BAC Information

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BAC

Clone NameB6Ng01-209P03
Chromosome7 (Build37)
Map Location 77,922,472 - 78,060,389
singlet/doubletdoublet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209P03.bB6Ng01-209P03.g
ACCGA028419GA028420
length1,1721,083
definitionB6Ng01-209P03.b B6Ng01-209P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,922,472 - 77,923,650)(78,059,320 - 78,060,389)
sequence
gaattctactattttgaaatgtttgccatcaatttatgggcaaaagccag
ccctttctttttaaaacagtttaattttttgcataactgatgtaccagaa
attctgtttctaaagctacaggaaaatataggcaaataataaaaatataa
caaattggatttgtgacagctaattaataaagcaactgcatgaatcactg
gtgtatgtacaaacacatgcataatgtctattttatcttcttcagcagtg
agagactctatgaatccagcctccccggcctcctgctacacggagactgt
ctgacagcagcctcagacacccagttcttagtgtgaacactccgggaatg
ggcttgtgatgcaaatcaggcctctgaaagccaaggttctgatcagctcc
gttctgtctcctgcatatctgatgtccaagggcctccagccctggagaat
gctgctgtaggagatggtaattcacaggcatcttgcaaatttctaaccaa
ccaagagaaattcagagtgaaatacaagacaaaaccattcatttaagaaa
agtcatcactaagttgaaactgaaaggaatttccatttagcttttttctg
tttaaatttttaattaactaaaattttaatcccccggaggttctcaatta
atttagccttgattgccaaaacttttcaagcagtttgccttttagaaata
aaattaataaaaaatattaatgaaatgctttcaacaaaggaaattctaac
atttcaattataaaaaatagataaatctattggccttaatgtggtaccca
aataagacatggtcttttcgaggtttaaaaattctatgatgacaatgaaa
taacagccttttagacctttttgtcccaaatcacggctgtgactgtatat
gtagactatgccctttacactgtactccaaggtcctatgtaaaaacaaca
acaatatccaattgatcacatgggggtatcattttacgatatctctgtat
gtaagtggttttactgcggaactcttacactgtcactgtgtgcacatgcg
cagtagttagagttctatgtgatgcttcagatttccttccagaactgatg
tgacggcgatatctcacatggcccaggattcagaaggaccgtgatacaag
taactacgagaaaggcactctg

gaattccataacagcttgataggtgtttcagacctattccgatttgggaa
gcactgtgtctaatttgcagacacacattttaaaagggataggaaaaaat
tagagcaggcacagatggaaacaataaaaatgattaaagcacaggaaaat
gggaccttggaggaaagataaaagaacacgagattatttgttcttcagag
aaggaaatcaaaacttgaagaatcatttgagaatgtttgtcaagaatgcg
tagacttatcataggaacaaatgtttctgcttgtttatttctgttttgta
agagaaagtggatgggctcaactcggattaaggcagccatcagcaccctg
tgatggcatgcctctaggacagagcaacaagaaacaccaatctgggaagc
ttttgaaggctgggaaatgtgtgtgcgcttcccatgtctctaaacaggca
tttgttatggcacatgctggggaggagaagttccatttactctggccatt
gatatttatattctggaatgtctaagagtctcttctgagtagctctagct
gtcaatgaatttatcagcagtacagatgttacatgtcatcatggagaatt
cttgcaatggaggctggagatggctcagctggtggagtgtttgccacaca
agcattagggcccatgttcgattcccagctaggtgggatagcaagtccct
gcaatcctaggactggggaaggaagacaggtggatcatttggactctggc
cagccaatcttgatccatcactgaggtccaggttcagttaaaaaaacaag
caaactccttctcagaagagaaaatggagcccaggtatggtggagcatgc
ccttttaatcccagcattggtgaataaaggcaggtggatctaggtgacct
tcaccagtcatcaaagggctatattttgagactgttccaaggacaaatga
ggatgagcctcatggttgggcttcctacctcttgcttcccaccacaaatg
catgtttaatcatgctcaatacacacacgtgtcatccccatgaatagtac
caacatgttaaccaccatatgaccatgtgcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_77922472_77923650
seq2: B6Ng01-209P03.b_44_1215

seq1  GAATTCTACTATTTTGAAATGTTTGCCATCAATTTATGGGCAAAAGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTATTTTGAAATGTTTGCCATCAATTTATGGGCAAAAGCCAG  50

seq1  CCCTTTCTTTTTAAAACAGTTTAATTTTTTGCATAACTGATGTACCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTTTTTAAAACAGTTTAATTTTTTGCATAACTGATGTACCAGAA  100

seq1  ATTCTGTTTCTAAAGCTACAGGAAAATATAGGCAAATAATAAAAATATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTTCTAAAGCTACAGGAAAATATAGGCAAATAATAAAAATATAA  150

seq1  CAAATTGGATTTGTGACAGCTAATTAATAAAGCAACTGCATGAATCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGGATTTGTGACAGCTAATTAATAAAGCAACTGCATGAATCACTG  200

seq1  GTGTATGTACAAACACATGCATAATGTCTATTTTATCTTCTTCAGCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTACAAACACATGCATAATGTCTATTTTATCTTCTTCAGCAGTG  250

seq1  AGAGACTCTATGAATCCAGCCTCCCCGGCCTCCTGCTACACGGAGACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCTATGAATCCAGCCTCCCCGGCCTCCTGCTACACGGAGACTGT  300

seq1  CTGACAGCAGCCTCAGACACCCAGTTCTTAGTGTGAACACTCCGGGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCAGCCTCAGACACCCAGTTCTTAGTGTGAACACTCCGGGAATG  350

seq1  GGCTTGTGATGCAAATCAGGCCTCTGAAAGCCAAGGTTCTGATCAGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGATGCAAATCAGGCCTCTGAAAGCCAAGGTTCTGATCAGCTCC  400

seq1  GTTCTGTCTCCTGCATATCTGATGTCCAAGGGCCTCCAGCCCTGGAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCTCCTGCATATCTGATGTCCAAGGGCCTCCAGCCCTGGAGAAT  450

seq1  GCTGCTGTAGGAGATGGTAATTCACAGGCATCTTGCAAATTTCTAACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTAGGAGATGGTAATTCACAGGCATCTTGCAAATTTCTAACCAA  500

seq1  CCAAGAGAAATTCAGAGTGAAATACAAGACAAAACCATTCATTTAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGAAATTCAGAGTGAAATACAAGACAAAACCATTCATTTAAGAAA  550

seq1  AGTCATCACTAAGTTGAAACTGAAAGGAATTTCCATTTAGCTTTTTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCACTAAGTTGAAACTGAAAGGAATTTCCATTTAGCTTTTTTCTG  600

seq1  TTTAAATTTTTAATTAACTAAAATTTTAATCCCCCGGAGGTTCTCAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTTTAATTAACTAAAATTTTAATCCCCCGGAGGTTCTCAATTA  650

seq1  ATTTAGCCTTGATTGCCAAAACTTTTCAAGCAGTTTGCCTTTTAGAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCCTTGATTGCCAAAACTTTTCAAGCAGTTTGCCTTTTAGAAATA  700

seq1  AAATTAATAAAAAATATTAATGAAATGCTTTCAACAAAGGAAATTCTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATAAAAAATATTAATGAAATGCTTTCAACAAAGGAAATTCTAAC  750

seq1  ATTTCAATTATAAAAAATAGATAAATCTATTGGCCTTAATGTGGTACCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATTATAAAAAATAGATAAATCTATTGGCCTTAATGTGGTACCCA  800

seq1  AATAAGACATGGTCTTTTCGAGGTTTAAAAATTCTATGATGACAATGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACATGGTCTTTTCGAGGTTTAAAAATTCTATGATGACAATGAAA  850

seq1  TAACAGCCTTTTAGACCTTTTTGTCCCAAATCACGGCTGTGACTGTATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCCTTTTAGACCTTTTTGTCCCAAATCACGGCTGTGACTGTATAT  900

seq1  GTAGACTATGCCCTTTACACTGTACTCCAAGGTCCTATGTAAAAACAAAC  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTAGACTATGCCCTTTACACTGTACTCCAAGGTCCTATGTAAAAAC-AAC  949

seq1  AACAATATCCAATTGATCACATGGGGTAATCATTTTACGATAATCTCTGT  1000
      ||||||||||||||||||||||||||  ||||||||||||| ||||||||
seq2  AACAATATCCAATTGATCACATGGGGGTATCATTTTACGAT-ATCTCTGT  998

seq1  AATGTAAGTGGTTTTTACTGCGGAACTCCTTACACCTGTCACTGTGTGCA  1050
       |||||||||| ||||||||||||||| |||||| |||||||||||||||
seq2  -ATGTAAGTGG-TTTTACTGCGGAACT-CTTACA-CTGTCACTGTGTGCA  1044

seq1  CATGCGCAGTAGTTAGAG-TCTATGTGATGCTTTCCAGATTTC--TTCAG  1097
      |||||||||||||||||| ||||||||||||||  ||||||||  | |||
seq2  CATGCGCAGTAGTTAGAGTTCTATGTGATGCTT--CAGATTTCCTTCCAG  1092

seq1  ACTTGATGTGAC-GCG-TATCTCACATG--CCAGGATTCCCAAGGAAGGC  1143
      |  ||||||||| ||| |||||||||||  |||||||||  ||||     
seq2  AACTGATGTGACGGCGATATCTCACATGGCCCAGGATTCAGAAGG-----  1137

seq1  ACCGTGAATAAAAAGAAATAAGAGAAAGGCACTCTG  1179
      |||||| ||| ||  || || |||||||||||||||
seq2  ACCGTG-ATACAAGTAACTACGAGAAAGGCACTCTG  1172


seq1: chr7_78059320_78060389
seq2: B6Ng01-209P03.g_66_1148 (reverse)

seq1  TATGCACAT-GTCATAT-GTGGTTTACATGTGTGTAACTATTCATGGGGA  48
      ||||||||| ||||||| |||||| |||||| ||  ||||||||||||||
seq2  TATGCACATGGTCATATGGTGGTTAACATGT-TGGTACTATTCATGGGGA  49

seq1  TGACAC-TGTGTGTA-TGAGCATGATTAAACATGCATTTGT-GTGGG-AG  94
      |||||| |||||||| ||||||||||||||||||||||||| ||||| ||
seq2  TGACACGTGTGTGTATTGAGCATGATTAAACATGCATTTGTGGTGGGAAG  99

seq1  C-AGAGGTAAGAAG-CCAACCATGAGGCTCATCCTCAATTGTCCTTGGAA  142
      | ||||||| |||| |||||||||||||||||||||| ||||||||||||
seq2  CAAGAGGTAGGAAGCCCAACCATGAGGCTCATCCTCATTTGTCCTTGGAA  149

seq1  CAGTCTCAAAATATAGCCC-TTGATGACT-GTG-AGGTCACCTAGATCCA  189
      ||||||||||||||||||| ||||||||| ||| ||||||||||||||||
seq2  CAGTCTCAAAATATAGCCCTTTGATGACTGGTGAAGGTCACCTAGATCCA  199

seq1  CCTGCCTTTATTCACCAATGCTGGGATTAAA--GGCATGCTCCACCATAC  237
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  CCTGCCTTTATTCACCAATGCTGGGATTAAAAGGGCATGCTCCACCATAC  249

seq1  CT-GGCTCCATTTTCTCTTCTGAGAAGGAGTTTGCTTGTTTTTTTAACTG  286
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCCATTTTCTCTTCTGAGAAGGAGTTTGCTTGTTTTTTTAACTG  299

seq1  AACCTGGACCTCAGTGATGGATCAAGATTGGCTGGCCAGAGTCCAAATGA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGACCTCAGTGATGGATCAAGATTGGCTGGCCAGAGTCCAAATGA  349

seq1  TCCACCTGTCTTCCTTCCCCAGTCCTAGGATTGCAGGGACTTGCTATCCC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGTCTTCCTTCCCCAGTCCTAGGATTGCAGGGACTTGCTATCCC  399

seq1  ACCTAGCTGGGAATCGAACATGGGCCCTAATGCTTGTGTGGCAAACACTC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCTGGGAATCGAACATGGGCCCTAATGCTTGTGTGGCAAACACTC  449

seq1  CACCAGCTGAGCCATCTCCAGCCTCCATTGCAAGAATTCTCCATGATGAC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTGAGCCATCTCCAGCCTCCATTGCAAGAATTCTCCATGATGAC  499

seq1  ATGTAACATCTGTACTGCTGATAAATTCATTGACAGCTAGAGCTACTCAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACATCTGTACTGCTGATAAATTCATTGACAGCTAGAGCTACTCAG  549

seq1  AAGAGACTCTTAGACATTCCAGAATATAAATATCAATGGCCAGAGTAAAT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTCTTAGACATTCCAGAATATAAATATCAATGGCCAGAGTAAAT  599

seq1  GGAACTTCTCCTCCCCAGCATGTGCCATAACAAATGCCTGTTTAGAGACA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTCTCCTCCCCAGCATGTGCCATAACAAATGCCTGTTTAGAGACA  649

seq1  TGGGAAGCGCACACACATTTCCCAGCCTTCAAAAGCTTCCCAGATTGGTG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGCGCACACACATTTCCCAGCCTTCAAAAGCTTCCCAGATTGGTG  699

seq1  TTTCTTGTTGCTCTGTCCTAGAGGCATGCCATCACAGGGTGCTGATGGCT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTGCTCTGTCCTAGAGGCATGCCATCACAGGGTGCTGATGGCT  749

seq1  GCCTTAATCCGAGTTGAGCCCATCCACTTTCTCTTACAAAACAGAAATAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAATCCGAGTTGAGCCCATCCACTTTCTCTTACAAAACAGAAATAA  799

seq1  ACAAGCAGAAACATTTGTTCCTATGATAAGTCTACGCATTCTTGACAAAC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGAAACATTTGTTCCTATGATAAGTCTACGCATTCTTGACAAAC  849

seq1  ATTCTCAAATGATTCTTCAAGTTTTGATTTCCTTCTCTGAAGAACAAATA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAATGATTCTTCAAGTTTTGATTTCCTTCTCTGAAGAACAAATA  899

seq1  ATCTCGTGTTCTTTTATCTTTCCTCCAAGGTCCCATTTTCCTGTGCTTTA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGTGTTCTTTTATCTTTCCTCCAAGGTCCCATTTTCCTGTGCTTTA  949

seq1  ATCATTTTTATTGTTTCCATCTGTGCCTGCTCTAATTTTTTCCTATCCCT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTATTGTTTCCATCTGTGCCTGCTCTAATTTTTTCCTATCCCT  999

seq1  TTTAAAATGTGTGTCTGCAAATTAGACACAGTGCTTCCCAAATCGGAATA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGTGTGTCTGCAAATTAGACACAGTGCTTCCCAAATCGGAATA  1049

seq1  GGTCTGAAACACCTATCAAGCTGTTATGGAATTC  1070
      ||||||||||||||||||||||||||||||||||
seq2  GGTCTGAAACACCTATCAAGCTGTTATGGAATTC  1083


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