BAC Information

Click to search

BAC

Clone NameB6Ng01-197D01
Chromosome7 (Build37)
Map Location 3,709,705 - 3,964,890
singlet/doubletdoublet
Overlap geneLOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1
Downstream geneTtyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197D01.bB6Ng01-197D01.g
ACCGA019121GA019122
length1,039897
definitionB6Ng01-197D01.b B6Ng01-197D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,964,106 - 3,964,890)(3,709,705 - 3,710,594)
sequence
gaattccaggacaaccagggatatacagagaaacccggtctccaaaaaaa
caaaacaaaaaaaacaaaacaaaacaaaaaaaaactaaaaaagaaagtat
aatgcgtgttattccattttgaatatgctatttaatatttgcactatgca
acttaacatagtatttattactattacccacatgtaggtaaacaccattt
attatgatagctttatgtaatttatttccttgaaagataacattcagtag
taaatgacatgttatttatatattaatttatgtgatagaagttagctgta
atgtgctattttctttctcgtcccaagttcccagaataacaactcagact
caaatatatatttacaaatactgaggccatatagctaggctcattccctc
actagctaatgatgtagaataacccatttgtactaatctaaattctgcca
catggctggttaccatgtatctgtcctccttacatcttccctgatgactc
tgagcctgtctctatctcagaattctttctgcctccttggttccccacct
tctattctaccttttcttatatgctatcattttttgaaaaagatttattt
attgtatgtatatgagtacattgtagctgtctttgacacactagaagaag
acattgaatctgctacagatggttgtgagccaccatgtggttgcttggaa
gtgaactcaggacctctggaaaagcagtcagtgctcttacctgctgagac
atctctctaacttggccataggtttttaattgataggtgatgcattcata
caatacctaagatattctcgctactgttggaatataattttattttatat
tttcttattatgttttttatttgcctagatatgtgtgttatgtacatagg
tatgtttgtgcgttcactgtgttggcatgcatgtgggtgcagtgaatata
tatgcatatatgtctgtgtaagtccacgactgatgctaagcttattattt
aagtgttctcacacattgaagtataatctctgactggac
gaattctgtctgacatggattaggtatggatttgagtctgttttcatcat
gtttaaacagggtttgtaattattacacctcttccagaggcaccatagtc
catggctacactgagagcgagggtctgacagggatcctgtgaatattgtt
tatttgagagtgaggagaagaggttggcaatgggaaccagtccttgcata
ggatcctatatatgtctgtggcctccccaaaatggtttttctaactacct
gaaatctttggattccattagcagggagcatccctagaatgattcaggtt
gcctcccacactcatgagggtgaatatccatctgactgacactctgtagc
tttaaaccctatgctagctaatatttattgtaaatgtaaaattctgagac
actcctttatctcagaaagatctagattttctttcctttgaccatgaact
gcagagtcagtgctgtatgacaacacattggaagataggtatgtatagca
cctgaagatgctcctaagggtggatgtcagactcatagaggatcttagta
ttatgccccatgagctagactgaagcagccggagtcccccaccatggcta
tttgacccaccccttgccatgcatcagtagactgtgggctagacccaacc
tgcagaattaggttctgtggacctcctcttttcaggagaggtaacagctt
tgaccatcaccaaaaatacatagacacgtgtaccagctagtttttgtgtg
taaacttgacacagctggagttatcacagagaaaggagcttcagttgagg
aaatgcctccatgatatacaactgtaaggcattttctcatttagtgatca
agggggaaaggccccttgtggtttgatgcccatctctcagctggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3964106_3964890
seq2: B6Ng01-197D01.b_43_827 (reverse)

seq1  TATCAATTAAAAACCTATGGCCAAGTTAGAGAGATGTCTCAGCAGGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTAAAAACCTATGGCCAAGTTAGAGAGATGTCTCAGCAGGTAAG  50

seq1  AGCACTGACTGCTTTTCCAGAGGTCCTGAGTTCACTTCCAAGCAACCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGACTGCTTTTCCAGAGGTCCTGAGTTCACTTCCAAGCAACCACA  100

seq1  TGGTGGCTCACAACCATCTGTAGCAGATTCAATGTCTTCTTCTAGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTCACAACCATCTGTAGCAGATTCAATGTCTTCTTCTAGTGTGT  150

seq1  CAAAGACAGCTACAATGTACTCATATACATACAATAAATAAATCTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAGCTACAATGTACTCATATACATACAATAAATAAATCTTTTTC  200

seq1  AAAAAATGATAGCATATAAGAAAAGGTAGAATAGAAGGTGGGGAACCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGATAGCATATAAGAAAAGGTAGAATAGAAGGTGGGGAACCAAG  250

seq1  GAGGCAGAAAGAATTCTGAGATAGAGACAGGCTCAGAGTCATCAGGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAAAGAATTCTGAGATAGAGACAGGCTCAGAGTCATCAGGGAAG  300

seq1  ATGTAAGGAGGACAGATACATGGTAACCAGCCATGTGGCAGAATTTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGGAGGACAGATACATGGTAACCAGCCATGTGGCAGAATTTAGAT  350

seq1  TAGTACAAATGGGTTATTCTACATCATTAGCTAGTGAGGGAATGAGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAAATGGGTTATTCTACATCATTAGCTAGTGAGGGAATGAGCCTA  400

seq1  GCTATATGGCCTCAGTATTTGTAAATATATATTTGAGTCTGAGTTGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATGGCCTCAGTATTTGTAAATATATATTTGAGTCTGAGTTGTTAT  450

seq1  TCTGGGAACTTGGGACGAGAAAGAAAATAGCACATTACAGCTAACTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAACTTGGGACGAGAAAGAAAATAGCACATTACAGCTAACTTCTA  500

seq1  TCACATAAATTAATATATAAATAACATGTCATTTACTACTGAATGTTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAATTAATATATAAATAACATGTCATTTACTACTGAATGTTATC  550

seq1  TTTCAAGGAAATAAATTACATAAAGCTATCATAATAAATGGTGTTTACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGAAATAAATTACATAAAGCTATCATAATAAATGGTGTTTACCT  600

seq1  ACATGTGGGTAATAGTAATAAATACTATGTTAAGTTGCATAGTGCAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGGTAATAGTAATAAATACTATGTTAAGTTGCATAGTGCAAATA  650

seq1  TTAAATAGCATATTCAAAATGGAATAACACGCATTATACTTTCTTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGCATATTCAAAATGGAATAACACGCATTATACTTTCTTTTTTA  700

seq1  GTTTTTTTTTGTTTTGTTTTGTTTTTTTTGTTTTGTTTTTTTGGAGACCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTGTTTTGTTTTGTTTTTTTTGTTTTGTTTTTTTGGAGACCG  750

seq1  GGTTTCTCTGTATATCCCTGGTTGTCCTGGAATTC  785
      |||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTATATCCCTGGTTGTCCTGGAATTC  785

seq1: chr7_3709705_3710594
seq2: B6Ng01-197D01.g_66_962

seq1  GAATTCTGTCTGACATGGATTAGGTATGGATTTGAGTCTGTTTTCATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTGACATGGATTAGGTATGGATTTGAGTCTGTTTTCATCAT  50

seq1  GTTTAAACAGGGTTTGTAATTATTACACCTCTTCCAGAGGCACCATAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAACAGGGTTTGTAATTATTACACCTCTTCCAGAGGCACCATAGTC  100

seq1  CATGGCTACACTGAGAGCGAGGGTCTGACAGGGATCCTGTGAATATTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTACACTGAGAGCGAGGGTCTGACAGGGATCCTGTGAATATTGTT  150

seq1  TATTTGAGAGTGAGGAGAAGAGGTTGGCAATGGGAACCAGTCCTTGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGAGTGAGGAGAAGAGGTTGGCAATGGGAACCAGTCCTTGCATA  200

seq1  GGATCCTATATATGTCTGTGGCCTCCCCAAAATGGTTTTTCTAACTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTATATATGTCTGTGGCCTCCCCAAAATGGTTTTTCTAACTACCT  250

seq1  GAAATCTTTGGATTCCATTAGCAGGGAGCATCCCTAGAATGATTCAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTTGGATTCCATTAGCAGGGAGCATCCCTAGAATGATTCAGGTT  300

seq1  GCCTCCCACACTCATGAGGGTGAATATCCATCTGACTGACACTCTGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCACACTCATGAGGGTGAATATCCATCTGACTGACACTCTGTAGC  350

seq1  TTTAAACCCTATGCTAGCTAATATTTATTGTAAATGTAAAATTCTGAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCCTATGCTAGCTAATATTTATTGTAAATGTAAAATTCTGAGAC  400

seq1  ACTCCTTTATCTCAGAAAGATCTAGATTTTCTTTCCTTTGACCATGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTTATCTCAGAAAGATCTAGATTTTCTTTCCTTTGACCATGAACT  450

seq1  GCAGAGTCAGTGCTGTATGACAACACATTGGAAGATAGGTATGTATAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTCAGTGCTGTATGACAACACATTGGAAGATAGGTATGTATAGCA  500

seq1  CCTGAAGATGCTCCTAAGGGTGGATGTCAGACTCATAGAGGATCTTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGATGCTCCTAAGGGTGGATGTCAGACTCATAGAGGATCTTAGTA  550

seq1  TTATGCCCCATGAGCTAGACTGAAGCAGCCGGAGTCCCCCACCATGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCCCATGAGCTAGACTGAAGCAGCCGGAGTCCCCCACCATGGCTA  600

seq1  TTTGACCCA-CCCTTGCCATGCATCAGTAGACTGTGGGCTAGACC--AAC  647
      ||||||||| |||||||||||||||||||||||||||||||||||  | |
seq2  TTTGACCCACCCCTTGCCATGCATCAGTAGACTGTGGGCTAGACCCAACC  650

seq1  TGCAGAATTAGGTTCTGTGGACCTCCTC-TTTCAGGAGAGGTAACAGCTT  696
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGCAGAATTAGGTTCTGTGGACCTCCTCTTTTCAGGAGAGGTAACAGCTT  700

seq1  TGACCATCACCAAAAATACATAGACACGTGTACCAGCTAG-TTTTGTGTG  745
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGACCATCACCAAAAATACATAGACACGTGTACCAGCTAGTTTTTGTGTG  750

seq1  TAAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGG  800

seq1  AAATGCCTCCATGAGATACAACTGTAAGGCATTTTCTCAATTAGTGATCA  845
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  AAATGCCTCCATGATATACAACTGTAAGGCATTTTCTCATTTAGTGATCA  850

seq1  AGGGGGAAAGGCCCCTTGTGG-TTGATG-CCATCTCTCAGCTGGTAG  890
      ||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  AGGGGGAAAGGCCCCTTGTGGTTTGATGCCCATCTCTCAGCTGGTAG  897