BAC Information

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BAC

Clone NameB6Ng01-213C24
Chromosome7 (Build37)
Map Location 4,191,366 - 4,318,474
singlet/doubletdoublet
Overlap geneEG232801, Ncr1
Upstream geneNlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521
Downstream geneGp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213C24.bB6Ng01-213C24.g
ACCGA030792GA030793
length1,1761,014
definitionB6Ng01-213C24.b B6Ng01-213C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,191,366 - 4,192,551)(4,317,475 - 4,318,474)
sequence
gaattctctaggagtgctgctgtgacctcccttcttggggacacttaaag
gtgtagctgttgaaacttataaccctatttgttgtcatatcccagacccc
tgtggaagtcaaggtcttagataaggggacccgtacctgtaatgtctgtg
ctcattcattgccctgcccgcaggagaactagtgcctctaattataaggt
ttggtgaaatcaagtaaaatttcattataaagtgactctgatacaagttt
tgagcacaaagatcagagtgggtctgaagcatccatcaaggagaccagta
ggaaactcctacaaaaagaagagttcatcccgatctgcatgaagctatgt
gatgagagtgatgtatatttatagaaaggaacatacaaaatagggccaga
gttgtagctcagttggtagaatcattgtctagcaagcaggaggccctgtc
actaaatacactgggaactgtgactgtgacttgtaactgcagcactggga
aggtggaggcacaaggaggaggatcagaaatgcaaagtaatcctaggtga
catagtgagttgaaggctagtctgggctatgtaagacactatcccaaaag
aaagaaggaggaaagaagacagacaggaagagaggaaggaaatcagaaga
tgaatgatagacaaaaagacagaaagagaggaatgaggaagaaacagata
gagggagtgagagagaaacagagtaagaaattaaattaagaaatttgaac
ttgccaggcatggtagtacacacctttaatcccaggactcaagagagaga
ggcagagagaactctgagttcaaggacagcctcatttacctcgcaagttt
caggacagccaaggctataaattttttttttttttgtctcaaacaaacaa
acccaaaaactaagaagcttggactgtttttataaaacattttcctgtga
aaatttacagtaaagtcagcataaataaccaaatttcccattcttttctt
tttaaatttttacatttattttaaatttaaaaataatttcacaataatac
tgcattgcattattattacaccttcctctcaagctctctatgattattta
tgctctctcaagtccatgacgtttcatattgtaatgcatgccattatata
tagcctgctgcatatacatgcgacag
gaattcagcgagtgcccagaagtctgggtcaggactctggataagaggtc
cctgtcatcttctagaattgtggttgagtttgacacaggaaagcacccac
tgatattcactatgacctgctcttcagggacagctgaggattggaaaata
tggcttggctgataggaatctatcaatgatgtttggaggagccaatgaat
gaagtcagtgttctggagaattgtataggaacagacacccataacctttg
gttattttcttcaggaacccccttacctactcagtttcaataagcccctg
ggtgcctccctgacatgcaaacatgaatatgctactgagttgctgaagat
attggtgaattgtggaaggatggtcttcctgtacgccgtaccaaagtact
cacagtgagaacttccttcttggttaacaatgtgaacagatccaaaacat
gtatacatacattttctgcagtagggtaaagactgtgttcttagaagcca
gtagtgggaagaggctggtgatccagataaatcagtgtcatgagaacaag
cattgctttgcttgttcacctctgcacacgtgtaccattcctgtaaatag
cagcgagtcctctagccatctctcatctttgagtgtggtttgcagacaga
agatgggtatgagagtatgggacagaggaaatatacctcaagaaaaatga
attaaccaataagatgaattaagacctcggttgaggggctggatagatat
cttagcagttaagtttctgctccttttaaagagaacctaagtttgatttc
atagcacccaattctagtggctcacaatgccctgtaccttccagcttttg
agggatcctttattcaggtgtactttggacacatgtagacaaatacacaa
acattaaaaagactcttggtcaaaaagcttatgtcttggagaggttatag
cccctagtgtggtaaatctgctactgtttgcttaaattgttcatgcgggt
caaactgcttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4191366_4192551
seq2: B6Ng01-213C24.b_49_1224

seq1  GAATTCTCTAGGAGTGCTGCTGTGACCTCCCTTCTTGGGGACACTTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGGAGTGCTGCTGTGACCTCCCTTCTTGGGGACACTTAAAG  50

seq1  GTGTAGCTGTTGAAACTTATAACCCTATTTGTTGTCATATCCCAGACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTGTTGAAACTTATAACCCTATTTGTTGTCATATCCCAGACCCC  100

seq1  TGTGGAAGTCAAGGTCTTAGATAAGGGGACCCGTACCTGTAATGTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGTCAAGGTCTTAGATAAGGGGACCCGTACCTGTAATGTCTGTG  150

seq1  CTCATTCATTGCCCTGCCCGCAGGAGAACTAGTGCCTCTAATTATAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCATTGCCCTGCCCGCAGGAGAACTAGTGCCTCTAATTATAAGGT  200

seq1  TTGGTGAAATCAAGTAAAATTTCATTATAAAGTGACTCTGATACAAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAAATCAAGTAAAATTTCATTATAAAGTGACTCTGATACAAGTTT  250

seq1  TGAGCACAAAGATCAGAGTGGGTCTGAAGCATCCATCAAGGAGACCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAAAGATCAGAGTGGGTCTGAAGCATCCATCAAGGAGACCAGTA  300

seq1  GGAAACTCCTACAAAAAGAAGAGTTCATCCCGATCTGCATGAAGCTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTCCTACAAAAAGAAGAGTTCATCCCGATCTGCATGAAGCTATGT  350

seq1  GATGAGAGTGATGTATATTTATAGAAAGGAACATACAAAATAGGGCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAGTGATGTATATTTATAGAAAGGAACATACAAAATAGGGCCAGA  400

seq1  GTTGTAGCTCAGTTGGTAGAATCATTGTCTAGCAAGCAGGAGGCCCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGCTCAGTTGGTAGAATCATTGTCTAGCAAGCAGGAGGCCCTGTC  450

seq1  ACTAAATACACTGGGAACTGTGACTGTGACTTGTAACTGCAGCACTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATACACTGGGAACTGTGACTGTGACTTGTAACTGCAGCACTGGGA  500

seq1  AGGTGGAGGCACAAGGAGGAGGATCAGAAATGCAAAGTAATCCTAGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGGCACAAGGAGGAGGATCAGAAATGCAAAGTAATCCTAGGTGA  550

seq1  CATAGTGAGTTGAAGGCTAGTCTGGGCTATGTAAGACACTATCCCAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGAGTTGAAGGCTAGTCTGGGCTATGTAAGACACTATCCCAAAAG  600

seq1  AAAGAAGGAGGAAAGAAGACAGACAGGAAGAGAGGAAGGAAATCAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGAGGAAAGAAGACAGACAGGAAGAGAGGAAGGAAATCAGAAGA  650

seq1  TGAATGATAGACAAAAAGACAGAAAGAGAGGAATGAGGAAGAAACAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATAGACAAAAAGACAGAAAGAGAGGAATGAGGAAGAAACAGATA  700

seq1  GAGGGAGTGAGAGAGAAACAGAGTAAGAAATTAAATTAAGAAATTTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGTGAGAGAGAAACAGAGTAAGAAATTAAATTAAGAAATTTGAAC  750

seq1  TTGCCAGGCATGGTAGTACACACCTTTAATCCCAGGACTCAAGAGAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGGCATGGTAGTACACACCTTTAATCCCAGGACTCAAGAGAGAGA  800

seq1  GGCAGAGAGAACTCTGAGTTCAAGGACAGCCTCATTTACCTCGCAAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAGAACTCTGAGTTCAAGGACAGCCTCATTTACCTCGCAAGTTT  850

seq1  CAGGACAGCCAAGGCTATAAATTTTTTTTTTTTTTGTCTCAAACAAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCCAAGGCTATAAATTTTTTTTTTTTTTGTCTCAAACAAACAA  900

seq1  ACCCAAAAAACTAAGAAGCTTGGACTG-TTTTATAAAACATTTTCCTGTG  949
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCC-AAAAACTAAGAAGCTTGGACTGTTTTTATAAAACATTTTCCTGTG  949

seq1  AAAATTTACAGTAAAGTCAGCATAAATA--CAAATTTCCCATTCTTTTCT  997
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  AAAATTTACAGTAAAGTCAGCATAAATAACCAAATTTCCCATTCTTTTCT  999

seq1  TTTTAATTTTTTACATTTATTTTAATTTTAAAAATAATTTCACAATAATA  1047
      |||||| |||||||||||||||||| ||||||||||||||||||||||| 
seq2  TTTTAAATTTTTACATTTATTTTAAATTTAAAAATAATTTCACAATAAT-  1048

seq1  ACTGCATTTGCATTATTTATACACCTTCCTCTTCCAGCTCCTCCTATGTA  1097
      |||||| ||||||||||  |||||||||||| || |||||   ||||| |
seq2  ACTGCA-TTGCATTATTATTACACCTTCCTC-TCAAGCTC--TCTATG-A  1093

seq1  TCCTTTATGCTCTCTCAAGTTCATGACCTTTTCATTAATTTTGTTATATG  1147
      |  ||||||||||||||||| |||||| |     || || ||||   |||
seq2  TTATTTATGCTCTCTCAAGTCCATGACGT-----TTCATATTGT--AATG  1136

seq1  TATGCATATATAAATATAGCCTGCTG--TATACATGC-ACAG  1186
       ||||   |||  |||||||||||||  ||||||||| ||||
seq2  CATGCCATTAT--ATATAGCCTGCTGCATATACATGCGACAG  1176

seq1: chr7_4317475_4318474
seq2: B6Ng01-213C24.g_68_1081 (reverse)

seq1  AAAT-AGCAGTTTGA-CCGCATGACCA--TTTAGCAAACAGTAGCAGATT  46
      |||| |||||||||| |||||||| ||  || ||||||||||||||||||
seq2  AAATAAGCAGTTTGACCCGCATGAACAATTTAAGCAAACAGTAGCAGATT  50

seq1  --ACACACTAGGGGCTATAACCTCTCC-AGACATAAGC-TTTTGACC-AG  91
         |||||||||||||||||||||||| |||||||||| |||||||| ||
seq2  TACCACACTAGGGGCTATAACCTCTCCAAGACATAAGCTTTTTGACCAAG  100

seq1  AGTCTTTTTAATGTTTGTGTATTTGTCTACATGTGTCC-AAGTACACCTG  140
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTCTTTTTAATGTTTGTGTATTTGTCTACATGTGTCCAAAGTACACCTG  150

seq1  AATAAAGGATCCCTC-AAAGCTGG-AGGTACA-GGCATTGTGAGCCACTA  187
      ||||||||||||||| |||||||| ||||||| |||||||||||||||||
seq2  AATAAAGGATCCCTCAAAAGCTGGAAGGTACAGGGCATTGTGAGCCACTA  200

seq1  GAATTGGGTGCTATG-AATCAAACTTAGGTTCTCTTTAAAAGGAGCAGAA  236
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAATTGGGTGCTATGAAATCAAACTTAGGTTCTCTTTAAAAGGAGCAGAA  250

seq1  ACTTAACTGCTAAGATATCTATCCAGCCCCTCAACCGAGGTCTTAATTCA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACTGCTAAGATATCTATCCAGCCCCTCAACCGAGGTCTTAATTCA  300

seq1  TCTTATTGGTTAATTCATTTTTCTTGAGGTATATTTCCTCTGTCCCATAC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTGGTTAATTCATTTTTCTTGAGGTATATTTCCTCTGTCCCATAC  350

seq1  TCTCATACCCATCTTCTGTCTGCAAACCACACTCAAAGATGAGAGATGGC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATACCCATCTTCTGTCTGCAAACCACACTCAAAGATGAGAGATGGC  400

seq1  TAGAGGACTCGCTGCTATTTACAGGAATGGTACACGTGTGCAGAGGTGAA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGACTCGCTGCTATTTACAGGAATGGTACACGTGTGCAGAGGTGAA  450

seq1  CAAGCAAAGCAATGCTTGTTCTCATGACACTGATTTATCTGGATCACCAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAGCAATGCTTGTTCTCATGACACTGATTTATCTGGATCACCAG  500

seq1  CCTCTTCCCACTACTGGCTTCTAAGAACACAGTCTTTACCCTACTGCAGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCCACTACTGGCTTCTAAGAACACAGTCTTTACCCTACTGCAGA  550

seq1  AAATGTATGTATACATGTTTTGGATCTGTTCACATTGTTAACCAAGAAGG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATGTATACATGTTTTGGATCTGTTCACATTGTTAACCAAGAAGG  600

seq1  AAGTTCTCACTGTGAGTACTTTGGTACGGCGTACAGGAAGACCATCCTTC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTCACTGTGAGTACTTTGGTACGGCGTACAGGAAGACCATCCTTC  650

seq1  CACAATTCACCAATATCTTCAGCAACTCAGTAGCATATTCATGTTTGCAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTCACCAATATCTTCAGCAACTCAGTAGCATATTCATGTTTGCAT  700

seq1  GTCAGGGAGGCACCCAGGGGCTTATTGAAACTGAGTAGGTAAGGGGGTTC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGAGGCACCCAGGGGCTTATTGAAACTGAGTAGGTAAGGGGGTTC  750

seq1  CTGAAGAAAATAACCAAAGGTTATGGGTGTCTGTTCCTATACAATTCTCC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAAATAACCAAAGGTTATGGGTGTCTGTTCCTATACAATTCTCC  800

seq1  AGAACACTGACTTCATTCATTGGCTCCTCCAAACATCATTGATAGATTCC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTGACTTCATTCATTGGCTCCTCCAAACATCATTGATAGATTCC  850

seq1  TATCAGCCAAGCCATATTTTCCAATCCTCAGCTGTCCCTGAAGAGCAGGT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCCAAGCCATATTTTCCAATCCTCAGCTGTCCCTGAAGAGCAGGT  900

seq1  CATAGTGAATATCAGTGGGTGCTTTCCTGTGTCAAACTCAACCACAATTC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGAATATCAGTGGGTGCTTTCCTGTGTCAAACTCAACCACAATTC  950

seq1  TAGAAGATGACAGGGACCTCTTATCCAGAGTCCTGACCCAGACTTCTGGG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATGACAGGGACCTCTTATCCAGAGTCCTGACCCAGACTTCTGGG  1000

seq1  CACTCGCTGAATTC  1000
      ||||||||||||||
seq2  CACTCGCTGAATTC  1014