BAC Information

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BAC

Clone NameB6Ng01-209F23
Chromosome7 (Build37)
Map Location 3,796,042 - 3,914,020
singlet/doubletdoublet
Overlap genePira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146
Downstream geneLOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209F23.bB6Ng01-209F23.g
ACCGA028006GA028007
length9411,126
definitionB6Ng01-209F23.b B6Ng01-209F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,796,042 - 3,796,980)(3,912,905 - 3,914,020)
sequence
gaattcagccttgtttgctggcttctgtttgttctttgttacggttttat
atagctttccatctttatagaggcggtactcattggctccaattgtctcc
tcacacaagaaggtcaccttagtcctcctggagaccacagagtctggctg
tactctgaggataggcttagggagggaccctgcaagtaacagagcaacta
ggacacaggacaaacacactcagattgcagtccttaaccccatggccttc
ctgccacccacaggactcacacacaggtggtgttttccaccattacagcc
caggcatggctcctggatatgaagaaaagagcatttcaggtcagctgcag
acacactcacctgtcagcactgggatccagaggctcagagtcagtcctgg
aagagagttctttgtaagagatttgtccccaaggctgagcaagtctgcag
aaacatctgagaccctgaggtttccttttgggtgagtgctggtctacagg
ccatgatcatttccagacctcagtattccctccccctcttcacatctcac
caagacagagcagggctgtgaaggtgcaggacatggcatctcccctcagt
ggctccaactgtgcttgagggcagagctacagagcctttctgaagggatt
gtgtacagggtgtggctctggaggcagggcagtccccatgacatggtcat
atatcagcagccccacagaaagaggaactgccctcctcaggaccatgctc
tgacttcctcaatggtgtgactaggccaggcagtcgaccctctgccatta
ggtcttacacagatgggcgattcctcatcccaccagtgtctgcctcacct
gtgcacattactgtcatggccatattgtagccaaacatgtgtgaacattt
cacacaacagtaaaaatgtaaatgtggttttctttgttcct
gaattcagggaggggaaactcaatataaaagatccaaaatattcctgact
ttctattggtggatccacttaatcccatggacatatatgaaaagaatacc
tgaaatatgtaattgggtttctaagaggcatctgttatgtctaaaaagag
aaatgtgcactttattgtgaccacagcagaagcggagttgggaaatcttt
gttttacttcctgaaaaaagttctgcattaaaaacaggaaaaatgagaga
cattcatgtgtagtatcgtctcaatatatgtaacctctgactctttttct
ctcatccaccaacacagtggtacagttggaaaaaaggattatgacaatta
ccacccagtctgactactccatgaagattcataatctgtcatgattttat
tcttgctttgaacttttagaagactccccaagattttactgtactatctc
ttctaattactcacataatactaagctatcttttaataataattttaaac
taatgtggagagctgtgccgtgagcaatcgccattataagatggcgctgg
cttccactgcgcctaactagtaaacaagccttatgcgcaattgcaagagt
gaactcacacctagtcactgcccatctcaggcatagtaatggggtgatgg
gcgagcaacgaatcaggagctgtcacgccacatcaggtgctgaaacgtca
cgctgtgggctatataagcagcgccattttcccagttcggggtcttccct
cctaagtaagcaataaaagtttgccgcagaagattccggttatcctgagt
gtgttcttgcccggcggggacaaaaagctctggataaacttacaattagc
aatggaaaaacccagccttgaaatatagcaactagcttcaagtctccata
aacaagagaaaaatattagtatcagcctgagttgcaaagtgtgtgagttt
tcttttctacagctgtaaagtctgaggttacaggctttgcacaagcaagg
cggatgctcagccactgagctttgtcccaatcttttgacttagtacaatt
tggtcggaactgttgaatagaatatataagcccatggagcagcctatacc
tgaagaatttcccaattatttggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3796042_3796980
seq2: B6Ng01-209F23.b_46_986

seq1  GAATTCAGCCTTGTTTGCTGGCTTCTGTTTGTTCTTTGTTACGGTTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTTGTTTGCTGGCTTCTGTTTGTTCTTTGTTACGGTTTTAT  50

seq1  ATAGCTTTCCATCTTTATAGAGGCGGTACTCATTGGCTCCAATTGTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTCCATCTTTATAGAGGCGGTACTCATTGGCTCCAATTGTCTCC  100

seq1  TCACACAAGAAGGTCACCTTAGTCCTCCTGGAGACCACAGAGTCTGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAAGAAGGTCACCTTAGTCCTCCTGGAGACCACAGAGTCTGGCTG  150

seq1  TACTCTGAGGATAGGCTTAGGGAGGGACCCTGCAAGTAACAGAGCAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGAGGATAGGCTTAGGGAGGGACCCTGCAAGTAACAGAGCAACTA  200

seq1  GGACACAGGACAAACACACTCAGATTGCAGTCCTTAACCCCATGGCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGGACAAACACACTCAGATTGCAGTCCTTAACCCCATGGCCTTC  250

seq1  CTGCCACCCACAGGACTCACACACAGGTGGTGTTTTCCACCATTACAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACCCACAGGACTCACACACAGGTGGTGTTTTCCACCATTACAGCC  300

seq1  CAGGCATGGCTCCTGGATATGAAGAAAAGAGCATTTCAGGTCAGCTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGGCTCCTGGATATGAAGAAAAGAGCATTTCAGGTCAGCTGCAG  350

seq1  ACACACTCACCTGTCAGCACTGGGATCCAGAGGCTCAGAGTCAGTCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCACCTGTCAGCACTGGGATCCAGAGGCTCAGAGTCAGTCCTGG  400

seq1  AAGAGAGTTCTTTGTAAGAGATTTGTCCCCAAGGCTGAGCAAGTCTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTTCTTTGTAAGAGATTTGTCCCCAAGGCTGAGCAAGTCTGCAG  450

seq1  AAACATCTGAGACCCTGAGGTTTCCTTTTGGGTGAGTGCTGGTCTACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTGAGACCCTGAGGTTTCCTTTTGGGTGAGTGCTGGTCTACAGG  500

seq1  CCATGATCATTTCCAGACCTCAGTATTCCCTCCCCCTCTTCACATCTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATCATTTCCAGACCTCAGTATTCCCTCCCCCTCTTCACATCTCAC  550

seq1  CAAGACAGAGCAGGGCTGTGAAGGTGCAGGACATGGCATCTCCCCTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGAGCAGGGCTGTGAAGGTGCAGGACATGGCATCTCCCCTCAGT  600

seq1  GGCTCCAACTGTGCTTGAGGGCAGAGCTACAGAGCCTTTCTGAAGGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAACTGTGCTTGAGGGCAGAGCTACAGAGCCTTTCTGAAGGGATT  650

seq1  GTGTACAGGGTGTGGCTCTGGAGGCAGGGCAGTCCCCATGACATGGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAGGGTGTGGCTCTGGAGGCAGGGCAGTCCCCATGACATGGTCAT  700

seq1  ATATCAGCAGCCCCACAGAAAGAGGAACTGCCCTCCTCAGGACCATGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGCAGCCCCACAGAAAGAGGAACTGCCCTCCTCAGGACCATGCTC  750

seq1  TGACTTCCTCAATGGTGTGACTAGGCCAGGCAGTCGACCCTCTGCCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCCTCAATGGTGTGACTAGGCCAGGCAGTCGACCCTCTGCCATTA  800

seq1  GGTCTTACACAGAT-GGCGTTTCCTCAGCCCACCAGTGTCTGCCTCACCT  849
      |||||||||||||| |||| ||||||| ||||||||||||||||||||||
seq2  GGTCTTACACAGATGGGCGATTCCTCATCCCACCAGTGTCTGCCTCACCT  850

seq1  GTGCACATTACTGTCATGGCCATATTGTAG-CAAACATGTGTGAACATTT  898
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTGCACATTACTGTCATGGCCATATTGTAGCCAAACATGTGTGAACATTT  900

seq1  CACACAACAGTAAAAATGTAAATGTGGTTTTCTTTGTTCCT  939
      |||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACAGTAAAAATGTAAATGTGGTTTTCTTTGTTCCT  941

seq1: chr7_3912905_3914020
seq2: B6Ng01-209F23.g_65_1190 (reverse)

seq1  AAACAAAATAAT--GGAAA-TCTTCAGGTACTAGGCTGCT-CATGG--CT  44
      |||| |||||||  ||||| |||||||||| ||||||||| |||||   |
seq2  AAACCAAATAATTGGGAAATTCTTCAGGTA-TAGGCTGCTCCATGGGCTT  49

seq1  ATATA-TCTA-TCAACAAGTTCCGAACAAATTGTACTTAGTC-AAAGATG  91
      ||||| |||| ||||| |||||||| ||||||||||| |||| |||||| 
seq2  ATATATTCTATTCAAC-AGTTCCGACCAAATTGTACTAAGTCAAAAGATT  98

seq1  GGGACAAAGCTCAGTGGCTGAGCATCCGCCTTGCTTGTGC-AAGCCTGTA  140
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGACAAAGCTCAGTGGCTGAGCATCCGCCTTGCTTGTGCAAAGCCTGTA  148

seq1  ACCTCAGACTTTACAGCTGTAGAAAAGAAAACTCACACACTTTGCAACTC  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGACTTTACAGCTGTAGAAAAGAAAACTCACACACTTTGCAACTC  198

seq1  AGGCTGATACTAATATTTTTCTCTTGTTTATGGAGACTTGAAGCTAGTTG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGATACTAATATTTTTCTCTTGTTTATGGAGACTTGAAGCTAGTTG  248

seq1  CTATATTTCAAGGCTGGGTTTTCCCATTGCTAATTGTAAGTTTATCCAGA  290
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTATATTTCAAGGCTGGGTTTTTCCATTGCTAATTGTAAGTTTATCCAGA  298

seq1  GC-TTTTGTCCCCGCC-GGCAAGAACACACTCAGGATAACCGGAATCTTC  338
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCTTTTTGTCCCCGCCGGGCAAGAACACACTCAGGATAACCGGAATCTTC  348

seq1  TGCGGCAAACTTTTATTGCTTACTTAGGAGGGAAGACCCCGAACTGGGAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCAAACTTTTATTGCTTACTTAGGAGGGAAGACCCCGAACTGGGAA  398

seq1  AATGGCGCTGCTTATATAGCCCACAGCGTGACGTTTCAGCACCTGATGTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCGCTGCTTATATAGCCCACAGCGTGACGTTTCAGCACCTGATGTG  448

seq1  GCGTGACAGCTCCTGATTCGTTGCTCGCCCATCACCCCATTACTATGCCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGACAGCTCCTGATTCGTTGCTCGCCCATCACCCCATTACTATGCCT  498

seq1  GAGATGGGCAGTGACTAGGTGTGAGTTCACTCTTGCAATTGCGCATAAGG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGGCAGTGACTAGGTGTGAGTTCACTCTTGCAATTGCGCATAAGG  548

seq1  CTTGTTTACTAGTTAGGCGCAGTGGAAGCCAGCGCCATCTTATAATGGCG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTACTAGTTAGGCGCAGTGGAAGCCAGCGCCATCTTATAATGGCG  598

seq1  ATTGCTCACGGCACAGCTCTCCACATTAGTTTAAAATTATTATTAAAAGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCACGGCACAGCTCTCCACATTAGTTTAAAATTATTATTAAAAGA  648

seq1  TAGCTTAGTATTATGTGAGTAATTAGAAGAGATAGTACAGTAAAATCTTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAGTATTATGTGAGTAATTAGAAGAGATAGTACAGTAAAATCTTG  698

seq1  GGGAGTCTTCTAAAAGTTCAAAGCAAGAATAAAATCATGACAGATTATGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCTTCTAAAAGTTCAAAGCAAGAATAAAATCATGACAGATTATGA  748

seq1  ATCTTCATGGAGTAGTCAGACTGGGTGGTAATTGTCATAATCCTTTTTTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATGGAGTAGTCAGACTGGGTGGTAATTGTCATAATCCTTTTTTC  798

seq1  CAACTGTACCACTGTGTTGGTGGATGAGAGAAAAAGAGTCAGAGGTTACA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTACCACTGTGTTGGTGGATGAGAGAAAAAGAGTCAGAGGTTACA  848

seq1  TATATTGAGACGATACTACACATGAATGTCTCTCATTTTTCCTGTTTTTA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGAGACGATACTACACATGAATGTCTCTCATTTTTCCTGTTTTTA  898

seq1  ATGCAGAACTTTTTTCAGGAAGTAAAACAAAGATTTCCCAACTCCGCTTC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAACTTTTTTCAGGAAGTAAAACAAAGATTTCCCAACTCCGCTTC  948

seq1  TGCTGTGGTCACAATAAAGTGCACATTTCTCTTTTTAGACATAACAGATG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGTCACAATAAAGTGCACATTTCTCTTTTTAGACATAACAGATG  998

seq1  CCTCTTAGAAACCCAATTACATATTTCAGGTATTCTTTTCATATATGTCC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAGAAACCCAATTACATATTTCAGGTATTCTTTTCATATATGTCC  1048

seq1  ATGGGATTAAGTGGATCCACCAATAGAAAGTCAGGAATATTTTGGATCTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATTAAGTGGATCCACCAATAGAAAGTCAGGAATATTTTGGATCTT  1098

seq1  TTATATTGAGTTTCCCCTCCCTGAATTC  1116
      ||||||||||||||||||||||||||||
seq2  TTATATTGAGTTTCCCCTCCCTGAATTC  1126