BAC Information

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BAC

Clone NameB6Ng01-214P13
Chromosome7 (Build37)11 (Build37)
Map Location 15,802,613 - 15,802,94547,179,975 - 47,181,105
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728
Downstream geneLOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214P13.bB6Ng01-214P13.g
ACCGA032075GA032076
length9971,140
definitionB6Ng01-214P13.b B6Ng01-214P13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,802,613 - 15,802,945)(47,179,975 - 47,181,105)
sequence
gaattcaacacacatactcagaaatcctgaaggcagttgagtactctgac
tctgatgaacttgaattttatcacatgaagattgatgatgttgggtagtc
agataggagaccatagagagtagatcctgtgagacattgatcatgcagta
tgacagtctgttcttcaaagacaagctacaaattgagcaaagtaggtctg
taactggagctagagttacaggcaatcctctggtcctctgggagaacagt
acgtgtgcttagaccctgagccatctctccagctcaatttgtggatttct
taaggaaattgtgcatatgaaggcagctcacaggaaataggttggtgtgg
ggaattgcaggctggtctccagtcgagctgaggtctgaaccttgatggtc
ctcatttaccttcatgacatgataggtgttcccttttgctcttggaactc
tggctcctgcctaagttaccccccccccccacagcccccacaagagaagc
atggtcagtagtcatgtagacaatggcccaagcttctgacattcaggcta
aactcctctccagttacctagcaacagtaaagaccataaaaaggggctgt
taggccccacctcactctctcactcctttgttctcttacctctcacttct
ctcactcctctctcctctttcctttctctttgtcttctcctctcctctct
cctctcccttactctctctttctctctagtctttctctctctctctctgt
ctctctctctctactctctctcccttctctctctctccctgcacttctat
aataaagctcttaaaccatagagagtctctgctccatcaagatctgctgt
gcactctggtcagtgttaggaacctcttccctcatccctctctcccatta
accccggtgctacaaggtgtggccctggggccccaggtcggagctgcccc
ttctcttctcctcaccccgcgccccccccccccctttcgtcgagtgg
gaattccatctgcaacagaaagtccaacgtgcaagtacacatgtaacttc
atgtccgcatccttcgcaatcaatgttatgaagaaaaaagtgaagcagag
gcagaaggatgatgtctgcggctctgcttgtgttgcaggggctcccccaa
aggatgggagaaggaaacggagaagtgaataagcataaggggaagcacct
gtggaggaaagagacccagcaggtgtagagtgaggccttggggagggagt
tcgcttgacatgtgtaaagggtattttctggatcattgaaggccaacaag
aaattgaaaacaagtatggattcatgttgctaagagctcacacaagctgt
agtcagacctcagctatgatatgattgcagctgtaaaccaacactgcaga
aggaagatgtcaggatgagatgaccatattgctctagctaggctgtcaca
gatgagaatggaggcttggagtcaagtctgggattactgatatcttctgg
ggagatgctgtcatgtctagacctgtaaagatatagaagggatgggcagg
gcactctcccagtgtggtgactattgggcaagtacagctaacagacatct
ctgatgcctggggcagggcatgggagagctcaggtgtccaataacaggta
aaggttctagaaaagcatcaagggaaatgagaaagccatttactgttgga
aaagagtgaggaagcaggctcaagggcaggagaacatggagcaagtagtt
acataaatgttaaaatgagcatagactctaaaatgctagtcacagaagta
cgtggaaaaagctctggaatgtaagagctgtgtgcgtacatacaaacagg
taagtttctaccacataaatattaagttagtaagagcagataatttgcat
gtaagtataaaatactttcttctaatggagccagaagatattcagtatca
ttatgaacatttatgctcacaattctagagggcagacaatgtgaagatgc
cactgaagttgcttaagacagaagctattggtgatacaccatggtgccac
attcatactatcaggtatagaacataatgatggtgtctaatcctggacat
ggctggaaggttaaacaggtcctaaggccattttgttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_15802613_15802945
seq2: B6Ng01-214P13.b_766_1037 (reverse)

seq1  GACGAAAGTGAGCTCTGGGGGGGGGGGGGCAAAATAGACCATGGTGGTGG  50
      |||||||| | |    ||||||| | |||   |  |||  |  |  | ||
seq2  GACGAAAGGGGG---GGGGGGGGCGCGGGGTGAGGAGA--AGAGAAGGGG  45

seq1  CATAT-TGA-CTGG----AAAGTGTGACAACTTGTCAGCTTTATGACTAA  94
      ||  |  || ||||      || |  ||| ||||| |||           
seq2  CAGCTCCGACCTGGGGCCCCAGGGCCACACCTTGT-AGC-----------  83

seq1  ACAGGTCCTCATTCAACA---AGAAGAGGTAACCATATTGGGTTTGTGGA  141
      || ||   | ||   | |    || |||| ||        ||||  |   
seq2  ACCGGGGTTAATGGGAGAGAGGGATGAGGGAA------GAGGTTCCT---  124

seq1  GCACACATTTTACCCCCGTTCTC--CAGACC--CATTG-GCAGTGGGACT  186
        ||||   | |||   || | |  |||| |   || | |||| |   ||
seq2  -AACAC---TGACCAGAGTGCACAGCAGATCTTGATGGAGCAGAGACTCT  170

seq1  CTGTAATATTGAGGGCTGGCTTATTATTATAGTGGGATCCAGAAAGTGAG  236
      || |  | || || |||      |||||||||           |||||  
seq2  CTATGGT-TTAAGAGCT------TTATTATAG-----------AAGTGCA  202

seq1  GGACATGTAGAATTGCCAGTCTCAATTTTGAAAAAGAAAAAAGGAAAAAA  286
      ||                           || | ||| | |||| | | |
seq2  GG---------------------------GAGAGAGAGAGAAGGGAGAGA  225

seq1  G-GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA  333
      | | ||||||||||||| ||||||||||||||| |||   ||||||||
seq2  GAGTAGAGAGAGAGAGACAGAGAGAGAGAGAGAAAGA-CTAGAGAGAA  272

seq1: chr11_47179975_47181105
seq2: B6Ng01-214P13.g_69_1208

seq1  GAATTCCATCTGCAACAGAAAGTCCAACGTGCAAGTACACATGTAACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTGCAACAGAAAGTCCAACGTGCAAGTACACATGTAACTTC  50

seq1  ATGTCCGCATCCTTCGCAATCAATGTTATGAAGAAAAAAGTGAAGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCGCATCCTTCGCAATCAATGTTATGAAGAAAAAAGTGAAGCAGAG  100

seq1  GCAGAAGGATGATGTCTGCGGCTCTGCTTGTGTTGCAGGGGCTCCCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGGATGATGTCTGCGGCTCTGCTTGTGTTGCAGGGGCTCCCCCAA  150

seq1  AGGATGGGAGAAGGAAACGGAGAAGTGAATAAGCATAAGGGGAAGCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGAGAAGGAAACGGAGAAGTGAATAAGCATAAGGGGAAGCACCT  200

seq1  GTGGAGGAAAGAGACCCAGCAGGTGTAGAGTGAGGCCTTGGGGAGGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGAAAGAGACCCAGCAGGTGTAGAGTGAGGCCTTGGGGAGGGAGT  250

seq1  TCGCTTGACATGTGTAAAGGGTATTTTCTGGATCATTGAAGGCCAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTGACATGTGTAAAGGGTATTTTCTGGATCATTGAAGGCCAACAAG  300

seq1  AAATTGAAAACAAGTATGGATTCATGTTGCTAAGAGCTCACACAAGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAAACAAGTATGGATTCATGTTGCTAAGAGCTCACACAAGCTGT  350

seq1  AGTCAGACCTCAGCTATGATATGATTGCAGCTGTAAACCAACACTGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGACCTCAGCTATGATATGATTGCAGCTGTAAACCAACACTGCAGA  400

seq1  AGGAAGATGTCAGGATGAGATGACCATATTGCTCTAGCTAGGCTGTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATGTCAGGATGAGATGACCATATTGCTCTAGCTAGGCTGTCACA  450

seq1  GATGAGAATGGAGGCTTGGAGTCAAGTCTGGGATTACTGATATCTTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAATGGAGGCTTGGAGTCAAGTCTGGGATTACTGATATCTTCTGG  500

seq1  GGAGATGCTGTCATGTCTAGACCTGTAAAGATATAGAAGGGATGGGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGCTGTCATGTCTAGACCTGTAAAGATATAGAAGGGATGGGCAGG  550

seq1  GCACTCTCCCAGTGTGGTGACTATTGGGCAAGTACAGCTAACAGACATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTCCCAGTGTGGTGACTATTGGGCAAGTACAGCTAACAGACATCT  600

seq1  CTGATGCCTGGGGCAGGGCATGGGAGAGCTCAGGTGTCCAATAACAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCCTGGGGCAGGGCATGGGAGAGCTCAGGTGTCCAATAACAGGTA  650

seq1  AAGGTTCTAGAAAAGCATCAAGGGAAATGAGAAAGCCATTTACTGTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTAGAAAAGCATCAAGGGAAATGAGAAAGCCATTTACTGTTGGA  700

seq1  AAAGAGTGAGGAAGCAGGCTCAAGGGCAGGAGAACATGGAGCAAGTAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTGAGGAAGCAGGCTCAAGGGCAGGAGAACATGGAGCAAGTAGTT  750

seq1  ACATAAATGTTAAAATGAGCATAGACTCTAAAATGCTAGTCACAGAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATGTTAAAATGAGCATAGACTCTAAAATGCTAGTCACAGAAGTA  800

seq1  CGTGGAAAAAGCTCTGGAATGTAAGAGCTGTGTGCGTACATACAAACAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAAAAGCTCTGGAATGTAAGAGCTGTGTGCGTACATACAAACAGG  850

seq1  TAAGTTTCTACCACATAAATATTAAG-TAGTAAGAGCAGATAATTTGCAT  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAAGTTTCTACCACATAAATATTAAGTTAGTAAGAGCAGATAATTTGCAT  900

seq1  GTAAGTATAAAATACTTTCTTCTAAT-GAGCCAGAAGATAATTCAGTATC  948
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  GTAAGTATAAAATACTTTCTTCTAATGGAGCCAGAAGAT-ATTCAGTATC  949

seq1  ATTATGAACATTAATGCTCACCATTCTAGAGGGCAGAC-ATGTG-AGATG  996
      |||||||||||| |||||||| |||||||||||||||| ||||| |||||
seq2  ATTATGAACATTTATGCTCACAATTCTAGAGGGCAGACAATGTGAAGATG  999

seq1  CCACTGAAGTTGCTTTAGACAGAAAGCTATTGGTGATACA-CAT-GTG-C  1043
      ||||||||||||||| |||||| ||||||||||||||||| ||| ||| |
seq2  CCACTGAAGTTGCTTAAGACAG-AAGCTATTGGTGATACACCATGGTGCC  1048

seq1  ACATTCATACTAATCA-GTATAG-ACAT-ATGAATGTGTCTATTCCTGAC  1090
      ||||||||||| |||| |||||| |||| ||||  ||||||| |||||  
seq2  ACATTCATACT-ATCAGGTATAGAACATAATGATGGTGTCTAATCCTGGA  1097

seq1  AATTGCTGGAAGGTT-AACA-GTCTTAAAGCCATTTTGTTATG  1131
       || ||||||||||| |||| ||| ||| ||||||||||||||
seq2  CATGGCTGGAAGGTTAAACAGGTCCTAAGGCCATTTTGTTATG  1140