC  491

seq1  CGCCACTCTATGGGGATTTTACAAGCATGTTTGCCCTTGATTATGTGGTC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACTCTATGGGGATTTTACAAGCATGTTTGCCCTTGATTATGTGGTC  541

seq1  CCTGCTCAAGTAAATTCTTAAAACTCAGAAATACAACCTCCAGCCCCCAT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCAAGTAAATTCTTAAAACTCAGAAATACAACCTCCAGCCCCCAT  591

seq1  CCTTGAAGCCTACCTTGACCAGCTTCTTTCATGAACTGGACCCATCTTTG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGCCTACCTTGACCAGCTTCTTTCATGAACTGGACCCATCTTTG  641

seq1  GCTGTCAACTCCCAGGATCAAGATGCAAAGAATGATGGCAATGGAAGGCT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAACTCCCAGGATCAAGATGCAAAGAATGATGGCAATGGAAGGCT  691

seq1  TCATCCTGCTATAGGGCCAGGAAAACAAAGATGAGCATGCCATTTCGTGG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGCTATAGGGCCAGGAAAACAAAGATGAGCATGCCATTTCGTGG  741

seq1  GGTGGAGGATGCTTCTGCAGTGCTGAGCTATCTATCCTTGCACACTGGTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGATGCTTCTGCAGTGCTGAGCTATCTATCCTTGCACACTGGTA  791

seq1  ACAAACCCCACTGGATTTCATACATAAACCCACACACATACAAACAAAGA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCCACTGGATTTCATACATAAACCCACACACATACAAACAAAGA  841

seq1  TTATAGGTAAGGGGATTTCAGGGAACTCTCTAGTTCTCCATTTCCTTGTA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTAAGGGGATTTCAGGGAACTCTCTAGTTCTCCATTTCCTTGTA  891

seq1  TTTCATTAGAATCCCACTATCTAAGGGTTTGCAAATGGACCATTAATATA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAGAATCCCACTATCTAAGGGTTTGCAAATGGACCATTAATATA  941

seq1  AAGCACATTGCACTCCAATCATGCCAGCTGAAACCCAACTGTAAAGGAAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATTGCACTCCAATCATGCCAGCTGAAACCCAACTGTAAAGGAAG  991

seq1  TTTCCAGAGGGCTATGTGGGGGCTTTCTAACCAACATAGCTCCCTGCATT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAGGGCTATGTGGGGGCTTTCTAACCAACATAGCTCCCTGCATT  1041

seq1  CTATCTGTAGAAGGCTATTGCACCCTTCCCTGAATTCACACAGAAGCACA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTAGAAGGCTATTGCACCCTTCCCTGAATTCACACAGAAGCACA  1091

seq1  CTACAAGTTCCATGCAGAAAGCATAATATCCAGTGAATTC  1126
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGTTCCATGCAGAAAGCATAATATCCAGTGAATTC  1131