BAC Information

Click to search

BAC

Clone NameB6Ng01-207C11
Chromosome11 (Build37)7 (Build37)
Map Location 82,156,335 - 82,156,467110,721,600 - 110,722,414
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAccn1, 1700071K01Rik, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1
Downstream geneTmem132e, Cct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207C11.bB6Ng01-207C11.g
ACCGA026383GA026384
length949823
definitionB6Ng01-207C11.b B6Ng01-207C11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,156,335 - 82,156,467)(110,721,600 - 110,722,414)
sequence
gaattctctatttagctttgtacttcattattcttttaaaatatatgtgt
ttaacaaagaattttattttaattattcgcaaaacaatattacaatattt
tatacaaatattaagtttctactttgtactcaaatttttaataaggctat
ttgtttctctggagtctgccttcttgaatgtttttttttttttaaattgg
atattagccctctattaaatgtagagttggtaaagatcttttcacaatct
gggtgttatcgttttgtactattgatagcgtcctttgccttacagaagtt
ttgcaaatttatgagatcccatttgttgactgttgatttagagcataaga
gatcggggttgctcaggaagtttagccctgtgcccatgtgttcgaggctc
ttcgccacttcctcttctttttttaaatttttttatgtttttatttttgt
tttttattttttcccttttttaaaatactttttattaggtatttttctca
tttacatttccaatgctatcccaaaagtcccccataccctcccacccact
cccctacccacccactcccacattttggccctggtgttcccctgtactgg
cgcatataaagtttgcaagtccaatgggcctctcttgccagtgatggccg
actaggccatcttttgatacatatgcagctagactcaagagctccgggta
ctggttagttcataatgttgttctacctatagggttgcagatccctttag
ctccttgggtactttctctagctcctccattgggggccctgtgatccatc
cattagctgactgtgagcatccacttatgtgtttgctaggcctcggccta
gtctcacagaagacagctatatttttgtactttcagcaaatcttgctatt
atatgcatggtgtcagcgtttggagctgattatgggatggatccatgga
gaattcatagtgctgtctgcagagggtgtccccgaagagtaagatagata
gttctgattcctaagaaaaggagggtgacaattttccagccactgctgtc
ccaggtatggtacttgtctaaacagtgactttagctgttttatggttgat
ggtggaatcaggtattgcacgtatgaaatgtgttagaaatattttaactg
atcacctgatataatagggtattcctgtttcagttctagaagtgctcact
gagaagtagattatatcttctaataggtaattaccatgttggaggtgtat
tcagaacaggaattgcttgttttcaaaagtaataagacagaatgaaatag
ggctttgtcagcccaatgtagtcaatcacaagttacgcttcctatatgtg
gagagtaatctatgatatggttttagattctatctcagaggcctcactgt
gttaagggcaatgggagtgtgcctcatcgttcaaaccagaaatgaaagaa
cacattaactaatgaagccttactggagtgaggacagctgattctcgggg
cagaagacactggtgcactggaggacctcatggtaagttttatttactgg
tttgtttagttctctggatgcttgatttggtgctacatggatttgcttta
actttgggtaaatttttgaacaaagcaggaaaaaggaaataggagatgtt
cagaagtcaagagcacgggagtgatgtggggtagggaaaagaggagaaaa
aatgacttttattatgtacaaaaaaataacttattttctaacaaacccat
tgagccaagtcccagtgacttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_82156335_82156467
seq2: B6Ng01-207C11.b_60_576

seq1  --------------------------------------------------  0
                                                        
seq2  TATTCTTTTAAAATATATGTGTTTAACAAAGAATTTTATTTTAATTATTC  50

seq1  --------------------------------------------------  0
                                                        
seq2  GCAAAACAATATTACAATATTTTATACAAATATTAAGTTTCTACTTTGTA  100

seq1  --------------------------------------------------  0
                                                        
seq2  CTCAAATTTTTAATAAGGCTATTTGTTTCTCTGGAGTCTGCCTTCTTGAA  150

seq1  --------------------------------------------------  0
                                                        
seq2  TGTTTTTTTTTTTTTAAATTGGATATTAGCCCTCTATTAAATGTAGAGTT  200

seq1  --------------------------------------------------  0
                                                        
seq2  GGTAAAGATCTTTTCACAATCTGGGTGTTATCGTTTTGTACTATTGATAG  250

seq1  --------------------------------------------------  0
                                                        
seq2  CGTCCTTTGCCTTACAGAAGTTTTGCAAATTTATGAGATCCCATTTGTTG  300

seq1  --------------------------------------------------  0
                                                        
seq2  ACTGTTGATTTAGAGCATAAGAGATCGGGGTTGCTCAGGAAGTTTAGCCC  350

seq1  ----------------------------------TATTC--TTTTAAAAT  14
                                        | |||  |||| ||||
seq2  TGTGCCCATGTGTTCGAGGCTCTTCGCCACTTCCTCTTCTTTTTTTAAAT  400

seq1  ATATTCAATAAACTCTTAAAATACATATTTTGTTCTTTTTTCCCTTTTT-  63
       | || |      | ||   ||   | |||| || |||||||||||||| 
seq2  TTTTTTA------TGTTTTTATTTTTGTTTT-TTATTTTTTCCCTTTTTT  443

seq1  ----TCTTTTTTATTAGGTATTTTCCTCATTTACATTTCCCATGCCATCC  109
          |  ||||||||||||||||| ||||||||||||||| |||| ||||
seq2  AAAATACTTTTTATTAGGTATTTTTCTCATTTACATTTCCAATGCTATCC  493

seq1  CAAAAGTCCCCCATACCCTCCCCC  133
      |||||||||||||||||||||| |
seq2  CAAAAGTCCCCCATACCCTCCCAC  517

seq1: chr7_110721600_110722414
seq2: B6Ng01-207C11.g_66_888

seq1  GAATTCATAGTGCTGTCTGCAGAGGGTGTCCCCGAAGAGTAAGATAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTGCTGTCTGCAGAGGGTGTCCCCGAAGAGTAAGATAGATA  50

seq1  GTTCTGATTCCTAAGAAAAGGAGGGTGACAATTTTCCAGCCACTGCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGATTCCTAAGAAAAGGAGGGTGACAATTTTCCAGCCACTGCTGTC  100

seq1  CCAGGTATGGTACTTGTCTAAACAGTGACTTTAGCTGTTTTATGGTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTATGGTACTTGTCTAAACAGTGACTTTAGCTGTTTTATGGTTGAT  150

seq1  GGTGGAATCAGGTATTGCACGTATGAAATGTGTTAGAAATATTTTAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAATCAGGTATTGCACGTATGAAATGTGTTAGAAATATTTTAACTG  200

seq1  ATCACCTGATATAATAGGGTATTCCTGTTTCAGTTCTAGAAGTGCTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTGATATAATAGGGTATTCCTGTTTCAGTTCTAGAAGTGCTCACT  250

seq1  GAGAAGTAGATTATATCTTCTAATAGGTAATTACCATGTTGGAGGTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTAGATTATATCTTCTAATAGGTAATTACCATGTTGGAGGTGTAT  300

seq1  TCAGAACAGGAATTGCTTGTTTTCAAAAGTAATAAGACAGAATGAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACAGGAATTGCTTGTTTTCAAAAGTAATAAGACAGAATGAAATAG  350

seq1  GGCTTTGTCAGCCCAATGTAGTCAATCACAAGTTACGCTTCCTATATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGTCAGCCCAATGTAGTCAATCACAAGTTACGCTTCCTATATGTG  400

seq1  GAGAGTAATCTATGATATGGTTTTAGATTCTATCTCAGAGGCCTCACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAATCTATGATATGGTTTTAGATTCTATCTCAGAGGCCTCACTGT  450

seq1  GTTAAGGGCAATGGGAGTGTGCCTCATCGTTCAAACCAGAAATGAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGGCAATGGGAGTGTGCCTCATCGTTCAAACCAGAAATGAAAGAA  500

seq1  CACATTAACTAATGAAGCCTTACTGGAGTGAGGACAGCTGATTCTCGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAACTAATGAAGCCTTACTGGAGTGAGGACAGCTGATTCTCGGGG  550

seq1  CAGAAGACACTGGTGCACTGGAGGACCTCATGGTAAGTTTTATTTACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACACTGGTGCACTGGAGGACCTCATGGTAAGTTTTATTTACTGG  600

seq1  TTTGTTTAGTTCTCTGGATGCTTGATTTGGTGCTACATGGATTTGCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAGTTCTCTGGATGCTTGATTTGGTGCTACATGGATTTGCTTTA  650

seq1  ACTTTGGGTAAATTTTTGAACAAAGCAGGAAAAAGGAAATAGGAGATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGGTAAATTTTTGAACAAAGCAGGAAAAAGGAAATAGGAGATGTT  700

seq1  CAGAAGTCAAGAGCACGGGAGTGATGT-GGGTAGG--AAAGAGGAG-AAA  746
      ||||||||||||||||||||||||||| |||||||  ||||||||| |||
seq2  CAGAAGTCAAGAGCACGGGAGTGATGTGGGGTAGGGAAAAGAGGAGAAAA  750

seq1  AATGAC-TTTATTATGTACAAAAAAATAACATA-ATTCTAACAAACCTA-  793
      |||||| ||||||||||||||||||||||| ||  |||||||||||| | 
seq2  AATGACTTTTATTATGTACAAAAAAATAACTTATTTTCTAACAAACCCAT  800

seq1  TGAGCCAAG-CCCAGTGACTTTA  815
      ||||||||| |||||||||||||
seq2  TGAGCCAAGTCCCAGTGACTTTA  823