BAC Information

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BAC

Clone NameB6Ng01-194J04
Chromosome7 (Build37)
Map Location 21,188,600 - 21,332,698
singlet/doubletdoublet
Overlap geneLOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559
Upstream geneSfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976
Downstream geneLOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135, LOC100042996, EG667273, EG667268, EG667262, EG667259, LOC100043574, LOC100043576, Gm1447, LOC100043006, LOC100043583, EG435953, LOC673902, EG667240, EG435951, Gm1446, LOC381937, LOC100043588, LOC670764, EG667215, LOC100043013, LOC621561, EG667199, EG621510, LOC667186, EG628475, LOC100043595, LOC100043596, LOC667358, LOC100043016
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194J04.bB6Ng01-194J04.g
ACCGA017228GA017229
length955909
definitionB6Ng01-194J04.b B6Ng01-194J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,188,600 - 21,189,614)(21,331,791 - 21,332,698)
sequence
gaattcatgtagtatataggcatataggcaggcaaaacatccagtcacat
aaaattttaaaaactgaaaaaattttaagagacactaaaaaaaaatcagg
agagaagcaatgaaggagaaggtaaagcagtatgggagaaaatatgttta
atgtagtctatacttgcatactgtactagtcagggttatctagagtcaca
gaatgtaaggaatgtttctctatattgagggaatttattgtaatgactta
caatctgtagtccaatttatcaatgatggtcagctgttaattggaagtcc
aagaatctagtagttgctcagtcccacgaggctagttgtttcagcttttt
ttcagtagaagtagattccaacagatgtgttggcaagtaaatgcaagtgg
taacaaagactgaatctcccttcttccaatgaacttatataggtctccct
caggaggtgtggcccagattaaaggtgtgtactaccatgtctggatctgg
gacttgtaccaggctgaccttgaactcagagatctcctggctttagtctc
ctgggattaaaggtgtgtactatcttgccttggcctaatcttttcatagt
cattttgcctcaagatctccatgccaagacttaggtcagaaacttgtgtc
ttctagcctcaagatctggatcacaggtgagccctccaattctggatttt
ggttcattccagatatagtcaacttgacaacaacgaatagccattacaca
tacaaatgtcccttagtaacaaagccatgtacaatggatgtacacaatga
gaattattttaataataaaaaatataagtcagtgtgatggtttgtatatc
cttggatcagggagtggcaccatctgaagttgtgggctttgttggaatag
gtgtgacatggttggaatgggtgtgtcactctgggtgtgggtataagatc
tctca
gaattcaacttgccctcacatctggcttgctctgaaatcaatttctttgt
tgaatccagaaaccctggttttgtctgagtgtgtgtgtgtgggcaggggg
gtctgaaaataattccccaggcagctgccactgtggtgtgggtctgtttt
cccatcattagtgacaacccaactagatcagacactgcaggaagaggaaa
cgtagaagaacccagaccagacttctgctctggccaacatacctgcagca
gcccctcatctatcatagtcactgtaagaaataaactgttgtggtccatt
ttcagtgtgctctgaactcagagatcaaagaagcacatattgaaaccagg
aggccaaacccccaccccaatctcctctaattggtggccagcaatttgca
gaactgcaaagttacaggcagtcttccttgtgtctgaagctgcaaacaga
aaaggggtctgcctcaaccatgaatattccttagatgaggcgttgcttcc
taaaataatctgatgggggaatttaggaaagcatttaaatgccagactac
aggaagaagaactgtgaggcatgatacagttgttgcatacacagactcac
cgtggctggggttgcctgagcaagaccaagccagtcaacattcttgcatg
gatggaagagggggtgtaaggtcccactcctatctgaggagctaatggta
tttgacagctactgagaaggagaaccagtctttccatgaggaggacacac
ccctggtagttgccagtgttcatgtgagtgatcccatatttgtgcatgta
tgggggagcactaatgggactatatttagcttgaaatttcatgagcaaat
catgtacttacatgagaaacaacaaagacctctacccaaatcagaaggaa
atagtaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_21188600_21189614
seq2: B6Ng01-194J04.b_46_1000

seq1  GAATTCATGTAGTATATAGGCATATAGGCAGGCAAAACATCCAGTCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGTATATAGGCATATAGGCAGGCAAAACATCCAGTCACAT  50

seq1  AAAATTTTAAAAACTGAAAAAATTTTAAGAGACACTAAAAAAAAATCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTAAAAACTGAAAAAATTTTAAGAGACACTAAAAAAAAATCAGG  100

seq1  AGAGAAGCAATGAAGGAGAAGGTAAAGCAGTATGGGAGAAAATATGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCAATGAAGGAGAAGGTAAAGCAGTATGGGAGAAAATATGTTTA  150

seq1  ATGTAGTCTATACTTGCATACTGTACTAGTCAGGGTTATCTAGAGTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTCTATACTTGCATACTGTACTAGTCAGGGTTATCTAGAGTCACA  200

seq1  GAATGTAAGGAATGTTTCTCTATATTGAGGGAATTTATTGTAATGACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAAGGAATGTTTCTCTATATTGAGGGAATTTATTGTAATGACTTA  250

seq1  CAATCTGTAGTCCAATTTATCAATGATGGTCAGCTGTTAATTGGAAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGTAGTCCAATTTATCAATGATGGTCAGCTGTTAATTGGAAGTCC  300

seq1  AAGAATCTAGTAGTTGCTCAGTCCCACGAGGCTAGTTGTTTCAGCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTAGTAGTTGCTCAGTCCCACGAGGCTAGTTGTTTCAGCTTTTT  350

seq1  TTCAGTAGAAGTAGATTCCAACAGATGTGTTGGCAAGTAAATGCAAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGAAGTAGATTCCAACAGATGTGTTGGCAAGTAAATGCAAGTGG  400

seq1  TAACAAAGACTGAATCTCCCTTCTTCCAATGAACTTATATAGGTCTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGACTGAATCTCCCTTCTTCCAATGAACTTATATAGGTCTCCCT  450

seq1  CAGGAGGTGTGGCCCAGATTAAAGGTGTGTACTACCATGTCTGGATCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGTGTGGCCCAGATTAAAGGTGTGTACTACCATGTCTGGATCTGG  500

seq1  GACTTGTACCAGGCTGACCTTGAACTCAGAGATCTCCTGGCTTTAGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTACCAGGCTGACCTTGAACTCAGAGATCTCCTGGCTTTAGTCTC  550

seq1  CTGGGATTAAAGGTGTGTACTATCTTGCCTTGGCCTAATCTTTTCATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGTGTGTACTATCTTGCCTTGGCCTAATCTTTTCATAGT  600

seq1  CATTTTGCCTCAAGATCTCCATGCCAAGACTTAGGTCAGAAACTTGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCCTCAAGATCTCCATGCCAAGACTTAGGTCAGAAACTTGTGTC  650

seq1  TTCTAGCCTCAAGATCTGGATCACAGGTGAGCCCTCCAATTCTGGATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCCTCAAGATCTGGATCACAGGTGAGCCCTCCAATTCTGGATTTT  700

seq1  GGTTCATTCCAGATATAGTCAACTTGACAACAACGAATAGCCATTACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATTCCAGATATAGTCAACTTGACAACAACGAATAGCCATTACACA  750

seq1  TACAAATGTCCCTTAGTAACAAAGCCATGTACAATGGATGTACACAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGTCCCTTAGTAACAAAGCCATGTACAATGGATGTACACAATGA  800

seq1  GAATTATTTTAATAATAAAAAATATAAGTCAGTGTGATGGTTTGTATATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTTTAATAATAAAAAATATAAGTCAGTGTGATGGTTTGTATATC  850

seq1  CTTGGATCAGGGAGTGGCACCATCTGAAGTTGT-GGCCTTGTTGGAATAG  899
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  CTTGGATCAGGGAGTGGCACCATCTGAAGTTGTGGGCTTTGTTGGAATAG  900

seq1  GTGTGACATGGTTGGAATGGGTGTGTCACTCTGGGTGTGGGTATAAGATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACATGGTTGGAATGGGTGTGTCACTCTGGGTGTGGGTATAAGATC  950

seq1  -CTCACCCTAGTTGCCTGGAAGTCAGTCTTCCACTGGCTGACTTTGGATG  998
       ||||                                             
seq2  TCTCA---------------------------------------------  955

seq1  AAGACATAGAACTCTCA  1015
                       
seq2  -----------------  955

seq1: chr7_21331791_21332698
seq2: B6Ng01-194J04.g_66_974 (reverse)

seq1  GATTACTATTTCCTTCTGATTTGGGTTGATGTCTTTGTTGTTTCTCATGT  50
      |||||||||||||||||||||||||| || ||||||||||||||||||||
seq2  GATTACTATTTCCTTCTGATTTGGGTAGAGGTCTTTGTTGTTTCTCATGT  50

seq1  AAAGTACATGATTTGCTCATGAAATTTCAAGCTAAATATAGTCCCATTAG  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAGTACATGATTTGCTCATGAAATTTCAAGCTAAATATAGTCCCATTAG  99

seq1  TGCT-CCCCATACATGCACAAATATGGGATCACTCACATGAACACTGGCA  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCCATACATGCACAAATATGGGATCACTCACATGAACACTGGCA  149

seq1  ACTACCAGGGGTGTGTCCTCCTCATGG-AAGACTGGTTCTCCTTCTCAGT  198
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTACCAGGGGTGTGTCCTCCTCATGGAAAGACTGGTTCTCCTTCTCAGT  199

seq1  AGCTGTCAAATACCATTAGCTCCTCAGATAGGAGTGGGACCTTACACCCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCAAATACCATTAGCTCCTCAGATAGGAGTGGGACCTTACACCCC  249

seq1  CTCTTCCATCCATGCAAGAATGTTGACTGGCTTGGTCTTGCTCAGGCAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCATCCATGCAAGAATGTTGACTGGCTTGGTCTTGCTCAGGCAAC  299

seq1  CCCAGCCACGGTGAGTCTGTGTATGCAACAACTGTATCATGCCTCACAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCACGGTGAGTCTGTGTATGCAACAACTGTATCATGCCTCACAGT  349

seq1  TCTTCTTCCTGTAGTCTGGCATTTAAATGCTTTCCTAAATTCCCCCATCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCTGTAGTCTGGCATTTAAATGCTTTCCTAAATTCCCCCATCA  399

seq1  GATTATTTTAGGAAGCAACGCCTCATCTAAGGAATATTCATGGTTGAGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTTAGGAAGCAACGCCTCATCTAAGGAATATTCATGGTTGAGGC  449

seq1  AGACCCCTTTTCTGTTTGCAGCTTCAGACACAAGGAAGACTGCCTGTAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTTTTCTGTTTGCAGCTTCAGACACAAGGAAGACTGCCTGTAAC  499

seq1  TTTGCAGTTCTGCAAATTGCTGGCCACCAATTAGAGGAGATTGGGGTGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTTCTGCAAATTGCTGGCCACCAATTAGAGGAGATTGGGGTGGG  549

seq1  GGTTTGGCCTCCTGGTTTCAATATGTGCTTCTTTGATCTCTGAGTTCAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGCCTCCTGGTTTCAATATGTGCTTCTTTGATCTCTGAGTTCAGA  599

seq1  GCACACTGAAAATGGACCACAACAGTTTATTTCTTACAGTGACTATGATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGAAAATGGACCACAACAGTTTATTTCTTACAGTGACTATGATA  649

seq1  GATGAGGGGCTGCTGCAGGTATGTTGGCCAGAGCAGAAGTCTGGTCTGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGGGCTGCTGCAGGTATGTTGGCCAGAGCAGAAGTCTGGTCTGGG  699

seq1  TTCTTCTACGTTTCCTCTTCCTGCAGTGTCTGATCTAGTTGGGTTGTCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTACGTTTCCTCTTCCTGCAGTGTCTGATCTAGTTGGGTTGTCAC  749

seq1  TAATGATGGGAAAACAGACCCACACCACAGTGGCAGCTGCCTGGGGAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGGGAAAACAGACCCACACCACAGTGGCAGCTGCCTGGGGAATT  799

seq1  ATTTTCAGACCCCCCTGCCCACACACACACACTCAGACAAAACCAGGGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGACCCCCCTGCCCACACACACACACTCAGACAAAACCAGGGTT  849

seq1  TCTGGATTCAACAAAGAAATTGATTTCAGAGCAAGCCAGATGTGAGGGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTCAACAAAGAAATTGATTTCAGAGCAAGCCAGATGTGAGGGCA  899

seq1  AGTTGAATTC  908
      ||||||||||
seq2  AGTTGAATTC  909