BAC Information

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BAC

Clone NameB6Ng01-212E09
Chromosome7 (Build37)
Map Location 56,995,191 - 57,125,636
singlet/doubletdoublet
Overlap geneHtatip2, Prmt3
Upstream geneZdhhc13, Csrp3, E2f8, LOC100040465, 9130015G15Rik, 5330421F07Rik, Dbx1
Downstream geneSlc6a5, Nell1, 4933405O20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212E09.bB6Ng01-212E09.g
ACCGA030111GA030112
length1,026979
definitionB6Ng01-212E09.b B6Ng01-212E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,124,585 - 57,125,636)(56,995,191 - 56,996,168)
sequence
gaattcccgatgatgtggtctttatcaccctcctcggcatttttcctgat
ttgaaacattggtcaccttctgaacgtttcacatttactattctctaggc
accaacctgccattgtcctatcgagtgttccttgagtgtatctgtcctgc
tgaccccttaatgctctcaagggagggctgatttaagattacagtctccc
ctcaacttccccatccaaaacacaggtttcagttcttaatgcatttgatt
tttaaagtgatctcatgtgcactaaatgccagcagtcactgactgatgac
accaggtactgaagggactctcaaggcagtgaagcaggtctctatttgat
tttgtggcaggacaaagccgggttagaaatatctagcagctggaacactg
tgactcagctaccagagctgatccagcacgtgacctctgtgtctggctga
ctctgcagtctatctcttgtgctatgatgctctccgcttgaccttcatcc
accgtccctcctgtatgagttcagatgctatcaccccaaaatttggtgct
tcctgtcagccccacatgtctccgctcaaagctatgcaatgggaacagat
gtgcacactggcaagaagatgccttttgaagtcggccatgtcacagtaaa
tcgtgccctctgaatctcaaggatttccttcccttcaaaatgagccagtt
aaaataatgatatcatatgtttgccaggaggacccagagctagtgcacag
ctccctcagcaagcactcatccctgccccatcgctgccaacctcttccac
actggtccacactctggctgctgtcctctgggctcctctagtcctagctg
aacagcctcttttttcaacggcctacctctgccttttaggtccctgggaa
tggaaatacatgctcttgaaccgaactaacaagactagactacacgccca
aagttccctggcttcattgctaatagaccacagagttaccgccatgactg
aatgccactgcggtgtgtaattctac
gaattctgaccacagggaaagctgtggagcgcaagccttgacttttgaca
caatgactctgcgtttgatttcccattaacttgcaaggtatattgctctt
acctgttttggtctcacaactgaacctggagctgacaaggttaccctctt
accaaggctacacaacggaagaaacaagtagccagctgagtagtggtaac
acccacggccgggtgtctagggaaagcagagcaggtctagaaaagagttt
ccaggtctgagagtgcgcatggtaagcactgtcacatgccagcccctgac
aacggccaaggctggaggatgaagctcctgagccatcctggtcctcacag
tctcattactgatgagcaaggtcctctgtgattcctgggaaggcccagtg
gacaatgatgtttgcaattcctgtcactggtatttgagattcagatttct
gtctagtgagaaaattcatggaatcccagaaagtctcatttataaaatca
ttacaaatctaagagagaattttcacctcagattcccttttctaaggcgt
aaaatacaaagtaaattacggtaccactgcccttggtaaaatggagtgtc
atcctgaagtcaccctttcagctaccccaactttacccacagcctcttga
tcccctaagcagcccggctgaggcccctgtgcagcttgtctgtcatctcc
tttgacagcagggctcagatgagccggccattgcttctgagtgaggagga
gggagttggagagtggcccctgtgatgaatttgagctctagttagtgatt
cctatctgaaatttctctttctatcacattgcttgataatctgaacaatg
acaaggtggagagatgcagagagagagagagagagagagcacaaaagaat
gaaagagtagaagttgaaggaaaggatggggagaaagggaagggaagaag
agaagaaagaaagggagcagggacgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_57124585_57125636
seq2: B6Ng01-212E09.b_42_1067 (reverse)

seq1  GTAGAATTACACATAGCAGCATGGGCATTCAGTCATATGGCGGGGTAAAC  50
      |||||||||||||   | |||  |||||||||||  |||||||    |||
seq2  GTAGAATTACACA---CCGCAGTGGCATTCAGTC--ATGGCGG---TAAC  42

seq1  TGCTGTGGGTGCTTATGCAAAATGAGAGCCAGGGAAACTTTTGTGCTGTA  100
      | ||||||    ||| ||  ||||| |||||||| |||||| |   ||||
seq2  T-CTGTGGTCTATTA-GC--AATGA-AGCCAGGG-AACTTTGGGCGTGTA  86

seq1  GTCTTAGGTCTTGTTTTGTTTCGGTTTTCAAAGAGCATGTATCT-CATTC  149
      ||||   ||||||  ||  |||||||    |||||||||||| | |||||
seq2  GTCT--AGTCTTG--TTAGTTCGGTT---CAAGAGCATGTATTTCCATTC  129

seq1  ACAGGGACTAAAAAAGCAGA-GTAGCCTGTCTGGAATAAAGA-GCTGTTC  197
       |||||||  |||| ||||| |||| | |  | ||| ||||| |||||||
seq2  CCAGGGACCTAAAAGGCAGAGGTAGGCCG--TTGAAAAAAGAGGCTGTTC  177

seq1  AGCTAGAGACTAGAGGAGCCCAGAGGACAGGCAGCCAGAGTGTGGGACCA  247
      |||||| |||||||||||||||||||||| ||||||||||||| ||||||
seq2  AGCTAG-GACTAGAGGAGCCCAGAGGACA-GCAGCCAGAGTGT-GGACCA  224

seq1  GTGTGGAAAGAGGTTGGCAGCGATGGGGGCAGGGATGAGTGCTTGCTGAG  297
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGTGG-AAGAGGTTGGCAGCGAT-GGGGCAGGGATGAGTGCTTGCTGAG  272

seq1  GGAGCTGTGCACTAGCTCTGGGTCCTCCTGGCAAACATATGATATCATTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGTGCACTAGCTCTGGGTCCTCCTGGCAAACATATGATATCATTA  322

seq1  TTTTAACTGGCCTCATTTTGAAGGGAAGGAAATCCTTGAGATTCAGAGGG  397
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTGG-CTCATTTTGAAGGGAAGGAAATCCTTGAGATTCAGAGGG  371

seq1  CACGATTTACTGTGACATGGCCGACTTCAAAAGGCATCTTCTTGCCAGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATTTACTGTGACATGGCCGACTTCAAAAGGCATCTTCTTGCCAGTG  421

seq1  TGCACATCTGTTCCCATTGCATAGCTTTGAGCGGAGACATGTGGGGCTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATCTGTTCCCATTGCATAGCTTTGAGCGGAGACATGTGGGGCTGA  471

seq1  CAGGAAGCACCAAATTTTGGGGTGATAGCATCTGAACTCATACAGGAGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCACCAAATTTTGGGGTGATAGCATCTGAACTCATACAGGAGGG  521

seq1  ACGGTGGATGAAGGTCAAGCGGAGAGCATCATAGCACAAGAGATAGACTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGGATGAAGGTCAAGCGGAGAGCATCATAGCACAAGAGATAGACTG  571

seq1  CAGAGTCAGCCAGACACAGAGGTCACGTGCTGGATCAGCTCTGGTAGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCAGCCAGACACAGAGGTCACGTGCTGGATCAGCTCTGGTAGCTG  621

seq1  AGTCACAGTGTTCCAGCTGCTAGATATTTCTAACCCGGCTTTGTCCTGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGTGTTCCAGCTGCTAGATATTTCTAACCCGGCTTTGTCCTGCC  671

seq1  ACAAAATCAAATAGAGACCTGCTTCACTGCCTTGAGAGTCCCTTCAGTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCAAATAGAGACCTGCTTCACTGCCTTGAGAGTCCCTTCAGTAC  721

seq1  CTGGTGTCATCAGTCAGTGACTGCTGGCATTTAGTGCACATGAGATCACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTCATCAGTCAGTGACTGCTGGCATTTAGTGCACATGAGATCACT  771

seq1  TTAAAAATCAAATGCATTAAGAACTGAAACCTGTGTTTTGGATGGGGAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATCAAATGCATTAAGAACTGAAACCTGTGTTTTGGATGGGGAAG  821

seq1  TTGAGGGGAGACTGTAATCTTAAATCAGCCCTCCCTTGAGAGCATTAAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGGAGACTGTAATCTTAAATCAGCCCTCCCTTGAGAGCATTAAGG  871

seq1  GGTCAGCAGGACAGATACACTCAAGGAACACTCGATAGGACAATGGCAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCAGGACAGATACACTCAAGGAACACTCGATAGGACAATGGCAGG  921

seq1  TTGGTGCCTAGAGAATAGTAAATGTGAAACGTTCAGAAGGTGACCAATGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCCTAGAGAATAGTAAATGTGAAACGTTCAGAAGGTGACCAATGT  971

seq1  TTCAAATCAGGAAAAATGCCGAGGAGGGTGATAAAGACCACATCATCGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCAGGAAAAATGCCGAGGAGGGTGATAAAGACCACATCATCGGG  1021

seq1  AATTC  1052
      |||||
seq2  AATTC  1026

seq1: chr7_56995191_56996168
seq2: B6Ng01-212E09.g_64_1042

seq1  GAATTCTGACCACAGGGAAAGCTGTGGAGCGCAAGCCTTGACTTTTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACCACAGGGAAAGCTGTGGAGCGCAAGCCTTGACTTTTGACA  50

seq1  CAATGACTCTGCGTTTGATTTCCCATTAACTTGCAAGGTATATTGCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTCTGCGTTTGATTTCCCATTAACTTGCAAGGTATATTGCTCTT  100

seq1  ACCTGTTTTGGTCTCACAACTGAACCTGGAGCTGACAAGGTTACCCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTTGGTCTCACAACTGAACCTGGAGCTGACAAGGTTACCCTCTT  150

seq1  ACCAAGGCTACACAACGGAAGAAACAAGTAGCCAGCTGAGTAGTGGTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGCTACACAACGGAAGAAACAAGTAGCCAGCTGAGTAGTGGTAAC  200

seq1  ACCCACGGCCGGGTGTCTAGGGAAAGCAGAGCAGGTCTAGAAAAGAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACGGCCGGGTGTCTAGGGAAAGCAGAGCAGGTCTAGAAAAGAGTTT  250

seq1  CCAGGTCTGAGAGTGCGCATGGTAAGCACTGTCACATGCCAGCCCCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCTGAGAGTGCGCATGGTAAGCACTGTCACATGCCAGCCCCTGAC  300

seq1  AACGGCCAAGGCTGGAGGATGAAGCTCCTGAGCCATCCTGGTCCTCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCCAAGGCTGGAGGATGAAGCTCCTGAGCCATCCTGGTCCTCACAG  350

seq1  TCTCATTACTGATGAGCAAGGTCCTCTGTGATTCCTGGGAAGGCCCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTACTGATGAGCAAGGTCCTCTGTGATTCCTGGGAAGGCCCAGTG  400

seq1  GACAATGATGTTTGCAATTCCTGTCACTGGTATTTGAGATTCAGATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGATGTTTGCAATTCCTGTCACTGGTATTTGAGATTCAGATTTCT  450

seq1  GTCTAGTGAGAAAATTCATGGAATCCCAGAAAGTCTCATTTATAAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTGAGAAAATTCATGGAATCCCAGAAAGTCTCATTTATAAAATCA  500

seq1  TTACAAATCTAAGAGAGAATTTTCACCTCAGATTCCCTTTTCTAAGGCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATCTAAGAGAGAATTTTCACCTCAGATTCCCTTTTCTAAGGCGT  550

seq1  AAAATACAAAGTAAATTACGGTACCACTGCCCTTGGTAAAATGGAGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAAAGTAAATTACGGTACCACTGCCCTTGGTAAAATGGAGTGTC  600

seq1  ATCCTGAAGTCACCCTTTCAGCTACCCCAACTTTACCCACAGCCTCTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAAGTCACCCTTTCAGCTACCCCAACTTTACCCACAGCCTCTTGA  650

seq1  TCCCCTAAGCAGCCCGGCTGAGGCCCCTGTGCAGCTTGTCTGTCATCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAAGCAGCCCGGCTGAGGCCCCTGTGCAGCTTGTCTGTCATCTCC  700

seq1  TTTGACAGCAGGGCTCAGATGAGCCGGCCATTGCTTCTGAGTGAGGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGCAGGGCTCAGATGAGCCGGCCATTGCTTCTGAGTGAGGAGGA  750

seq1  GGGAGTTGGAGAGTGGCCCCTGTGATGAATTTGAGCTCTAGTTAGTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGGAGAGTGGCCCCTGTGATGAATTTGAGCTCTAGTTAGTGATT  800

seq1  CCTATCTGAAATTTCTCTTTCTATCACATTGCTTGATAATCTGAACAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTGAAATTTCTCTTTCTATCACATTGCTTGATAATCTGAACAATG  850

seq1  ACAAGGTGGAGAGATGCAGAGAGAGAGAGAGAGAGAGAGCACAAAAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTGGAGAGATGCAGAGAGAGAGAGAGAGAGAGAGCACAAAAGAAT  900

seq1  GAAAGAGTAGAAGTGGAAGGAAAGGATGGGGAGAAA-GGAAGGGAAGAAG  949
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  GAAAGAGTAGAAGTTGAAGGAAAGGATGGGGAGAAAGGGAAGGGAAGAAG  950

seq1  AGAAGAAAGAAAGGGAGCAGGGACGGGGA  978
      |||||||||||||||||||||||||||||
seq2  AGAAGAAAGAAAGGGAGCAGGGACGGGGA  979