BAC Information

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BAC

Clone NameB6Ng01-209P11
Chromosome7 (Build37)
Map Location 12,527,751 - 12,528,489
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4
Downstream geneLOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209P11.bB6Ng01-209P11.g
ACCGA028435GA028436
length983819
definitionB6Ng01-209P11.b B6Ng01-209P11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtaggcaaggcccaggagaaaatcattttaggaaaaaaatcc
tgcaattaatatacttttcctgctattattaaacataaataataattgct
gggtagaagccaacccttttgagcggatctctgctaatctatgaagatgc
actgttttgtagtaatgctatatagacaaatagatgatttcttaattgtt
aatgatgatcctatgagaattcctaaaattatatcagtatttattaagct
cttttgtagtgaaactgataataggtccttttcagatagtcaaaactgca
atgagagctctgttaagtctcccatgtgtcaccagttaattgctcttaga
tagtaaccagactttctcctactcagagcacattccaagaggttgtaaac
caattaaccaaaggtcataaacagagaactaatgattcattataggtgct
agaacagaagataaaatattgactaggtttatcttacaaactaattttct
gtgaacttgtggagctgtgacaggtgacaaatgtttagccaggtaattaa
ttactcttaatggatatgcatgtaaacattctctcttgtaaacttatatt
tcaatttatgatttgatttttgtgtgtgtgtgaacttgtaatgaactttt
taacatgtgatcaagtattctaaaagatatataagtactgaaaagagatg
agaaaagagatgagaaaagagagaagaaatttttccctttccttaattag
agaagaatttttccctttccctgcttaggatctttcttctttttcactta
gatagcgttcatagaaaacgttttacaaacttagtaataaatgctataat
cactttttcaaagtgtccctttttcttactttaacgtctgactagcattc
caaaagttagaatggttgcagttttgtggccagctgcagtcgcacgaacc
gggtacttcctgaaaacaccagggaggggctta
gaattcctgatctttccaagatgtttaccatgaaggggtgttgaatattg
ttaaatgctttctcagcatctaatgagatgatcacatgtttttttttttt
tcctttgagtttttctatatagtggaccgggttgatggatttccgtatac
tgaacgatccctgcattcctgggataaagcctgcttgatcatgatggatg
attgctttgatgtgttcttggattctgtttttgagaattttattaagtat
ttttgcattaatatttataagaggaattgttctgcttttgcctttctttg
ttgggtctttgtgtggtttagggattagtgtaattgtgtcttcatagaac
aaattgggtagtgttccttctttttctattttgtggaatagtttgaagag
aattgatattaggtcttctttgaaggtctgatagaattctgcacgaaacc
catctggtcctggggcttttttggttggaagacttttaatgagtgatgct
atttctttaggggttatgtgactgtttagattgtttatcttatcctgatt
taactttggtacctggtaactgcttagaaaatttgttcatctcatccaga
ttttccagttttgttaagtttaggctgtgtcataggatctgatttttttt
tttaaatttcctcagtttttgatgttattactccctttttcagttctgat
tttaattaatttgaatactgtctgtgtgccctgcggttagtctagctaag
ggtttatcttttcttgttgatttttctcaaggaaccagctcctggctttg
ttatttctttggtttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12527751_12528489
seq2: B6Ng01-209P11.b_282_1027

seq1  TATTTATTAAGCTCTTTTGTAGTGAAACTGATAATAGGTCCTTTTCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTAAGCTCTTTTGTAGTGAAACTGATAATAGGTCCTTTTCAGAT  50

seq1  AGTCAAAACTGCAATGAGAGCTCTGTTAAGTCTCCCATGTGTCACCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAACTGCAATGAGAGCTCTGTTAAGTCTCCCATGTGTCACCAGTT  100

seq1  AATTGCTCTTAGATAGTAACCAGACTTTCTCCTACTCAGAGCACATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTCTTAGATAGTAACCAGACTTTCTCCTACTCAGAGCACATTCCA  150

seq1  AGAGGTTGTAAACCAATTAACCAAAGGTCATAAACAGAGAACTAATGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTGTAAACCAATTAACCAAAGGTCATAAACAGAGAACTAATGATT  200

seq1  CATTATAGGTGCTAGAACAGAAGATAAAATATTGACTAGGTTTATCTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAGGTGCTAGAACAGAAGATAAAATATTGACTAGGTTTATCTTAC  250

seq1  AAACTAATTTTCTGTGAACTTGTGGAGCTGTGACAGGTGACAAATGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATTTTCTGTGAACTTGTGGAGCTGTGACAGGTGACAAATGTTTA  300

seq1  GCCAGGTAATTAATTACTCTTAATGGATATGCATGTAAACATTCTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTAATTAATTACTCTTAATGGATATGCATGTAAACATTCTCTCTT  350

seq1  GTAAACTTATATTTCAATTTATGATTTGATTTTTGTGTGTGTGTGAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTTATATTTCAATTTATGATTTGATTTTTGTGTGTGTGTGAACTT  400

seq1  GTAATGAACTTTTTAACATGTGATCAAGTATTCTAAAAGATATATAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAACTTTTTAACATGTGATCAAGTATTCTAAAAGATATATAAGTA  450

seq1  CTGAAAAGAGATGAGAAAAGAGATGAGAAAAGAGAGAAGAAATTTTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGAGATGAGAAAAGAGATGAGAAAAGAGAGAAGAAATTTTTCCC  500

seq1  TTTCCTTAATTAGAGAAGAATTTTTCCCTTTCCCTGCTTAGGATCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAATTAGAGAAGAATTTTTCCCTTTCCCTGCTTAGGATCTTTCT  550

seq1  TCTTTTTCACTTAGATAGCGTTCATAGAAAACGTTTTAC-AACTTAGTAA  599
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTTTTTCACTTAGATAGCGTTCATAGAAAACGTTTTACAAACTTAGTAA  600

seq1  TAAATGCTATAATCAC-TTTTCAAAGTGTCCCTTTTTCTTACTTTAACGT  648
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAATGCTATAATCACTTTTTCAAAGTGTCCCTTTTTCTTACTTTAACGT  650

seq1  CTGACTAGCATTCCAAAAGTTAGAATGG-TGCAGTTTTGTGGCCAGCTGC  697
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGACTAGCATTCCAAAAGTTAGAATGGTTGCAGTTTTGTGGCCAGCTGC  700

seq1  AGTCGCACGAACCGGGTAC-TCCTG-AAACAC--AGGAGGGGCTGA  739
      ||||||||||||||||||| ||||| ||||||   ||||||||| |
seq2  AGTCGCACGAACCGGGTACTTCCTGAAAACACCAGGGAGGGGCTTA  746