BAC Information

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BAC

Clone NameB6Ng01-206P05
Chromosome7 (Build37)
Map Location 12,572,031 - 12,674,047
singlet/doubletdoublet
Overlap geneLOC628946, LOC100043075
Upstream geneEG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423
Downstream geneLOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206P05.bB6Ng01-206P05.g
ACCGA026230GA026231
length1,099216
definitionB6Ng01-206P05.b B6Ng01-206P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,672,948 - 12,674,047)(12,572,031 - 12,572,246)
sequence
gaattccactgtatgtgtatagaataatttatacacattgggtatagaat
catgaaatgcttttagcatgaactatcctgaaggaggttgctgtgagttt
tgctttaattgaattccaatgcacataggaatgcttttcaaagaagcagc
ttctgtgaagcatcactacacattgggatttgccttttttgataaaactt
cagaacatttaaaaatgactataattgtagcaatgtttccagtagaagta
tcagagggctgctctttgatgtaatgtcattcatttcatgcaggcagaat
ttaacattgatttttaatacatgttttgaaaaataatataattctatttt
ctcatggctgctcctaaaacatgaagaaatgtgtatttttctttgtgatt
tttgtccacaaaaaatatttttcccaaaaaaatttactctggggttaaag
agatagaagacaagaacaactcctgtttctgtggagcactcagttgagtc
cccagaaccaacttggtagataagtcgtcctaggtgatctcaaacccact
ttgggactcgatggccactactcaggcatgtgttgcagatacagttggat
gcacaagatattcatacacattaaagacaatataaaaaagctatctacct
tgtcactggatagcttcttccttttgagttccatcagcaataactcagga
tcctgacaaattctaaatgattaaacagacagaaatgtcttcttcctgtt
tgctgaaaccttttgagcacctgcagtagaaagacagggcatcaagtaga
gggatgggatttgcgaccccatagtcaaaaactctgatccagaattgttt
cctgtctaaaagaactgaagggacaaaaaaggaggagagcctaaagggaa
aggaggttcagtgaccggcccaaattgaaatcagttcaggggaagcccca
aacctgacactataactgatgctaatggtgtgcttaaaaacaggagccta
gcatgactgcccttctcaaaggccaaaaagcagataaagagtcagatgca
gaatacttgcaccttacaatgaacgaagccaaagaccatgtggtggaat
aatgtaaaaattcatcatttggctgaactgatagttcctgctgatgaaat
tctggattttaatatgttaaagcaaccttgatcagaagaagcatccatat
gaaaatagttgttttcacgaggatttaaaaaaaaaaaaaaaaaaacatgc
tcaagggagaaccgctaccctctcagagaagagacgcagatgggaggggg
gactgggggaaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12672948_12674047
seq2: B6Ng01-206P05.b_50_1148 (reverse)

seq1  ATTCCACCACATGGTTCCTTGGCTTCTGTCCATTGGTTAGGTGCAAGTA-  49
      |||||||||||||| || |||||||| || |||| || ||||||||||| 
seq2  ATTCCACCACATGG-TCTTTGGCTTC-GTTCATT-GTAAGGTGCAAGTAT  47

seq1  TCTGCATCTGACTCTTTTATCTGCTTTTTGGGCCTTTGAG-AGGGCAGTC  98
      |||||||||||||| |||||||||||||| |||||||||| |||||||||
seq2  TCTGCATCTGACTC-TTTATCTGCTTTTT-GGCCTTTGAGAAGGGCAGTC  95

seq1  ATGCTAGGCTCCTGTTTTTAAGCACACCA-TAGCATCAGTAATAGTGTCA  147
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  ATGCTAGGCTCCTGTTTTTAAGCACACCATTAGCATCAGTTATAGTGTCA  145

seq1  GGTTTGGGGCCTCCCCCTGAACTGGATTTCAATTTGGGCCGGTCACTGAA  197
      ||||||||| || |||||||||| ||||||||||||||||||||||||||
seq2  GGTTTGGGG-CTTCCCCTGAACT-GATTTCAATTTGGGCCGGTCACTGAA  193

seq1  CCTCCTTTCCC-TTAGGCTCTCCTCCTTTTTTGTCCCTTCAGTTCTTTTA  246
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTCCCTTTAGGCTCTCCTCCTTTTTTGTCCCTTCAGTTCTTTTA  243

seq1  GACAGG-AACAATTCTGGATCAGAGTTTTTGACTATGGGGTCGC-AATCC  294
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  GACAGGAAACAATTCTGGATCAGAGTTTTTGACTATGGGGTCGCAAATCC  293

seq1  CATCCCTCTACTTGATGCCCTGTCTTTCTACTGCAGGTGCTCAAAAGGTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCTACTTGATGCCCTGTCTTTCTACTGCAGGTGCTCAAAAGGTT  343

seq1  TCAGCAAACAGGAAGAAGACATTTCTGTCTGTTTAATCATTTAGAATTTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAACAGGAAGAAGACATTTCTGTCTGTTTAATCATTTAGAATTTG  393

seq1  TCAGGATCCTGAGTTATTGCTGATGGAACTCAAAAGGAAGAAGCTATCCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATCCTGAGTTATTGCTGATGGAACTCAAAAGGAAGAAGCTATCCA  443

seq1  GTGACAAGGTAGATAGCTTTTTTATATTGTCTTTAATGTGTATGAATATC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAGGTAGATAGCTTTTTTATATTGTCTTTAATGTGTATGAATATC  493

seq1  TTGTGCATCCAACTGTATCTGCAACACATGCCTGAGTAGTGGCCATCGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATCCAACTGTATCTGCAACACATGCCTGAGTAGTGGCCATCGAG  543

seq1  TCCCAAAGTGGGTTTGAGATCACCTAGGACGACTTATCTACCAAGTTGGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGTGGGTTTGAGATCACCTAGGACGACTTATCTACCAAGTTGGT  593

seq1  TCTGGGGACTCAACTGAGTGCTCCACAGAAACAGGAGTTGTTCTTGTCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGACTCAACTGAGTGCTCCACAGAAACAGGAGTTGTTCTTGTCTT  643

seq1  CTATCTCTTTAACCCCAGAGTAAATTTTTTTGGGAAAAATATTTTTTGTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTTTAACCCCAGAGTAAATTTTTTTGGGAAAAATATTTTTTGTG  693

seq1  GACAAAAATCACAAAGAAAAATACACATTTCTTCATGTTTTAGGAGCAGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAATCACAAAGAAAAATACACATTTCTTCATGTTTTAGGAGCAGC  743

seq1  CATGAGAAAATAGAATTATATTATTTTTCAAAACATGTATTAAAAATCAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAAAATAGAATTATATTATTTTTCAAAACATGTATTAAAAATCAA  793

seq1  TGTTAAATTCTGCCTGCATGAAATGAATGACATTACATCAAAGAGCAGCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATTCTGCCTGCATGAAATGAATGACATTACATCAAAGAGCAGCC  843

seq1  CTCTGATACTTCTACTGGAAACATTGCTACAATTATAGTCATTTTTAAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATACTTCTACTGGAAACATTGCTACAATTATAGTCATTTTTAAAT  893

seq1  GTTCTGAAGTTTTATCAAAAAAGGCAAATCCCAATGTGTAGTGATGCTTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAAGTTTTATCAAAAAAGGCAAATCCCAATGTGTAGTGATGCTTC  943

seq1  ACAGAAGCTGCTTCTTTGAAAAGCATTCCTATGTGCATTGGAATTCAATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCTGCTTCTTTGAAAAGCATTCCTATGTGCATTGGAATTCAATT  993

seq1  AAAGCAAAACTCACAGCAACCTCCTTCAGGATAGTTCATGCTAAAAGCAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAACTCACAGCAACCTCCTTCAGGATAGTTCATGCTAAAAGCAT  1043

seq1  TTCATGATTCTATACCCAATGTGTATAAATTATTCTATACACATACAGTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATTCTATACCCAATGTGTATAAATTATTCTATACACATACAGTG  1093

seq1  GAATTC  1100
      ||||||
seq2  GAATTC  1099

seq1: chr7_12572031_12572246
seq2: B6Ng01-206P05.g_75_290

seq1  AATGTAAAAATTCATCATTTGGCTGAACTGATAGTTCCTGCTGATGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAAATTCATCATTTGGCTGAACTGATAGTTCCTGCTGATGAAAT  50

seq1  TCTGGATTTTAATATGTTAAAGCAACCTTGATCAGAAGAAGCATCCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTTTAATATGTTAAAGCAACCTTGATCAGAAGAAGCATCCATAT  100

seq1  GAAAATAGTTGTTTTCACGAGGATTTAAAAAAAAAAAAAAAAAAACATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGTTGTTTTCACGAGGATTTAAAAAAAAAAAAAAAAAAACATGC  150

seq1  TCAAGGGAGAACCGCTACCCTCTCAGAGAAGAGACGCAGATGGGAGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGAGAACCGCTACCCTCTCAGAGAAGAGACGCAGATGGGAGGGGG  200

seq1  GACTGGGGGAAGGAGA  216
      ||||||||||||||||
seq2  GACTGGGGGAAGGAGA  216