BAC Information

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BAC

Clone NameB6Ng01-193L05
Chromosome7 (Build37)
Map Location 26,482,189 - 26,483,296
singlet/doubletsinglet
Overlap geneTgfb1
Upstream geneBC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440
Downstream geneCcdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193L05.bB6Ng01-193L05.g
ACCGA016597GA016598
length1,0811,116
definitionB6Ng01-193L05.b B6Ng01-193L05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactggtcttaccacgttccccatcatcctgaagcagctggtctg
atagaaagatggaacggccttttgaagacgcagttacagtgccaattagg
tggtaacagcttggaaggctggggtagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaaaggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcctagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacatttcattgaactggaaactcagacttccccc
tggtcattttgggcttctaatgcccctaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggcgaaattgga
ttacctcttcacaatggtggtaagcaagattatgcctggagtgtaggaga
ccccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggacgcagaccca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggtgaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaggcccacgtaaccagttgcagaaacgagg
attataaagtaatatgaatgcccattgtaaatttactaatgcgtttgcga
ttgtacgaagggataagttatatcatgtttaggcgtatttacaccttggt
attgtttcattgtgaaccatgagatattatttgtgtcaagttgacaaggg
gtggaattgtaattggctcattcctggttgtccacctggaacaatatttg
aaacgaactccattccggaaattggaagggcttcacccactgaacccttt
atcctgaaggccttgtgaatatcccttaact
gaattcaagacagtctgggctaaaggagtgaatctgaggccagcctggat
tacacagcaaagccctgtctcgaacaaaaccaaacaaaggagaactaaca
agatggctcagcaggcaaaggtgctcgcagccaggcccaatgacctgagt
cttatatctgggactcacatggtggaaggagaacggactcccaacagttg
tcctctgaccgtcacacagttttgtggcatggatgcccctacatacacac
agacacacacacacaatggccctacacacacacagagatataacttaaaa
acaatgaccaaaaagctttggcccttggtacgggcattctggatacacta
ggacgcccactctctgactctgagagatcttgtctcctcagagttcccta
tctcagtactatattccaacacttcacacttccaagcctacatacatctc
agaagttctatcttctcacctcctcagggtgcaccactgccagataaagc
gctggccctcaggaaactcactttctggctttctccacctccactctaga
tgctaacatctccctgccagccctgccattctgagacccaggatttgccg
ctctcatccaccagcactggagaccaccatctgccaagagtgtgggaacc
cagtgcagaccaccttctgattcggaacccaaatgtttggatcccagcac
tccagctttcctggggtcaacacgctccatggctcacagtaaattctttc
attagcatcccaaagtggcagaagcctggcaagaattttaaaacccaacc
agacaaccttccaacagactttccaactcttgttgaatttccctgatccc
agcactccaggaagaaaaacacccctcattctaggactctcagctgccca
cagaaccaggaacttgtccccaagccctgcaggcatacatggtggcacca
ccagtcacaggctgcagtcaagccgcagccttgcacagctcgggagaaga
gaacaggtgttacctgaagcaataagttggttattccaagggcttctcgg
tgccggtagctggtgcaagtgcctggcccttcagggggtggccatgaaga
gcatgaaggcggttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_26482189_26483296
seq2: B6Ng01-193L05.g_66_1179 (reverse)

seq1  TGAACCGGCCCTTCCTGCTCCTCATGGCCACCCCCCTGGAAAGGGCCCAG  50
      |||||||  ||||| ||||| ||||||||| |||||||  |||||||  |
seq2  TGAACCG--CCTTCATGCTCTTCATGGCCA-CCCCCTG--AAGGGCCAGG  45

seq1  CACCTGCA-CAGCTCACGGCACCGGAGAGCCC-TGGA--TACCAAC-TAT  95
      ||| |||| |||||  ||||||||   ||||| ||||   |||||| |||
seq2  CACTTGCACCAGCTACCGGCACCGAGAAGCCCTTGGAATAACCAACTTAT  95

seq1  TGCTTCAGGTAAACACTG-TCTC-TCTCCGAGGCTGTGC-AGGCTGCGGG  142
      ||||||||||||   ||| |||| |||||   ||||||| ||||||||| 
seq2  TGCTTCAGGTAACACCTGTTCTCTTCTCCCGAGCTGTGCAAGGCTGCGGC  145

seq1  CTGACTGCAGCCTGTGGACTGGT-GTGCCACCATGTATGCCTGCAGGGCT  191
       |||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  TTGACTGCAGCCTGT-GACTGGTGGTGCCACCATGTATGCCTGCAGGGCT  194

seq1  TGGGGACAAGTTCCTGGTTCTGTGGGCAGCTGAGAGTCCTAGAATGAGGG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACAAGTTCCTGGTTCTGTGGGCAGCTGAGAGTCCTAGAATGAGGG  244

seq1  GTG-TTTTCTTCCTGGAGTGCTGGGATCAGGG-AATTCAACAAGAGTTGG  289
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGTTTTTCTTCCTGGAGTGCTGGGATCAGGGAAATTCAACAAGAGTTGG  294

seq1  -AAGTCTGTTGGAAGGTTGTCTGGTTGGGTTTTAAAATTCTTGCCAGGCT  338
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGTTGGAAGGTTGTCTGGTTGGGTTTTAAAATTCTTGCCAGGCT  344

seq1  TCTGCCACTTTGGGATGCTAATGAAAGAATTTACTGTGAGCCATGGAGCG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACTTTGGGATGCTAATGAAAGAATTTACTGTGAGCCATGGAGCG  394

seq1  TGTTGACCCCAGGAAAGCTGGAGTGCTGGGATCCAAACATTTGGGTTCCG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACCCCAGGAAAGCTGGAGTGCTGGGATCCAAACATTTGGGTTCCG  444

seq1  AATCAGAAGGTGGTCTGCACTGGGTTCCCACACTCTTGGCAGATGGTGGT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAAGGTGGTCTGCACTGGGTTCCCACACTCTTGGCAGATGGTGGT  494

seq1  CTCCAGTGCTGGTGGATGAGAGCGGCAAATCCTGGGTCTCAGAATGGCAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGCTGGTGGATGAGAGCGGCAAATCCTGGGTCTCAGAATGGCAG  544

seq1  GGCTGGCAGGGAGATGTTAGCATCTAGAGTGGAGGTGGAGAAAGCCAGAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCAGGGAGATGTTAGCATCTAGAGTGGAGGTGGAGAAAGCCAGAA  594

seq1  AGTGAGTTTCCTGAGGGCCAGCGCTTTATCTGGCAGTGGTGCACCCTGAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTTCCTGAGGGCCAGCGCTTTATCTGGCAGTGGTGCACCCTGAG  644

seq1  GAGGTGAGAAGATAGAACTTCTGAGATGTATGTAGGCTTGGAAGTGTGAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGAAGATAGAACTTCTGAGATGTATGTAGGCTTGGAAGTGTGAA  694

seq1  GTGTTGGAATATAGTACTGAGATAGGGAACTCTGAGGAGACAAGATCTCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGAATATAGTACTGAGATAGGGAACTCTGAGGAGACAAGATCTCT  744

seq1  CAGAGTCAGAGAGTGGGCGTCCTAGTGTATCCAGAATGCCCGTACCAAGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCAGAGAGTGGGCGTCCTAGTGTATCCAGAATGCCCGTACCAAGG  794

seq1  GCCAAAGCTTTTTGGTCATTGTTTTTAAGTTATATCTCTGTGTGTGTGTA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGCTTTTTGGTCATTGTTTTTAAGTTATATCTCTGTGTGTGTGTA  844

seq1  GGGCCATTGTGTGTGTGTGTCTGTGTGTATGTAGGGGCATCCATGCCACA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATTGTGTGTGTGTGTCTGTGTGTATGTAGGGGCATCCATGCCACA  894

seq1  AAACTGTGTGACGGTCAGAGGACAACTGTTGGGAGTCCGTTCTCCTTCCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGTGACGGTCAGAGGACAACTGTTGGGAGTCCGTTCTCCTTCCA  944

seq1  CCATGTGAGTCCCAGATATAAGACTCAGGTCATTGGGCCTGGCTGCGAGC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAGTCCCAGATATAAGACTCAGGTCATTGGGCCTGGCTGCGAGC  994

seq1  ACCTTTGCCTGCTGAGCCATCTTGTTAGTTCTCCTTTGTTTGGTTTTGTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGCCTGCTGAGCCATCTTGTTAGTTCTCCTTTGTTTGGTTTTGTT  1044

seq1  CGAGACAGGGCTTTGCTGTGTAATCCAGGCTGGCCTCAGATTCACTCCTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGCTTTGCTGTGTAATCCAGGCTGGCCTCAGATTCACTCCTT  1094

seq1  TAGCCCAGACTGTCTTGAAT  1108
      ||||||||||||||||||||
seq2  TAGCCCAGACTGTCTTGAAT  1114